Wall clock time and date at job start Wed Apr 1 2020 03:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34461 * 125.76691 * 2 1 4 4 C 1.38074 * 107.38874 * 180.02562 * 3 2 1 5 5 C 1.47358 * 126.40790 * 180.02562 * 4 3 2 6 6 O 1.34249 * 127.19319 * 312.38444 * 5 4 3 7 7 N 1.20733 * 111.95267 * 180.02562 * 6 5 4 8 8 C 1.29881 * 112.81247 * 359.97438 * 7 6 5 9 9 C 1.39926 * 127.19441 * 132.07369 * 5 4 3 10 10 C 1.46913 * 128.39926 * 359.97438 * 9 5 4 11 11 O 1.21671 * 119.99885 * 354.42698 * 10 9 5 12 12 N 1.34776 * 120.00287 * 174.43146 * 10 9 5 13 13 C 1.46500 * 119.99902 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46947 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.64141 * 305.70112 * 14 13 12 16 16 C 1.55154 * 110.72148 * 182.55926 * 14 13 12 17 17 C 1.54910 * 101.58307 * 206.13456 * 16 14 13 18 18 N 1.47428 * 104.83318 * 37.00702 * 17 16 14 19 19 C 1.36935 * 125.64800 * 155.90435 * 18 17 16 20 20 H 1.08002 * 119.99694 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99888 * 359.97438 * 19 18 17 22 22 N 1.31614 * 120.00200 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99624 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47150 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46771 * 120.00150 * 23 21 19 26 26 H 1.48501 * 109.46883 * 239.99688 * 23 21 19 27 27 C 1.47320 * 108.73320 * 335.71968 * 18 17 16 28 28 C 1.41303 * 107.17835 * 359.97438 * 4 3 2 29 29 N 1.30477 * 108.05705 * 359.72360 * 28 4 3 30 30 H 1.08993 * 109.46749 * 90.00001 * 1 2 3 31 31 H 1.08998 * 109.46846 * 329.99567 * 1 2 3 32 32 H 1.09005 * 109.46695 * 209.99754 * 1 2 3 33 33 H 1.07999 * 126.30224 * 0.03765 * 3 2 1 34 34 H 1.08001 * 126.79244 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99929 * 359.97438 * 12 10 9 36 36 H 1.09004 * 109.47412 * 299.99412 * 13 12 10 37 37 H 1.08995 * 109.47424 * 59.99844 * 13 12 10 38 38 H 1.09003 * 111.00457 * 324.20722 * 16 14 13 39 39 H 1.09002 * 111.00662 * 88.01788 * 16 14 13 40 40 H 1.08999 * 110.36748 * 155.84518 * 17 16 14 41 41 H 1.08997 * 110.36753 * 278.05856 * 17 16 14 42 42 H 0.97006 * 120.00051 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.05898 * 241.87074 * 27 18 17 44 44 H 1.08994 * 109.85029 * 120.60999 * 27 18 17 45 45 H 1.08001 * 125.96864 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0910 0.0000 4 6 3.5613 0.6557 -0.0006 5 6 4.7652 1.5054 -0.0003 6 8 5.0124 2.5629 -0.7895 7 7 6.0877 3.0593 -0.5553 8 6 6.7281 2.4484 0.3952 9 6 5.8872 1.3824 0.8268 10 6 6.1384 0.3922 1.8826 11 8 5.2677 -0.3983 2.1948 12 7 7.3331 0.3595 2.5054 13 6 7.5833 -0.6276 3.5587 14 6 9.0045 -0.4500 4.0968 15 1 9.7306 -0.4896 3.2847 16 6 9.3231 -1.5236 5.1707 17 6 10.4028 -0.8053 6.0179 18 7 9.9776 0.6059 6.0535 19 6 10.3167 1.5176 7.0173 20 1 9.9527 2.5323 6.9528 21 6 11.1284 1.1374 8.0773 22 7 11.5724 -0.0991 8.1557 23 14 11.5915 2.3813 9.3918 24 1 10.9699 3.6919 9.0741 25 1 11.1050 1.9095 10.7131 26 1 13.0683 2.5314 9.4329 27 6 9.1310 0.8747 4.8782 28 6 3.5317 -0.7570 -0.0003 29 7 2.2830 -1.1354 0.0063 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 0.8899 0.5139 32 1 -0.3633 -0.8901 0.5138 33 1 1.9185 2.1185 0.0006 34 1 7.7036 2.7008 0.7841 35 1 8.0273 0.9895 2.2563 36 1 6.8681 -0.4840 4.3686 37 1 7.4721 -1.6317 3.1495 38 1 8.4417 -1.7492 5.7710 39 1 9.7230 -2.4281 4.7124 40 1 10.4309 -1.2185 7.0261 41 1 11.3800 -0.8969 5.5438 42 1 12.1393 -0.3648 8.8967 43 1 9.5955 1.6336 4.2485 44 1 8.1455 1.2103 5.2009 45 1 4.3923 -1.4095 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028710121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:30 Heat of formation + Delta-G solvation = 112.989129 kcal Electronic energy + Delta-G solvation = -29218.839809 eV Core-core repulsion = 25048.663741 eV Total energy + Delta-G solvation = -4170.176069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.91917 -42.14555 -40.66001 -39.17122 -36.04899 -35.10177 -34.68505 -34.16212 -33.26614 -31.63481 -30.59044 -29.83790 -27.82075 -27.36126 -26.10589 -24.69722 -23.80792 -22.38496 -21.98838 -21.80776 -21.40423 -20.89281 -19.32942 -18.83389 -18.64942 -18.19452 -17.32724 -16.84956 -16.73458 -16.50976 -16.40815 -15.84887 -15.80619 -15.48416 -15.32666 -14.63318 -14.33779 -14.26018 -14.23118 -14.04654 -13.63228 -13.52495 -13.35216 -13.27893 -13.11571 -12.79282 -12.72728 -12.68406 -11.97141 -11.92337 -11.86202 -11.80777 -11.56220 -11.54005 -11.36116 -11.07065 -10.86844 -10.73555 -10.51395 -10.06591 -9.32146 -8.85906 -7.76334 -5.19914 -0.20902 0.80609 0.85458 1.38587 1.47010 1.47593 1.57850 1.58238 1.91137 2.22677 2.32017 2.50241 3.24785 3.33415 3.37265 3.61186 3.66692 3.82832 3.84936 3.88687 4.01943 4.07542 4.14546 4.24069 4.45528 4.47401 4.49764 4.67736 4.68230 4.69268 4.74236 4.75281 4.83432 4.87936 4.95603 5.08950 5.16839 5.36607 5.40415 5.45224 5.50796 5.69158 5.85302 5.92865 6.33908 6.52704 6.56076 7.11458 7.12991 7.20660 7.80988 8.44242 9.25680 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.002097 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.911746 B =13351.156962 C =13883.354411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.362 5.362 3 C 0.119 3.881 4 C -0.225 4.225 5 C 0.142 3.858 6 O 0.102 5.898 7 N -0.383 5.383 8 C 0.042 3.958 9 C -0.269 4.269 10 C 0.596 3.404 11 O -0.561 6.561 12 N -0.708 5.708 13 C 0.148 3.852 14 C -0.094 4.094 15 H 0.098 0.902 16 C -0.122 4.122 17 C 0.151 3.849 18 N -0.629 5.629 19 C -0.235 4.235 20 H 0.080 0.920 21 C -0.070 4.070 22 N -0.949 5.949 23 Si 0.978 3.022 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.136 3.864 28 C 0.112 3.888 29 N -0.331 5.331 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.227 0.773 35 H 0.412 0.588 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.069 0.931 41 H -0.010 1.010 42 H 0.246 0.754 43 H 0.032 0.968 44 H 0.021 0.979 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 2.335 -21.304 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.140 5.140 3 C -0.034 4.034 4 C -0.239 4.239 5 C 0.075 3.925 6 O 0.043 5.957 7 N -0.090 5.090 8 C -0.137 4.137 9 C -0.277 4.277 10 C 0.383 3.617 11 O -0.441 6.441 12 N -0.359 5.359 13 C 0.024 3.976 14 C -0.113 4.113 15 H 0.116 0.884 16 C -0.161 4.161 17 C 0.026 3.974 18 N -0.355 5.355 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.263 4.263 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.011 3.989 28 C -0.075 4.075 29 N -0.152 5.152 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.242 0.758 34 H 0.243 0.757 35 H 0.249 0.751 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.008 0.992 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.039 0.961 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.663 1.837 -21.676 30.701 hybrid contribution 1.751 0.840 1.539 2.478 sum -19.912 2.677 -20.137 28.446 Atomic orbital electron populations 1.22397 0.70800 1.06487 1.05496 1.48722 1.08607 1.03081 1.53581 1.23560 0.88944 0.95265 0.95603 1.17839 0.89316 0.91676 1.25029 1.22139 0.93848 0.87744 0.88776 1.84883 1.28473 1.34632 1.47668 1.73538 0.94821 1.21325 1.19300 1.25442 1.02523 0.92082 0.93692 1.21285 0.98095 1.03639 1.04661 1.16833 0.82136 0.82359 0.80347 1.90828 1.45091 1.42034 1.66145 1.45712 1.14948 1.37120 1.38162 1.21215 0.94892 0.92291 0.89190 1.22289 0.96077 0.95243 0.97662 0.88374 1.22838 0.99165 0.97563 0.96552 1.21726 0.92517 0.83717 0.99422 1.44908 1.57640 1.08410 1.24557 1.19483 1.24262 0.92153 1.00528 0.90231 1.25624 1.00719 0.98660 1.01256 1.70062 1.39703 1.17455 1.32699 0.85005 0.77184 0.78456 0.78675 1.19140 1.21964 1.21952 1.21588 0.93348 0.95929 0.88041 1.23873 0.95054 0.93368 0.95179 1.77199 1.01977 1.09325 1.26698 0.88342 0.86066 0.89056 0.75834 0.75681 0.75147 0.92764 0.90225 0.91970 0.89209 0.91254 0.99157 0.94411 0.95040 0.96054 0.80069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.45 127.77 1.46 1.91 16 2 N -0.36 -5.53 3.99 -367.59 -1.47 -7.00 16 3 C 0.12 1.66 11.51 84.25 0.97 2.63 16 4 C -0.23 -4.60 5.56 -20.16 -0.11 -4.71 16 5 C 0.14 2.98 7.39 25.08 0.19 3.17 16 6 O 0.10 2.06 11.17 69.88 0.78 2.84 16 7 N -0.38 -8.04 11.97 -56.82 -0.68 -8.72 16 8 C 0.04 0.77 11.68 86.04 1.01 1.77 16 9 C -0.27 -5.86 6.36 -19.54 -0.12 -5.98 16 10 C 0.60 15.18 7.80 86.51 0.67 15.85 16 11 O -0.56 -17.79 14.57 -4.25 -0.06 -17.86 16 12 N -0.71 -15.98 5.43 -466.85 -2.53 -18.51 16 13 C 0.15 3.86 5.00 86.38 0.43 4.29 16 14 C -0.09 -2.78 2.98 -9.61 -0.03 -2.81 16 15 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 16 C -0.12 -4.26 6.54 31.99 0.21 -4.05 16 17 C 0.15 7.30 5.89 86.85 0.51 7.81 16 18 N -0.63 -31.81 3.40 -691.24 -2.35 -34.16 16 19 C -0.24 -13.12 10.28 84.03 0.86 -12.26 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 21 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 22 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16 23 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 C 0.14 5.19 6.67 86.67 0.58 5.77 16 28 C 0.11 2.61 10.39 85.65 0.89 3.50 16 29 N -0.33 -7.63 12.50 -56.25 -0.70 -8.34 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.23 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.23 2.56 7.77 -2.91 -0.02 2.53 16 35 H 0.41 7.34 7.65 -92.71 -0.71 6.64 16 36 H 0.05 1.64 8.00 -2.39 -0.02 1.62 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 39 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.07 3.88 5.87 -2.39 -0.01 3.87 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.02 0.84 7.73 -2.39 -0.02 0.82 16 45 H 0.18 4.19 7.83 -2.91 -0.02 4.16 16 Total: -1.00 -78.63 381.18 3.54 -75.09 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.32 Total: 11.92 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 7.98 Total: 13.36 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -7.51 Total: -133.14 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.72 Total: -15.01 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -78.63 3.54 -75.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028710121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.081 kcal (2) G-P(sol) polarization free energy of solvation -78.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds