Wall clock time and date at job start Wed Apr 1 2020 03:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00297 * 2 1 4 4 O 1.21493 * 120.00253 * 184.20773 * 3 2 1 5 5 C 1.48347 * 119.99689 * 4.20237 * 3 2 1 6 6 C 1.41888 * 126.84506 * 184.69435 * 5 3 2 7 7 C 1.36728 * 103.82215 * 179.97438 * 6 5 3 8 8 C 1.47852 * 126.81931 * 180.02562 * 7 6 5 9 9 C 1.41043 * 126.06891 * 179.71474 * 8 7 6 10 10 C 1.35004 * 107.84856 * 179.86233 * 9 8 7 11 11 N 1.35098 * 108.02940 * 0.39908 * 10 9 8 12 12 C 1.46498 * 125.90970 * 179.72619 * 11 10 9 13 13 N 1.31819 * 126.06730 * 0.02598 * 8 7 6 14 14 O 1.34456 * 106.36246 * 0.02562 * 7 6 5 15 15 N 1.20881 * 111.73615 * 359.74046 * 14 7 6 16 16 C 1.46504 * 119.99758 * 179.72907 * 2 1 3 17 17 H 1.08997 * 110.88370 * 176.11914 * 16 2 1 18 18 C 1.55159 * 110.99940 * 299.99162 * 16 2 1 19 19 C 1.54328 * 102.93527 * 153.57991 * 18 16 2 20 20 N 1.47019 * 107.27530 * 337.80625 * 19 18 16 21 21 C 1.36936 * 125.65195 * 178.91619 * 20 19 18 22 22 H 1.07999 * 120.00070 * 180.02562 * 21 20 19 23 23 C 1.38811 * 119.99777 * 0.03315 * 21 20 19 24 24 N 1.31624 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47137 * 59.99712 * 25 23 21 27 27 H 1.48504 * 109.47184 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46956 * 299.99529 * 25 23 21 29 29 C 1.47429 * 108.70122 * 358.94319 * 20 19 18 30 30 H 1.08994 * 109.47264 * 84.25469 * 1 2 3 31 31 H 1.08998 * 109.46919 * 204.25480 * 1 2 3 32 32 H 1.09001 * 109.47096 * 324.25493 * 1 2 3 33 33 H 1.08008 * 128.08586 * 359.97438 * 6 5 3 34 34 H 1.07997 * 126.07367 * 0.02562 * 9 8 7 35 35 H 1.07997 * 125.98932 * 180.14370 * 10 9 8 36 36 H 1.08994 * 109.47351 * 270.00020 * 12 11 10 37 37 H 1.09004 * 109.46883 * 29.99855 * 12 11 10 38 38 H 1.08993 * 109.46912 * 149.99772 * 12 11 10 39 39 H 1.08994 * 110.72526 * 271.94089 * 18 16 2 40 40 H 1.08998 * 110.71946 * 35.04666 * 18 16 2 41 41 H 1.08997 * 109.88541 * 97.23179 * 19 18 16 42 42 H 1.09003 * 109.88278 * 218.23505 * 19 18 16 43 43 H 0.96999 * 120.00291 * 180.02562 * 24 23 21 44 44 H 1.08993 * 110.36397 * 265.28294 * 29 20 19 45 45 H 1.08997 * 110.36341 * 142.96173 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1686 -0.0772 5 6 1.4002 2.4502 0.0941 6 6 1.9493 3.7560 0.0140 7 6 0.8644 4.5759 0.1565 8 6 0.8641 6.0544 0.1491 9 6 -0.2666 6.8853 0.2919 10 6 0.1521 8.1674 0.2341 11 7 1.4908 8.1623 0.0530 12 6 2.3458 9.3456 -0.0695 13 7 1.9198 6.8300 0.0020 14 8 -0.2021 3.7706 0.3046 15 7 0.1092 2.6033 0.2633 16 6 2.1975 -1.2688 0.0060 17 1 3.2716 -1.0976 -0.0637 18 6 1.8484 -2.1064 1.2646 19 6 2.1063 -3.5547 0.7981 20 7 2.0263 -3.5614 -0.6699 21 6 2.2171 -4.6528 -1.4747 22 1 2.1367 -4.5536 -2.5471 23 6 2.5138 -5.8866 -0.9120 24 7 2.6122 -6.0073 0.3950 25 14 2.7733 -7.3756 -2.0097 26 1 3.9091 -7.1191 -2.9313 27 1 3.0759 -8.5627 -1.1703 28 1 1.5418 -7.6286 -2.8000 29 6 1.7073 -2.1983 -1.1321 30 1 -0.3633 0.1029 -1.0224 31 1 -0.3633 -0.9369 0.4222 32 1 -0.3633 0.8341 0.6003 33 1 2.9828 4.0367 -0.1266 34 1 -1.2859 6.5545 0.4265 35 1 -0.4741 9.0437 0.3142 36 1 2.4200 9.6333 -1.1182 37 1 1.9139 10.1667 0.5028 38 1 3.3395 9.1173 0.3158 39 1 2.5043 -1.8462 2.0952 40 1 0.8034 -1.9682 1.5421 41 1 3.0980 -3.8758 1.1168 42 1 1.3498 -4.2190 1.2159 43 1 2.8198 -6.8694 0.7882 44 1 0.6325 -2.0882 -1.2756 45 1 2.2390 -1.9775 -2.0577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033109664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:38 Heat of formation + Delta-G solvation = 165.461671 kcal Electronic energy + Delta-G solvation = -29129.789074 eV Core-core repulsion = 24961.888386 eV Total energy + Delta-G solvation = -4167.900688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.24257 -41.61627 -39.83459 -37.37004 -34.99328 -34.63553 -33.97168 -32.19743 -31.68996 -30.61733 -29.22694 -27.66021 -27.25412 -26.79191 -25.09661 -23.95552 -23.59395 -22.08229 -21.33202 -20.13449 -20.07024 -18.93191 -18.04237 -18.01934 -17.28760 -16.95291 -16.66401 -15.99545 -15.97397 -15.07393 -14.94206 -14.63288 -14.28435 -14.22698 -14.06835 -13.79249 -13.41444 -13.27122 -13.02555 -13.01072 -12.77057 -12.60603 -12.43008 -12.11879 -11.71918 -11.35103 -11.20797 -10.94128 -10.89134 -10.83352 -10.76914 -10.58986 -10.35527 -10.13165 -9.98461 -9.80863 -9.67567 -9.45459 -8.93594 -8.61031 -8.39616 -6.83418 -5.69717 -3.04079 0.51588 1.20071 1.55527 1.66867 2.59049 2.62457 2.89238 3.15500 3.43169 3.47097 3.48479 3.76928 4.00988 4.04634 4.35885 4.52453 4.58975 4.69038 4.72023 4.84988 4.87354 5.10171 5.23692 5.34639 5.37476 5.43212 5.45355 5.62877 5.63856 5.67110 5.76873 5.80794 5.90572 6.05304 6.19564 6.29486 6.38973 6.50660 6.58240 6.67897 6.91711 7.00512 7.44148 7.56258 7.61271 7.75320 7.83061 8.13299 8.26255 9.22497 9.82294 10.47315 11.41793 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.001808 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.236844 B =15486.158089 C =15696.305775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.583 5.583 3 C 0.592 3.408 4 O -0.523 6.523 5 C -0.012 4.012 6 C -0.140 4.140 7 C 0.037 3.963 8 C 0.139 3.861 9 C -0.244 4.244 10 C 0.058 3.942 11 N -0.365 5.365 12 C 0.099 3.901 13 N -0.259 5.259 14 O 0.130 5.870 15 N -0.317 5.317 16 C 0.122 3.878 17 H 0.109 0.891 18 C -0.153 4.153 19 C 0.180 3.820 20 N -0.602 5.602 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.132 3.868 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.186 0.814 34 H 0.160 0.840 35 H 0.182 0.818 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 33.119 1.937 33.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.314 5.314 3 C 0.377 3.623 4 O -0.398 6.398 5 C -0.170 4.170 6 C -0.164 4.164 7 C -0.027 4.027 8 C -0.025 4.025 9 C -0.273 4.273 10 C -0.087 4.087 11 N -0.149 5.149 12 C -0.042 4.042 13 N -0.085 5.085 14 O 0.055 5.945 15 N -0.019 5.019 16 C 0.018 3.982 17 H 0.127 0.873 18 C -0.192 4.192 19 C 0.055 3.945 20 N -0.329 5.329 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.005 3.995 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.203 0.797 34 H 0.177 0.823 35 H 0.200 0.800 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.093 32.121 1.874 32.747 hybrid contribution -0.164 -0.387 -0.509 0.661 sum -6.257 31.733 1.364 32.373 Atomic orbital electron populations 1.22218 0.78827 1.04326 1.02596 1.47701 1.07657 1.05466 1.70567 1.16917 0.86221 0.81404 0.77770 1.90801 1.12559 1.86227 1.50229 1.23457 0.90053 0.96840 1.06646 1.22654 1.01382 0.89119 1.03291 1.20745 0.86390 0.89742 1.05871 1.18807 0.92570 0.88132 1.03009 1.21569 1.00083 0.91143 1.14549 1.22557 0.84951 0.99768 1.01439 1.48561 1.06132 1.05071 1.55130 1.21981 0.95612 0.82995 1.03603 1.77702 1.20564 0.86776 1.23498 1.84899 1.33073 1.11145 1.65336 1.74301 1.15532 0.95750 1.16324 1.22592 0.97416 0.80472 0.97670 0.87280 1.23276 1.00715 0.98687 0.96544 1.21147 1.01116 0.88741 0.83501 1.44368 1.83176 1.03108 1.02253 1.19010 1.41404 0.85892 0.89432 0.90397 1.24814 1.01834 0.97696 0.96027 1.69946 1.54802 1.23687 1.08504 0.86167 0.78022 0.82156 0.79210 1.21130 1.21574 1.21165 1.21737 0.97249 0.85853 0.94666 0.92420 0.90005 0.88985 0.79662 0.82282 0.80048 0.90225 0.88946 0.88852 0.91774 0.91953 0.93208 0.93552 0.93646 0.95846 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 8.43 59.85 0.50 1.40 16 2 N -0.58 -9.86 2.91 -172.41 -0.50 -10.36 16 3 C 0.59 10.21 7.70 -12.10 -0.09 10.12 16 4 O -0.52 -10.46 16.34 5.37 0.09 -10.37 16 5 C -0.01 -0.18 6.89 -82.62 -0.57 -0.75 16 6 C -0.14 -1.77 10.94 -38.73 -0.42 -2.19 16 7 C 0.04 0.42 7.35 -36.20 -0.27 0.15 16 8 C 0.14 1.39 7.11 -82.88 -0.59 0.80 16 9 C -0.24 -1.75 10.77 -39.67 -0.43 -2.18 16 10 C 0.06 0.29 11.46 -17.26 -0.20 0.10 16 11 N -0.37 -2.41 4.01 -68.21 -0.27 -2.69 16 12 C 0.10 0.23 11.46 59.85 0.69 0.91 16 13 N -0.26 -2.65 12.60 33.36 0.42 -2.22 16 14 O 0.13 1.47 11.20 16.07 0.18 1.65 16 15 N -0.32 -4.12 8.58 33.35 0.29 -3.83 16 16 C 0.12 2.38 3.44 -65.78 -0.23 2.15 16 17 H 0.11 2.33 7.02 -51.93 -0.36 1.96 16 18 C -0.15 -3.00 6.50 -24.89 -0.16 -3.17 16 19 C 0.18 4.45 5.37 -3.06 -0.02 4.43 16 20 N -0.60 -15.75 3.39 -170.08 -0.58 -16.32 16 21 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -27.36 10.31 55.49 0.57 -26.79 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.13 2.87 6.79 -2.53 -0.02 2.85 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.16 6.36 -51.93 -0.33 0.83 16 32 H 0.09 1.21 5.05 -51.93 -0.26 0.95 16 33 H 0.19 2.20 8.06 -52.48 -0.42 1.78 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 36 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 37 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.12 6.47 -51.93 -0.34 0.78 16 41 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 42 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.49 6.94 -51.93 -0.36 0.13 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -35.18 376.09 -6.99 -42.17 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.78 Total: -1.96 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.05 Total: 7.66 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.07 Total: -62.22 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.27 Total: -8.72 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.18 -6.99 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.631 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds