Wall clock time and date at job start Wed Apr 1 2020 03:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35964 * 126.35831 * 2 1 4 4 N 1.30212 * 110.06537 * 179.81576 * 3 2 1 5 5 C 1.35732 * 109.67788 * 0.45613 * 4 3 2 6 6 N 1.33103 * 133.19667 * 179.69964 * 5 4 3 7 7 C 1.31844 * 121.82917 * 180.02562 * 6 5 4 8 8 O 1.35729 * 119.27742 * 180.02562 * 7 6 5 9 9 C 1.39129 * 121.44784 * 359.97438 * 7 6 5 10 10 C 1.39567 * 119.23114 * 0.02562 * 9 7 6 11 11 C 1.47913 * 121.00560 * 179.97438 * 10 9 7 12 12 O 1.21545 * 119.99779 * 138.98487 * 11 10 9 13 13 N 1.34776 * 120.00300 * 318.98443 * 11 10 9 14 14 C 1.46498 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.64351 * 305.70804 * 15 14 13 17 17 C 1.55158 * 110.72123 * 182.56236 * 15 14 13 18 18 C 1.54906 * 101.58427 * 206.13798 * 17 15 14 19 19 N 1.47424 * 104.83236 * 37.00644 * 18 17 15 20 20 C 1.36938 * 125.65030 * 155.90205 * 19 18 17 21 21 H 1.07999 * 120.00533 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99644 * 359.97438 * 20 19 18 23 23 N 1.31613 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99862 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46974 * 89.99781 * 24 22 20 26 26 H 1.48494 * 109.47289 * 209.99824 * 24 22 20 27 27 H 1.48499 * 109.47354 * 330.00173 * 24 22 20 28 28 C 1.47318 * 108.73623 * 335.71982 * 19 18 17 29 29 C 1.37602 * 126.36747 * 180.31162 * 2 1 3 30 30 H 1.08998 * 109.46815 * 263.00057 * 1 2 3 31 31 H 1.09002 * 109.46554 * 143.00192 * 1 2 3 32 32 H 1.08994 * 109.47249 * 23.00214 * 1 2 3 33 33 H 1.07998 * 124.97289 * 0.02562 * 3 2 1 34 34 H 0.96699 * 114.00046 * 269.97613 * 8 7 6 35 35 H 1.07993 * 120.38253 * 179.97438 * 9 7 6 36 36 H 0.97000 * 119.99563 * 0.02562 * 13 11 10 37 37 H 1.08995 * 109.47350 * 300.00599 * 14 13 11 38 38 H 1.09001 * 109.46511 * 60.00747 * 14 13 11 39 39 H 1.09003 * 111.00000 * 324.21200 * 17 15 14 40 40 H 1.09006 * 111.00372 * 88.02111 * 17 15 14 41 41 H 1.08998 * 110.36953 * 155.84918 * 18 17 15 42 42 H 1.09001 * 110.36832 * 278.06482 * 18 17 15 43 43 H 0.96999 * 120.00020 * 179.97438 * 23 22 20 44 44 H 1.09002 * 110.06327 * 241.86653 * 28 19 18 45 45 H 1.09005 * 109.85385 * 120.61236 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0950 0.0000 4 7 3.5209 0.7296 0.0039 5 6 3.6011 -0.6253 -0.0035 6 7 4.6235 -1.4775 -0.0085 7 6 4.4405 -2.7831 -0.0160 8 8 5.5208 -3.6048 -0.0203 9 6 3.1643 -3.3371 -0.0185 10 6 2.0541 -2.4913 -0.0135 11 6 0.6797 -3.0381 -0.0165 12 8 -0.1784 -2.5287 0.6774 13 7 0.3789 -4.1010 -0.7886 14 6 -0.9822 -4.6428 -0.7911 15 6 -1.0538 -5.8375 -1.7442 16 1 -0.6962 -5.5599 -2.7358 17 6 -2.5000 -6.3948 -1.8183 18 6 -2.2444 -7.8721 -2.2078 19 7 -1.0217 -8.2494 -1.4757 20 6 -0.6623 -9.5234 -1.1252 21 1 0.2582 -9.6963 -0.5874 22 6 -1.4813 -10.5928 -1.4611 23 7 -2.6033 -10.3821 -2.1160 24 14 -0.9907 -12.3308 -0.9836 25 1 -1.5431 -12.6503 0.3574 26 1 -1.5294 -13.2891 -1.9820 27 1 0.4901 -12.4348 -0.9465 28 6 -0.2477 -7.0296 -1.1870 29 6 2.2810 -1.1080 -0.0060 30 1 -0.3633 -0.1252 1.0200 31 1 -0.3632 -0.8208 -0.6185 32 1 -0.3633 0.9459 -0.4016 33 1 1.9254 2.1181 0.0004 34 1 5.8339 -3.8382 -0.9050 35 1 3.0342 -4.4092 -0.0251 36 1 1.0639 -4.5077 -1.3420 37 1 -1.2467 -4.9654 0.2159 38 1 -1.6792 -3.8723 -1.1207 39 1 -2.9951 -6.3261 -0.8497 40 1 -3.0775 -5.8816 -2.5873 41 1 -3.0813 -8.4969 -1.8959 42 1 -2.0869 -7.9593 -3.2828 43 1 -3.1753 -11.1293 -2.3510 44 1 0.7254 -7.0799 -1.6756 45 1 -0.1188 -6.9191 -0.1103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028590003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:49 Heat of formation + Delta-G solvation = 23.682476 kcal Electronic energy + Delta-G solvation = -29764.247867 eV Core-core repulsion = 25590.199171 eV Total energy + Delta-G solvation = -4174.048696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59439 -41.02356 -40.26746 -39.24686 -37.33646 -36.17598 -35.36502 -34.40661 -33.26891 -31.56342 -30.34747 -29.88026 -28.05903 -27.41397 -26.18368 -24.87604 -24.12941 -22.92493 -22.06618 -21.42564 -20.95024 -19.94886 -19.11789 -18.87402 -18.45907 -18.01292 -17.43223 -17.22437 -16.75472 -16.63048 -16.25530 -16.09982 -15.74401 -15.53760 -15.30339 -14.95220 -14.49241 -14.40047 -14.36100 -14.25527 -13.53568 -13.41117 -13.30543 -13.12733 -12.88882 -12.85246 -12.78601 -12.65822 -12.02366 -12.00939 -11.91271 -11.85354 -11.81058 -11.59666 -11.49545 -11.28050 -10.73142 -10.36953 -10.22421 -9.91601 -9.58488 -8.86391 -7.76892 -5.20323 -0.73860 -0.07961 1.19628 1.44956 1.47422 1.48398 1.56908 1.69794 1.87522 2.22645 2.50076 2.54850 3.08093 3.26263 3.33099 3.48206 3.64423 3.68085 3.82040 3.93363 3.97893 4.06542 4.08954 4.13238 4.40699 4.45060 4.46964 4.63019 4.65797 4.70580 4.76688 4.82612 4.93131 5.00048 5.05068 5.14881 5.17706 5.25717 5.40948 5.49581 5.68250 5.84729 5.93039 6.29626 6.33060 6.34079 6.66831 6.85108 6.92210 7.12742 7.80903 8.43393 9.24876 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.002412 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.064049 B =11605.465138 C =13023.257718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.478 5.478 3 C 0.311 3.689 4 N -0.530 5.530 5 C 0.246 3.754 6 N -0.489 5.489 7 C 0.329 3.671 8 O -0.480 6.480 9 C -0.131 4.131 10 C -0.058 4.058 11 C 0.563 3.437 12 O -0.552 6.552 13 N -0.700 5.700 14 C 0.144 3.856 15 C -0.095 4.095 16 H 0.097 0.903 17 C -0.121 4.121 18 C 0.150 3.850 19 N -0.629 5.629 20 C -0.236 4.236 21 H 0.080 0.920 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.976 3.024 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.270 1.270 28 C 0.134 3.866 29 C 0.011 3.989 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.280 0.720 34 H 0.425 0.575 35 H 0.181 0.819 36 H 0.415 0.585 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.069 0.931 42 H -0.011 1.011 43 H 0.246 0.754 44 H 0.031 0.969 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 23.429 0.036 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.166 5.166 3 C 0.024 3.976 4 N -0.251 5.251 5 C 0.004 3.996 6 N -0.211 5.211 7 C 0.138 3.862 8 O -0.290 6.290 9 C -0.154 4.154 10 C -0.072 4.072 11 C 0.349 3.651 12 O -0.431 6.431 13 N -0.351 5.351 14 C 0.021 3.979 15 C -0.114 4.114 16 H 0.115 0.885 17 C -0.160 4.160 18 C 0.025 3.975 19 N -0.355 5.355 20 C -0.365 4.365 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.805 3.195 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.195 1.195 28 C 0.010 3.990 29 C -0.104 4.104 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.295 0.705 34 H 0.287 0.713 35 H 0.198 0.802 36 H 0.252 0.748 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.007 0.993 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.835 24.444 1.099 25.406 hybrid contribution -0.737 -2.484 -0.501 2.639 sum 6.098 21.960 0.598 22.799 Atomic orbital electron populations 1.22388 0.72766 1.05918 1.04624 1.45455 1.09078 1.04404 1.57639 1.26751 0.82913 0.95389 0.92573 1.70365 1.20662 1.08594 1.25509 1.19199 0.85847 0.91289 1.03293 1.65834 1.36226 1.04204 1.14834 1.18671 0.86633 0.84607 0.96251 1.84814 1.45439 1.62524 1.36260 1.22330 0.89928 1.02392 1.00760 1.19139 0.94315 0.89889 1.03842 1.18011 0.86699 0.80418 0.80021 1.90789 1.49340 1.60608 1.42384 1.45907 1.13729 1.30622 1.44810 1.21332 0.82457 0.94682 0.99416 1.22301 0.96830 0.92892 0.99389 0.88470 1.22832 0.95328 0.96001 1.01830 1.21728 0.90698 0.92659 0.92368 1.44892 1.22708 1.02057 1.65860 1.19444 1.04343 0.83333 1.29396 0.90202 1.25591 0.97483 1.01723 1.01264 1.70044 1.14135 1.29856 1.45881 0.85106 0.77854 0.79612 0.76948 1.21451 1.22135 1.19481 1.21608 0.94278 0.85961 0.97190 1.19550 0.93527 0.89657 1.07701 0.90325 0.90906 0.85065 0.70477 0.71330 0.80183 0.74824 0.92131 0.89578 0.91770 0.89145 0.91299 0.99286 0.94416 0.95085 0.95808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.41 127.77 1.20 2.15 16 2 N -0.48 -7.88 3.19 -542.69 -1.73 -9.61 16 3 C 0.31 4.22 12.49 180.05 2.25 6.47 16 4 N -0.53 -12.57 11.27 -196.94 -2.22 -14.79 16 5 C 0.25 6.62 8.37 134.28 1.12 7.75 16 6 N -0.49 -13.64 10.41 -307.36 -3.20 -16.84 16 7 C 0.33 7.29 7.71 84.91 0.65 7.94 16 8 O -0.48 -8.58 13.55 -90.52 -1.23 -9.81 16 9 C -0.13 -2.48 9.41 22.80 0.21 -2.26 16 10 C -0.06 -1.24 5.77 -19.92 -0.11 -1.36 16 11 C 0.56 12.35 6.67 86.81 0.58 12.93 16 12 O -0.55 -14.51 13.57 -3.86 -0.05 -14.57 16 13 N -0.70 -13.36 5.38 -465.91 -2.50 -15.86 16 14 C 0.14 3.18 5.00 86.38 0.43 3.62 16 15 C -0.09 -2.55 2.98 -9.60 -0.03 -2.58 16 16 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.12 -3.89 6.54 31.99 0.21 -3.68 16 18 C 0.15 6.97 5.89 86.85 0.51 7.48 16 19 N -0.63 -30.63 3.40 -691.23 -2.35 -32.98 16 20 C -0.24 -12.83 10.28 84.03 0.86 -11.97 16 21 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 22 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 23 N -0.95 -55.50 10.09 21.65 0.22 -55.28 16 24 Si 0.98 44.89 29.55 68.60 2.03 46.91 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.13 4.82 6.66 86.67 0.58 5.39 16 29 C 0.01 0.26 6.77 39.28 0.27 0.53 16 30 H 0.08 1.08 7.75 -2.39 -0.02 1.06 16 31 H 0.07 1.09 6.21 -2.39 -0.01 1.07 16 32 H 0.13 0.29 8.13 -2.39 -0.02 0.27 16 33 H 0.28 0.14 8.06 -2.91 -0.02 0.11 16 34 H 0.42 2.98 9.06 -74.06 -0.67 2.31 16 35 H 0.18 2.48 7.99 -2.91 -0.02 2.46 16 36 H 0.41 6.39 8.00 -92.71 -0.74 5.65 16 37 H 0.06 1.57 8.00 -2.39 -0.02 1.55 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 2.08 8.05 -2.39 -0.02 2.06 16 40 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.07 3.74 5.87 -2.39 -0.01 3.72 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.02 0.87 7.73 -2.38 -0.02 0.85 16 Total: -1.00 -82.61 372.86 -2.19 -84.80 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -0.35 Total: 8.95 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 9.21 Total: 29.08 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -11.79 Total: -145.37 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.28 Total: -24.37 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -82.61 -2.19 -84.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028590003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.482 kcal (2) G-P(sol) polarization free energy of solvation -82.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds