Wall clock time and date at job start Wed Apr 1 2020 03:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 119.99857 * 2 1 4 4 O 1.21544 * 120.00100 * 174.18986 * 3 2 1 5 5 C 1.47911 * 120.00232 * 354.19158 * 3 2 1 6 6 C 1.39611 * 121.00731 * 304.78111 * 5 3 2 7 7 C 1.39079 * 119.23166 * 179.79078 * 6 5 3 8 8 O 1.35739 * 119.27178 * 180.24115 * 7 6 5 9 9 N 1.31860 * 121.45659 * 0.45983 * 7 6 5 10 10 C 1.33083 * 121.83019 * 359.77954 * 9 7 6 11 11 N 1.35728 * 133.20843 * 179.97438 * 10 9 7 12 12 C 1.30204 * 109.68223 * 180.02562 * 11 10 9 13 13 N 1.35970 * 110.07602 * 0.02562 * 12 11 10 14 14 C 1.46504 * 126.36431 * 180.02562 * 13 12 11 15 15 C 1.37613 * 107.27355 * 359.97438 * 13 12 11 16 16 C 1.46498 * 120.00235 * 180.02562 * 2 1 3 17 17 H 1.08994 * 110.77918 * 181.78753 * 16 2 1 18 18 C 1.55160 * 110.71568 * 305.02208 * 16 2 1 19 19 C 1.55128 * 101.48699 * 82.69924 * 18 16 2 20 20 N 1.47427 * 104.72472 * 37.29283 * 19 18 16 21 21 C 1.36929 * 125.65098 * 155.81665 * 20 19 18 22 22 H 1.07998 * 120.00100 * 185.26803 * 21 20 19 23 23 C 1.38813 * 120.00187 * 5.27677 * 21 20 19 24 24 N 1.31621 * 119.99935 * 34.92891 * 23 21 20 25 25 Si 1.86801 * 119.99997 * 214.93356 * 23 21 20 26 26 H 1.48500 * 109.46916 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47105 * 299.99521 * 25 23 21 28 28 H 1.48496 * 109.47252 * 59.99628 * 25 23 21 29 29 C 1.47028 * 108.69994 * 335.55571 * 20 19 18 30 30 H 1.08996 * 109.47059 * 274.47484 * 1 2 3 31 31 H 1.09001 * 109.47211 * 34.48139 * 1 2 3 32 32 H 1.09003 * 109.46539 * 154.47704 * 1 2 3 33 33 H 1.07999 * 120.38389 * 359.97438 * 6 5 3 34 34 H 0.96702 * 113.99749 * 270.21554 * 8 7 6 35 35 H 1.07998 * 124.96643 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.46458 * 274.66941 * 14 13 12 37 37 H 1.08995 * 109.47031 * 34.66938 * 14 13 12 38 38 H 1.09003 * 109.47202 * 154.67427 * 14 13 12 39 39 H 1.09006 * 111.00483 * 200.93376 * 18 16 2 40 40 H 1.08995 * 111.00668 * 324.75176 * 18 16 2 41 41 H 1.09005 * 110.49432 * 278.45379 * 19 18 16 42 42 H 1.08997 * 110.34829 * 156.05908 * 19 18 16 43 43 H 0.97004 * 119.99866 * 355.36787 * 24 23 21 44 44 H 1.08995 * 109.88169 * 120.70472 * 29 20 19 45 45 H 1.08999 * 109.88179 * 241.87008 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3496 1.1699 0.1066 5 6 1.4050 2.4448 -0.1296 6 6 0.5447 2.6742 -1.2050 7 6 -0.1302 3.8874 -1.2880 8 8 -0.9707 4.1094 -2.3306 9 7 0.0315 4.8285 -0.3787 10 6 0.8424 4.6651 0.6639 11 7 1.1776 5.4576 1.7136 12 6 2.0267 4.8351 2.4795 13 7 2.2946 3.6017 1.9735 14 6 3.1995 2.6041 2.5499 15 6 1.5567 3.4642 0.8201 16 6 2.1976 -1.2687 -0.0006 17 1 3.2730 -1.0943 0.0313 18 6 1.7507 -2.1610 1.1875 19 6 0.4681 -2.8189 0.6145 20 7 0.7745 -3.0618 -0.8070 21 6 0.1813 -4.0064 -1.6012 22 1 0.5352 -4.1638 -2.6093 23 6 -0.8752 -4.7615 -1.1107 24 7 -1.7407 -4.2205 -0.2796 25 14 -1.0686 -6.5454 -1.6300 26 1 -2.2662 -7.1257 -0.9711 27 1 -1.2307 -6.6169 -3.1044 28 1 0.1378 -7.3118 -1.2270 29 6 1.8183 -2.1177 -1.2322 30 1 -0.3633 0.0802 1.0245 31 1 -0.3634 0.8471 -0.5818 32 1 -0.3632 -0.9274 -0.4428 33 1 0.4026 1.9171 -1.9620 34 1 -0.5448 4.5107 -3.1005 35 1 2.4558 5.2391 3.3845 36 1 4.2177 2.8000 2.2136 37 1 3.1586 2.6619 3.6375 38 1 2.8956 1.6083 2.2271 39 1 2.5077 -2.9102 1.4198 40 1 1.5199 -1.5567 2.0648 41 1 -0.3822 -2.1434 0.7091 42 1 0.2645 -3.7602 1.1249 43 1 -1.6033 -3.3160 0.0428 44 1 2.6910 -2.6654 -1.5879 45 1 1.4351 -1.4729 -2.0231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033138713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:55 Heat of formation + Delta-G solvation = 76.283129 kcal Electronic energy + Delta-G solvation = -31228.541287 eV Core-core repulsion = 27056.773527 eV Total energy + Delta-G solvation = -4171.767760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.78425 -40.36627 -39.42445 -37.90279 -36.50997 -34.87285 -34.54242 -32.78282 -31.85978 -29.55975 -29.31888 -28.38730 -27.39123 -26.55637 -25.04513 -24.13495 -23.30128 -22.41159 -20.60009 -20.28708 -19.42717 -18.71096 -18.27648 -17.75678 -17.51625 -17.29716 -16.40217 -16.30101 -15.60511 -15.43777 -14.93863 -14.63927 -14.43699 -14.30235 -13.98882 -13.79174 -13.61663 -13.52884 -13.21417 -12.84535 -12.52310 -12.35199 -12.14955 -12.05583 -11.98211 -11.89779 -11.22691 -11.12117 -10.99522 -10.96694 -10.78399 -10.52944 -10.38956 -10.18150 -10.04053 -9.76017 -9.40124 -9.02938 -8.74264 -8.62819 -8.34021 -7.08945 -6.30477 -3.14806 0.18458 0.80414 2.05357 2.15116 2.47547 2.81276 2.99251 3.43431 3.44339 3.49831 3.66912 3.92048 4.01594 4.23967 4.35613 4.48637 4.57609 4.74313 4.88263 4.92870 5.04181 5.05590 5.19398 5.21403 5.29402 5.33487 5.42340 5.44559 5.53469 5.61852 5.74637 5.86873 5.91588 5.96617 5.98940 6.18200 6.24870 6.44140 6.58074 6.66416 6.82597 6.84497 7.10052 7.25849 7.35962 7.66133 7.70143 7.87220 8.39776 8.87891 9.73401 10.25623 11.10473 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.003118 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.271428 B = 8978.632134 C = 9913.590991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.580 5.580 3 C 0.557 3.443 4 O -0.535 6.535 5 C -0.044 4.044 6 C -0.140 4.140 7 C 0.332 3.668 8 O -0.472 6.472 9 N -0.454 5.454 10 C 0.273 3.727 11 N -0.485 5.485 12 C 0.290 3.710 13 N -0.480 5.480 14 C 0.077 3.923 15 C 0.023 3.977 16 C 0.124 3.876 17 H 0.106 0.894 18 C -0.144 4.144 19 C 0.133 3.867 20 N -0.602 5.602 21 C -0.352 4.352 22 H 0.071 0.929 23 C -0.021 4.021 24 N -0.910 5.910 25 Si 1.065 2.935 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.130 3.870 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.403 0.597 35 H 0.227 0.773 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.032 0.968 42 H 0.056 0.944 43 H 0.268 0.732 44 H 0.039 0.961 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 15.285 4.971 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.310 5.310 3 C 0.344 3.656 4 O -0.413 6.413 5 C -0.058 4.058 6 C -0.163 4.163 7 C 0.140 3.860 8 O -0.278 6.278 9 N -0.175 5.175 10 C 0.030 3.970 11 N -0.206 5.206 12 C 0.002 3.998 13 N -0.168 5.168 14 C -0.064 4.064 15 C -0.091 4.091 16 C 0.021 3.979 17 H 0.124 0.876 18 C -0.183 4.183 19 C 0.007 3.993 20 N -0.330 5.330 21 C -0.479 4.479 22 H 0.089 0.911 23 C -0.224 4.224 24 N -0.551 5.551 25 Si 0.896 3.104 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.222 1.222 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.177 0.823 34 H 0.260 0.740 35 H 0.243 0.757 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.692 15.081 5.528 17.809 hybrid contribution 1.935 0.045 -0.563 2.016 sum 9.627 15.126 4.964 18.604 Atomic orbital electron populations 1.22427 0.78449 1.05694 1.02244 1.47803 1.07763 1.05107 1.70363 1.18101 0.86987 0.83277 0.77245 1.90780 1.13135 1.87083 1.50318 1.19070 0.98590 0.93560 0.94542 1.22091 0.95550 0.99382 0.99263 1.18471 0.90147 0.88178 0.89167 1.84869 1.35445 1.83497 1.24022 1.65856 1.16270 1.33445 1.01951 1.18889 0.95465 0.88709 0.93940 1.70379 1.16085 1.30119 1.03974 1.25666 0.94131 0.80904 0.99090 1.45159 1.36410 1.15801 1.19478 1.22243 0.93426 0.91704 0.99030 1.19430 0.99749 0.98566 0.91374 1.22257 0.96674 0.81701 0.97258 0.87600 1.23195 1.00338 0.98481 0.96321 1.21851 0.93057 0.98453 0.85891 1.44617 1.43229 1.39037 1.06136 1.19681 1.17618 1.12699 0.97857 0.91132 1.25677 0.91914 1.04518 1.00241 1.70907 1.29487 1.17629 1.37095 0.83464 0.75825 0.75701 0.75454 1.21171 1.21995 1.22196 1.21608 0.93186 0.91135 0.93715 0.92578 0.91067 0.87242 0.82317 0.73964 0.75703 0.89656 0.89256 0.89144 0.90213 0.91620 0.95036 0.92615 0.92024 0.94340 0.95360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.81 8.41 59.85 0.50 1.31 16 2 N -0.58 -8.66 2.82 -172.93 -0.49 -9.15 16 3 C 0.56 8.13 5.79 -12.30 -0.07 8.06 16 4 O -0.53 -8.59 14.45 5.33 0.08 -8.51 16 5 C -0.04 -0.59 4.96 -104.71 -0.52 -1.11 16 6 C -0.14 -1.73 7.65 -38.76 -0.30 -2.03 16 7 C 0.33 4.29 7.71 -17.23 -0.13 4.16 16 8 O -0.47 -5.09 13.55 -18.92 -0.26 -5.34 16 9 N -0.45 -6.91 10.41 -12.77 -0.13 -7.04 16 10 C 0.27 4.05 8.37 -156.97 -1.31 2.74 16 11 N -0.48 -6.48 11.27 -13.59 -0.15 -6.63 16 12 C 0.29 2.64 12.50 -89.77 -1.12 1.52 16 13 N -0.48 -5.07 3.19 -122.88 -0.39 -5.46 16 14 C 0.08 0.63 10.08 59.85 0.60 1.24 16 15 C 0.02 0.32 6.82 -83.66 -0.57 -0.26 16 16 C 0.12 2.01 3.58 -66.10 -0.24 1.77 16 17 H 0.11 1.66 7.01 -51.93 -0.36 1.30 16 18 C -0.14 -2.36 6.54 -24.46 -0.16 -2.52 16 19 C 0.13 2.78 4.28 -2.41 -0.01 2.77 16 20 N -0.60 -14.03 2.95 -169.93 -0.50 -14.54 16 21 C -0.35 -9.42 10.01 -15.06 -0.15 -9.57 16 22 H 0.07 1.91 8.02 -52.49 -0.42 1.49 16 23 C -0.02 -0.58 4.96 -17.43 -0.09 -0.67 16 24 N -0.91 -26.03 12.95 55.49 0.72 -25.31 16 25 Si 1.07 24.55 30.04 -169.99 -5.11 19.45 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 29 C 0.13 2.53 6.28 -3.06 -0.02 2.51 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.07 0.96 4.59 -51.93 -0.24 0.72 16 32 H 0.11 2.00 4.84 -51.93 -0.25 1.75 16 33 H 0.16 1.76 7.44 -52.49 -0.39 1.37 16 34 H 0.40 2.18 9.06 45.56 0.41 2.59 16 35 H 0.23 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.96 5.60 -51.93 -0.29 0.67 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.68 4.45 -51.93 -0.23 0.45 16 42 H 0.06 1.33 7.47 -51.93 -0.39 0.94 16 43 H 0.27 7.49 5.74 -40.82 -0.23 7.26 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -35.48 360.07 -8.96 -44.44 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.57 Total: 2.75 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -3.58 Total: 9.92 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.95 Total: -68.13 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.18 Total: -13.86 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.11 Total: 19.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.48 -8.96 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033138713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.725 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds