Wall clock time and date at job start Wed Apr 1 2020 03:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34461 * 125.76691 * 2 1 4 4 C 1.38074 * 107.38874 * 180.02562 * 3 2 1 5 5 C 1.47358 * 126.40790 * 180.02562 * 4 3 2 6 6 O 1.34249 * 127.19319 * 312.38444 * 5 4 3 7 7 N 1.20733 * 111.95267 * 180.02562 * 6 5 4 8 8 C 1.29881 * 112.81247 * 359.97438 * 7 6 5 9 9 C 1.39926 * 127.19441 * 132.07369 * 5 4 3 10 10 C 1.46913 * 128.39926 * 359.97438 * 9 5 4 11 11 O 1.21671 * 119.99885 * 354.42698 * 10 9 5 12 12 N 1.34776 * 120.00287 * 174.43146 * 10 9 5 13 13 C 1.46500 * 119.99902 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46947 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.64141 * 305.70112 * 14 13 12 16 16 C 1.55154 * 110.72148 * 182.55926 * 14 13 12 17 17 C 1.54910 * 101.58307 * 206.13456 * 16 14 13 18 18 N 1.47428 * 104.83318 * 37.00702 * 17 16 14 19 19 C 1.36935 * 125.64800 * 155.90435 * 18 17 16 20 20 H 1.08002 * 119.99694 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99888 * 359.97438 * 19 18 17 22 22 N 1.31614 * 120.00200 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99624 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47150 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46771 * 120.00150 * 23 21 19 26 26 H 1.48501 * 109.46883 * 239.99688 * 23 21 19 27 27 C 1.47320 * 108.73320 * 335.71968 * 18 17 16 28 28 C 1.41303 * 107.17835 * 359.97438 * 4 3 2 29 29 N 1.30477 * 108.05705 * 359.72360 * 28 4 3 30 30 H 1.08993 * 109.46749 * 90.00001 * 1 2 3 31 31 H 1.08998 * 109.46846 * 329.99567 * 1 2 3 32 32 H 1.09005 * 109.46695 * 209.99754 * 1 2 3 33 33 H 1.07999 * 126.30224 * 0.03765 * 3 2 1 34 34 H 1.08001 * 126.79244 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99929 * 359.97438 * 12 10 9 36 36 H 1.09004 * 109.47412 * 299.99412 * 13 12 10 37 37 H 1.08995 * 109.47424 * 59.99844 * 13 12 10 38 38 H 1.09003 * 111.00457 * 324.20722 * 16 14 13 39 39 H 1.09002 * 111.00662 * 88.01788 * 16 14 13 40 40 H 1.08999 * 110.36748 * 155.84518 * 17 16 14 41 41 H 1.08997 * 110.36753 * 278.05856 * 17 16 14 42 42 H 0.97006 * 120.00051 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.05898 * 241.87074 * 27 18 17 44 44 H 1.08994 * 109.85029 * 120.60999 * 27 18 17 45 45 H 1.08001 * 125.96864 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0910 0.0000 4 6 3.5613 0.6557 -0.0006 5 6 4.7652 1.5054 -0.0003 6 8 5.0124 2.5629 -0.7895 7 7 6.0877 3.0593 -0.5553 8 6 6.7281 2.4484 0.3952 9 6 5.8872 1.3824 0.8268 10 6 6.1384 0.3922 1.8826 11 8 5.2677 -0.3983 2.1948 12 7 7.3331 0.3595 2.5054 13 6 7.5833 -0.6276 3.5587 14 6 9.0045 -0.4500 4.0968 15 1 9.7306 -0.4896 3.2847 16 6 9.3231 -1.5236 5.1707 17 6 10.4028 -0.8053 6.0179 18 7 9.9776 0.6059 6.0535 19 6 10.3167 1.5176 7.0173 20 1 9.9527 2.5323 6.9528 21 6 11.1284 1.1374 8.0773 22 7 11.5724 -0.0991 8.1557 23 14 11.5915 2.3813 9.3918 24 1 10.9699 3.6919 9.0741 25 1 11.1050 1.9095 10.7131 26 1 13.0683 2.5314 9.4329 27 6 9.1310 0.8747 4.8782 28 6 3.5317 -0.7570 -0.0003 29 7 2.2830 -1.1354 0.0063 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 0.8899 0.5139 32 1 -0.3633 -0.8901 0.5138 33 1 1.9185 2.1185 0.0006 34 1 7.7036 2.7008 0.7841 35 1 8.0273 0.9895 2.2563 36 1 6.8681 -0.4840 4.3686 37 1 7.4721 -1.6317 3.1495 38 1 8.4417 -1.7492 5.7710 39 1 9.7230 -2.4281 4.7124 40 1 10.4309 -1.2185 7.0261 41 1 11.3800 -0.8969 5.5438 42 1 12.1393 -0.3648 8.8967 43 1 9.5955 1.6336 4.2485 44 1 8.1455 1.2103 5.2009 45 1 4.3923 -1.4095 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028710121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:32 Heat of formation + Delta-G solvation = 137.034323 kcal Electronic energy + Delta-G solvation = -29217.797132 eV Core-core repulsion = 25048.663741 eV Total energy + Delta-G solvation = -4169.133391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.10833 -41.45559 -39.55995 -37.62034 -34.72919 -34.27945 -33.91823 -32.53680 -32.44271 -30.04827 -29.66232 -28.33622 -27.18680 -25.88478 -24.73863 -23.50821 -22.90481 -21.43993 -21.13579 -20.62579 -19.99451 -19.61371 -18.46334 -17.83663 -17.45203 -16.80507 -16.29971 -15.88402 -15.84068 -15.41739 -14.92770 -14.82911 -14.66296 -14.38845 -13.75217 -13.72284 -13.53576 -13.39041 -13.18137 -12.86546 -12.79028 -12.51816 -11.94525 -11.77487 -11.70049 -11.51014 -11.18360 -10.95813 -10.82828 -10.72461 -10.45997 -10.17933 -10.07928 -10.02229 -9.98903 -9.83923 -9.76709 -9.52500 -8.99842 -8.66383 -8.57438 -6.84489 -5.66509 -3.08066 0.60525 1.50587 1.65220 1.99183 2.33415 2.76043 3.20260 3.25660 3.38969 3.44483 3.46969 3.99976 4.05514 4.34261 4.43727 4.47603 4.51199 4.68255 4.80712 4.93414 4.96433 5.07715 5.17845 5.24774 5.35151 5.39716 5.42318 5.51590 5.59827 5.69188 5.87484 6.05870 6.10432 6.17742 6.33588 6.41189 6.45774 6.53709 6.57910 6.70878 6.89476 7.28756 7.49421 7.50798 7.61914 7.84873 7.92399 8.19589 8.35484 9.21197 9.81968 10.46709 11.37517 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.002097 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.911746 B =13351.156962 C =13883.354411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.365 5.365 3 C 0.101 3.899 4 C -0.194 4.194 5 C 0.131 3.869 6 O 0.103 5.897 7 N -0.366 5.366 8 C 0.030 3.970 9 C -0.250 4.250 10 C 0.593 3.407 11 O -0.530 6.530 12 N -0.716 5.716 13 C 0.135 3.865 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.140 3.860 28 C 0.125 3.875 29 N -0.297 5.297 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.185 0.815 34 H 0.200 0.800 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.012 0.988 42 H 0.251 0.749 43 H 0.018 0.982 44 H 0.025 0.975 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.025 0.920 -19.931 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.143 5.143 3 C -0.049 4.049 4 C -0.208 4.208 5 C 0.063 3.937 6 O 0.042 5.958 7 N -0.071 5.071 8 C -0.150 4.150 9 C -0.258 4.258 10 C 0.379 3.621 11 O -0.408 6.408 12 N -0.367 5.367 13 C 0.012 3.988 14 C -0.134 4.134 15 H 0.095 0.905 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.014 3.986 28 C -0.063 4.063 29 N -0.117 5.117 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.202 0.798 34 H 0.216 0.784 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.240 0.411 -20.259 28.640 hybrid contribution 1.429 1.271 1.153 2.233 sum -18.811 1.682 -19.106 26.865 Atomic orbital electron populations 1.21981 0.73390 1.05079 1.03811 1.48319 1.07188 1.03771 1.55022 1.22953 0.89941 0.93836 0.98213 1.17656 0.88261 0.92019 1.22817 1.22017 0.93933 0.88174 0.89528 1.84885 1.28470 1.34629 1.47773 1.73545 0.94439 1.20586 1.18506 1.25055 1.01965 0.93284 0.94684 1.21427 0.97018 1.03076 1.04284 1.16681 0.82505 0.82566 0.80368 1.90838 1.44104 1.40709 1.65119 1.45873 1.14733 1.37256 1.38827 1.21489 0.96895 0.91241 0.89203 1.22452 0.94284 0.98459 0.98226 0.90537 1.23002 1.01176 0.96467 0.96752 1.21928 0.91446 0.83432 1.00514 1.44583 1.57048 1.08139 1.23319 1.19121 1.24646 0.91452 0.99786 0.90498 1.24793 1.00113 0.96851 0.99025 1.69805 1.39083 1.15879 1.32309 0.86002 0.77875 0.80066 0.81585 1.20553 1.21723 1.21769 1.21394 0.94555 0.93483 0.89148 1.23882 0.94995 0.92698 0.94703 1.77283 1.01564 1.07370 1.25494 0.90188 0.89102 0.88782 0.79774 0.78351 0.76533 0.91048 0.91368 0.91814 0.92081 0.87534 0.97010 0.93773 0.96378 0.95699 0.79360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 11.45 59.85 0.69 1.06 16 2 N -0.36 -3.10 3.99 -67.54 -0.27 -3.37 16 3 C 0.10 0.82 11.51 -16.46 -0.19 0.63 16 4 C -0.19 -2.07 5.56 -105.08 -0.58 -2.65 16 5 C 0.13 1.44 7.39 -35.24 -0.26 1.18 16 6 O 0.10 1.12 11.17 16.67 0.19 1.31 16 7 N -0.37 -4.16 11.97 30.85 0.37 -3.80 16 8 C 0.03 0.30 11.68 -16.75 -0.20 0.11 16 9 C -0.25 -2.90 6.36 -104.12 -0.66 -3.56 16 10 C 0.59 7.91 7.80 -12.75 -0.10 7.81 16 11 O -0.53 -8.51 14.57 5.21 0.08 -8.44 16 12 N -0.72 -8.82 5.43 -61.54 -0.33 -9.15 16 13 C 0.13 1.89 5.00 -4.04 -0.02 1.87 16 14 C -0.11 -1.83 2.98 -88.79 -0.26 -2.10 16 15 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.13 -2.43 6.54 -24.58 -0.16 -2.60 16 17 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 18 N -0.60 -15.24 3.40 -169.84 -0.58 -15.82 16 19 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 23 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.14 2.77 6.67 -2.90 -0.02 2.75 16 28 C 0.12 1.44 10.39 -16.96 -0.18 1.26 16 29 N -0.30 -3.45 12.50 30.87 0.39 -3.07 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.20 1.43 7.77 -52.49 -0.41 1.02 16 35 H 0.40 4.12 7.65 -40.82 -0.31 3.81 16 36 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.03 0.51 7.73 -51.93 -0.40 0.10 16 45 H 0.19 2.05 7.83 -52.49 -0.41 1.64 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -35.18 381.18 -7.12 -42.29 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.02 Total: 0.86 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.21 Total: 2.62 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.13 Total: -61.40 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.26 Total: -7.13 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.18 -7.12 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028710121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.328 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds