Wall clock time and date at job start Wed Apr 1 2020 03:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00297 * 2 1 4 4 O 1.21493 * 120.00253 * 184.20773 * 3 2 1 5 5 C 1.48347 * 119.99689 * 4.20237 * 3 2 1 6 6 C 1.41888 * 126.84506 * 184.69435 * 5 3 2 7 7 C 1.36728 * 103.82215 * 179.97438 * 6 5 3 8 8 C 1.47852 * 126.81931 * 180.02562 * 7 6 5 9 9 C 1.41043 * 126.06891 * 179.71474 * 8 7 6 10 10 C 1.35004 * 107.84856 * 179.86233 * 9 8 7 11 11 N 1.35098 * 108.02940 * 0.39908 * 10 9 8 12 12 C 1.46498 * 125.90970 * 179.72619 * 11 10 9 13 13 N 1.31819 * 126.06730 * 0.02598 * 8 7 6 14 14 O 1.34456 * 106.36246 * 0.02562 * 7 6 5 15 15 N 1.20881 * 111.73615 * 359.74046 * 14 7 6 16 16 C 1.46504 * 119.99758 * 179.72907 * 2 1 3 17 17 H 1.08997 * 110.88370 * 176.11914 * 16 2 1 18 18 C 1.55159 * 110.99940 * 299.99162 * 16 2 1 19 19 C 1.54328 * 102.93527 * 153.57991 * 18 16 2 20 20 N 1.47019 * 107.27530 * 337.80625 * 19 18 16 21 21 C 1.36936 * 125.65195 * 178.91619 * 20 19 18 22 22 H 1.07999 * 120.00070 * 180.02562 * 21 20 19 23 23 C 1.38811 * 119.99777 * 0.03315 * 21 20 19 24 24 N 1.31624 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47137 * 59.99712 * 25 23 21 27 27 H 1.48504 * 109.47184 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46956 * 299.99529 * 25 23 21 29 29 C 1.47429 * 108.70122 * 358.94319 * 20 19 18 30 30 H 1.08994 * 109.47264 * 84.25469 * 1 2 3 31 31 H 1.08998 * 109.46919 * 204.25480 * 1 2 3 32 32 H 1.09001 * 109.47096 * 324.25493 * 1 2 3 33 33 H 1.08008 * 128.08586 * 359.97438 * 6 5 3 34 34 H 1.07997 * 126.07367 * 0.02562 * 9 8 7 35 35 H 1.07997 * 125.98932 * 180.14370 * 10 9 8 36 36 H 1.08994 * 109.47351 * 270.00020 * 12 11 10 37 37 H 1.09004 * 109.46883 * 29.99855 * 12 11 10 38 38 H 1.08993 * 109.46912 * 149.99772 * 12 11 10 39 39 H 1.08994 * 110.72526 * 271.94089 * 18 16 2 40 40 H 1.08998 * 110.71946 * 35.04666 * 18 16 2 41 41 H 1.08997 * 109.88541 * 97.23179 * 19 18 16 42 42 H 1.09003 * 109.88278 * 218.23505 * 19 18 16 43 43 H 0.96999 * 120.00291 * 180.02562 * 24 23 21 44 44 H 1.08993 * 110.36397 * 265.28294 * 29 20 19 45 45 H 1.08997 * 110.36341 * 142.96173 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1686 -0.0772 5 6 1.4002 2.4502 0.0941 6 6 1.9493 3.7560 0.0140 7 6 0.8644 4.5759 0.1565 8 6 0.8641 6.0544 0.1491 9 6 -0.2666 6.8853 0.2919 10 6 0.1521 8.1674 0.2341 11 7 1.4908 8.1623 0.0530 12 6 2.3458 9.3456 -0.0695 13 7 1.9198 6.8300 0.0020 14 8 -0.2021 3.7706 0.3046 15 7 0.1092 2.6033 0.2633 16 6 2.1975 -1.2688 0.0060 17 1 3.2716 -1.0976 -0.0637 18 6 1.8484 -2.1064 1.2646 19 6 2.1063 -3.5547 0.7981 20 7 2.0263 -3.5614 -0.6699 21 6 2.2171 -4.6528 -1.4747 22 1 2.1367 -4.5536 -2.5471 23 6 2.5138 -5.8866 -0.9120 24 7 2.6122 -6.0073 0.3950 25 14 2.7733 -7.3756 -2.0097 26 1 3.9091 -7.1191 -2.9313 27 1 3.0759 -8.5627 -1.1703 28 1 1.5418 -7.6286 -2.8000 29 6 1.7073 -2.1983 -1.1321 30 1 -0.3633 0.1029 -1.0224 31 1 -0.3633 -0.9369 0.4222 32 1 -0.3633 0.8341 0.6003 33 1 2.9828 4.0367 -0.1266 34 1 -1.2859 6.5545 0.4265 35 1 -0.4741 9.0437 0.3142 36 1 2.4200 9.6333 -1.1182 37 1 1.9139 10.1667 0.5028 38 1 3.3395 9.1173 0.3158 39 1 2.5043 -1.8462 2.0952 40 1 0.8034 -1.9682 1.5421 41 1 3.0980 -3.8758 1.1168 42 1 1.3498 -4.2190 1.2159 43 1 2.8198 -6.8694 0.7882 44 1 0.6325 -2.0882 -1.2756 45 1 2.2390 -1.9775 -2.0577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033109664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:37 Heat of formation + Delta-G solvation = 142.552590 kcal Electronic energy + Delta-G solvation = -29130.782486 eV Core-core repulsion = 24961.888386 eV Total energy + Delta-G solvation = -4168.894101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -46.24917 -42.12051 -41.27681 -39.08599 -36.53431 -35.42445 -34.97076 -33.97281 -32.57006 -31.15513 -31.14097 -29.35315 -28.13573 -27.66556 -26.82718 -25.48494 -24.42354 -23.03842 -22.09119 -21.82637 -21.44025 -20.15149 -19.03954 -18.97036 -18.83860 -18.43696 -17.44763 -17.37136 -16.71015 -16.45911 -16.33983 -15.99718 -15.72030 -15.46919 -14.95254 -14.64531 -14.55295 -14.36537 -14.15339 -14.07266 -13.88182 -13.73028 -13.67004 -13.49740 -13.23877 -12.94946 -12.71362 -12.52802 -12.29906 -12.15611 -12.08994 -11.85013 -11.82926 -11.70242 -11.54657 -11.52328 -11.46796 -10.73179 -10.07902 -9.86201 -9.51031 -8.94734 -7.87020 -5.24339 -0.35835 0.13703 1.05546 1.09119 1.45011 1.49183 1.51665 1.56520 1.82173 1.97391 2.01275 2.48579 2.62172 3.15993 3.31348 3.59979 3.61309 3.68471 3.70897 3.84352 3.94165 4.09762 4.13060 4.18042 4.18935 4.49298 4.50189 4.55935 4.59978 4.63938 4.67419 4.76049 4.76591 4.80466 4.88047 4.93029 4.96149 5.07690 5.36395 5.38950 5.42502 5.57882 5.69716 6.06227 6.08432 6.15386 6.45242 6.67248 6.87010 7.06300 7.71462 8.35534 9.23004 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.001808 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.236844 B =15486.158089 C =15696.305775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.582 5.582 3 C 0.592 3.408 4 O -0.558 6.558 5 C -0.027 4.027 6 C -0.155 4.155 7 C 0.058 3.942 8 C 0.110 3.890 9 C -0.259 4.259 10 C 0.075 3.925 11 N -0.363 5.363 12 C 0.088 3.912 13 N -0.300 5.300 14 O 0.149 5.851 15 N -0.317 5.317 16 C 0.137 3.863 17 H 0.089 0.911 18 C -0.135 4.135 19 C 0.189 3.811 20 N -0.623 5.623 21 C -0.247 4.247 22 H 0.083 0.917 23 C -0.064 4.064 24 N -0.950 5.950 25 Si 0.982 3.018 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.275 1.275 29 C 0.134 3.866 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.230 0.770 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.019 0.981 43 H 0.249 0.751 44 H 0.042 0.958 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 36.229 1.568 37.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.313 5.313 3 C 0.379 3.621 4 O -0.436 6.436 5 C -0.184 4.184 6 C -0.179 4.179 7 C -0.007 4.007 8 C -0.052 4.052 9 C -0.288 4.288 10 C -0.071 4.071 11 N -0.146 5.146 12 C -0.051 4.051 13 N -0.129 5.129 14 O 0.071 5.929 15 N -0.016 5.016 16 C 0.033 3.967 17 H 0.107 0.893 18 C -0.174 4.174 19 C 0.064 3.936 20 N -0.350 5.350 21 C -0.376 4.376 22 H 0.101 0.899 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.810 3.190 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.200 1.200 29 C 0.007 3.993 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.203 0.797 34 H 0.193 0.807 35 H 0.246 0.754 36 H 0.109 0.891 37 H 0.146 0.854 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.032 0.968 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.041 35.244 1.488 36.180 hybrid contribution 0.399 -1.104 -0.413 1.244 sum -7.642 34.140 1.075 35.001 Atomic orbital electron populations 1.22378 0.76815 1.05056 1.03594 1.47664 1.08697 1.04406 1.70489 1.17213 0.85954 0.82184 0.76761 1.90776 1.14186 1.86868 1.51729 1.23037 0.90668 0.95938 1.08741 1.22659 1.01964 0.88738 1.04586 1.20905 0.85442 0.90510 1.03819 1.18883 0.93958 0.87412 1.04938 1.21900 1.00169 0.91637 1.15071 1.23294 0.84508 1.00595 0.98672 1.48974 1.07382 1.04641 1.53648 1.22366 0.95315 0.82354 1.05051 1.77618 1.21659 0.88720 1.24854 1.84873 1.32879 1.10679 1.64455 1.74234 1.14669 0.96540 1.16185 1.22132 0.96589 0.81428 0.96579 0.89334 1.23089 1.02474 0.95061 0.96756 1.20875 0.98180 0.91396 0.83132 1.44630 1.83228 1.04355 1.02779 1.19410 1.41117 0.86952 0.90119 0.89925 1.25690 1.02006 1.00545 0.97443 1.70164 1.55679 1.23883 1.10094 0.85101 0.78225 0.78255 0.77413 1.20474 1.21844 1.20039 1.21824 0.98026 0.84315 0.95095 0.91425 0.89693 0.87673 0.79725 0.80706 0.75378 0.89090 0.85401 0.89436 0.90517 0.89598 0.96804 0.96262 0.94210 0.94076 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.68 8.43 127.77 1.08 2.76 16 2 N -0.58 -19.37 2.91 -817.68 -2.38 -21.75 16 3 C 0.59 20.53 7.70 86.94 0.67 21.20 16 4 O -0.56 -22.95 16.34 -3.69 -0.06 -23.01 16 5 C -0.03 -0.78 6.89 42.85 0.30 -0.49 16 6 C -0.15 -3.93 10.94 22.82 0.25 -3.68 16 7 C 0.06 1.26 7.35 24.46 0.18 1.44 16 8 C 0.11 2.08 7.11 42.38 0.30 2.38 16 9 C -0.26 -3.06 10.77 22.21 0.24 -2.82 16 10 C 0.07 0.49 11.46 83.45 0.96 1.44 16 11 N -0.36 -3.88 4.01 -369.72 -1.48 -5.36 16 12 C 0.09 0.16 11.46 127.77 1.46 1.62 16 13 N -0.30 -5.86 12.60 -48.36 -0.61 -6.47 16 14 O 0.15 3.14 11.20 67.68 0.76 3.90 16 15 N -0.32 -7.82 8.58 -48.99 -0.42 -8.24 16 16 C 0.14 5.38 3.44 46.38 0.16 5.54 16 17 H 0.09 3.88 7.02 -2.39 -0.02 3.87 16 18 C -0.13 -5.27 6.50 31.79 0.21 -5.07 16 19 C 0.19 9.67 5.37 86.73 0.47 10.13 16 20 N -0.62 -33.24 3.39 -692.00 -2.35 -35.58 16 21 C -0.25 -14.26 10.28 84.03 0.86 -13.40 16 22 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 23 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 24 N -0.95 -58.03 10.31 21.65 0.22 -57.81 16 25 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 29 C 0.13 5.82 6.79 86.85 0.59 6.41 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.22 6.36 -2.39 -0.02 2.21 16 32 H 0.11 2.56 5.05 -2.39 -0.01 2.55 16 33 H 0.19 4.60 8.06 -2.91 -0.02 4.57 16 34 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.23 -0.88 8.06 -2.91 -0.02 -0.90 16 36 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.13 -0.66 8.14 -2.38 -0.02 -0.68 16 38 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.09 2.97 6.47 -2.39 -0.02 2.95 16 41 H 0.01 0.79 7.38 -2.39 -0.02 0.77 16 42 H 0.02 1.07 7.51 -2.39 -0.02 1.05 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.04 1.67 6.94 -2.39 -0.02 1.66 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -79.22 376.09 4.92 -74.30 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.03 Total: 7.11 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 8.18 Total: 24.24 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -7.02 Total: -135.22 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.70 Total: -19.11 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -79.22 4.92 -74.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.853 kcal (2) G-P(sol) polarization free energy of solvation -79.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds