Wall clock time and date at job start Wed Apr 1 2020 03:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 119.99857 * 2 1 4 4 O 1.21544 * 120.00100 * 174.18986 * 3 2 1 5 5 C 1.47911 * 120.00232 * 354.19158 * 3 2 1 6 6 C 1.39611 * 121.00731 * 304.78111 * 5 3 2 7 7 C 1.39079 * 119.23166 * 179.79078 * 6 5 3 8 8 O 1.35739 * 119.27178 * 180.24115 * 7 6 5 9 9 N 1.31860 * 121.45659 * 0.45983 * 7 6 5 10 10 C 1.33083 * 121.83019 * 359.77954 * 9 7 6 11 11 N 1.35728 * 133.20843 * 179.97438 * 10 9 7 12 12 C 1.30204 * 109.68223 * 180.02562 * 11 10 9 13 13 N 1.35970 * 110.07602 * 0.02562 * 12 11 10 14 14 C 1.46504 * 126.36431 * 180.02562 * 13 12 11 15 15 C 1.37613 * 107.27355 * 359.97438 * 13 12 11 16 16 C 1.46498 * 120.00235 * 180.02562 * 2 1 3 17 17 H 1.08994 * 110.77918 * 181.78753 * 16 2 1 18 18 C 1.55160 * 110.71568 * 305.02208 * 16 2 1 19 19 C 1.55128 * 101.48699 * 82.69924 * 18 16 2 20 20 N 1.47427 * 104.72472 * 37.29283 * 19 18 16 21 21 C 1.36929 * 125.65098 * 155.81665 * 20 19 18 22 22 H 1.07998 * 120.00100 * 185.26803 * 21 20 19 23 23 C 1.38813 * 120.00187 * 5.27677 * 21 20 19 24 24 N 1.31621 * 119.99935 * 34.92891 * 23 21 20 25 25 Si 1.86801 * 119.99997 * 214.93356 * 23 21 20 26 26 H 1.48500 * 109.46916 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47105 * 299.99521 * 25 23 21 28 28 H 1.48496 * 109.47252 * 59.99628 * 25 23 21 29 29 C 1.47028 * 108.69994 * 335.55571 * 20 19 18 30 30 H 1.08996 * 109.47059 * 274.47484 * 1 2 3 31 31 H 1.09001 * 109.47211 * 34.48139 * 1 2 3 32 32 H 1.09003 * 109.46539 * 154.47704 * 1 2 3 33 33 H 1.07999 * 120.38389 * 359.97438 * 6 5 3 34 34 H 0.96702 * 113.99749 * 270.21554 * 8 7 6 35 35 H 1.07998 * 124.96643 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.46458 * 274.66941 * 14 13 12 37 37 H 1.08995 * 109.47031 * 34.66938 * 14 13 12 38 38 H 1.09003 * 109.47202 * 154.67427 * 14 13 12 39 39 H 1.09006 * 111.00483 * 200.93376 * 18 16 2 40 40 H 1.08995 * 111.00668 * 324.75176 * 18 16 2 41 41 H 1.09005 * 110.49432 * 278.45379 * 19 18 16 42 42 H 1.08997 * 110.34829 * 156.05908 * 19 18 16 43 43 H 0.97004 * 119.99866 * 355.36787 * 24 23 21 44 44 H 1.08995 * 109.88169 * 120.70472 * 29 20 19 45 45 H 1.08999 * 109.88179 * 241.87008 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3496 1.1699 0.1066 5 6 1.4050 2.4448 -0.1296 6 6 0.5447 2.6742 -1.2050 7 6 -0.1302 3.8874 -1.2880 8 8 -0.9707 4.1094 -2.3306 9 7 0.0315 4.8285 -0.3787 10 6 0.8424 4.6651 0.6639 11 7 1.1776 5.4576 1.7136 12 6 2.0267 4.8351 2.4795 13 7 2.2946 3.6017 1.9735 14 6 3.1995 2.6041 2.5499 15 6 1.5567 3.4642 0.8201 16 6 2.1976 -1.2687 -0.0006 17 1 3.2730 -1.0943 0.0313 18 6 1.7507 -2.1610 1.1875 19 6 0.4681 -2.8189 0.6145 20 7 0.7745 -3.0618 -0.8070 21 6 0.1813 -4.0064 -1.6012 22 1 0.5352 -4.1638 -2.6093 23 6 -0.8752 -4.7615 -1.1107 24 7 -1.7407 -4.2205 -0.2796 25 14 -1.0686 -6.5454 -1.6300 26 1 -2.2662 -7.1257 -0.9711 27 1 -1.2307 -6.6169 -3.1044 28 1 0.1378 -7.3118 -1.2270 29 6 1.8183 -2.1177 -1.2322 30 1 -0.3633 0.0802 1.0245 31 1 -0.3634 0.8471 -0.5818 32 1 -0.3632 -0.9274 -0.4428 33 1 0.4026 1.9171 -1.9620 34 1 -0.5448 4.5107 -3.1005 35 1 2.4558 5.2391 3.3845 36 1 4.2177 2.8000 2.2136 37 1 3.1586 2.6619 3.6375 38 1 2.8956 1.6083 2.2271 39 1 2.5077 -2.9102 1.4198 40 1 1.5199 -1.5567 2.0648 41 1 -0.3822 -2.1434 0.7091 42 1 0.2645 -3.7602 1.1249 43 1 -1.6033 -3.3160 0.0428 44 1 2.6910 -2.6654 -1.5879 45 1 1.4351 -1.4729 -2.0231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033138713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:54 Heat of formation + Delta-G solvation = 50.193523 kcal Electronic energy + Delta-G solvation = -31229.672618 eV Core-core repulsion = 27056.773527 eV Total energy + Delta-G solvation = -4172.899090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.67085 -41.57716 -40.37821 -39.34709 -37.40165 -36.29475 -35.49449 -34.28456 -33.10811 -31.03009 -30.44161 -29.86512 -28.17794 -27.81647 -26.48636 -25.60712 -24.23867 -23.43637 -22.11348 -21.63921 -20.50525 -19.82126 -19.62359 -19.17074 -18.57280 -18.30773 -17.55454 -17.27180 -16.67541 -16.43618 -16.31266 -15.78464 -15.62379 -15.61265 -15.39653 -15.05315 -14.89114 -14.54335 -14.41941 -14.26226 -13.79348 -13.63711 -13.41188 -13.27206 -12.93942 -12.86238 -12.75185 -12.58778 -12.42574 -12.19876 -12.06512 -11.98569 -11.89017 -11.86799 -11.66889 -11.40456 -10.41084 -10.34950 -10.04380 -9.81846 -9.64344 -9.01347 -8.43164 -5.21798 -0.77363 -0.14167 1.08757 1.38210 1.46427 1.58473 1.64980 1.66673 1.84858 2.14281 2.48001 2.61303 2.87867 3.18227 3.20695 3.26375 3.48214 3.59418 3.64039 3.80374 3.86189 3.98535 4.01158 4.07446 4.12800 4.33145 4.34701 4.41076 4.41466 4.44121 4.57807 4.64791 4.69806 4.77395 4.85148 4.91681 4.92662 5.07405 5.10936 5.21056 5.35243 5.67583 5.88019 6.04551 6.27741 6.34485 6.61280 6.68358 6.79676 6.88632 7.73253 8.29454 9.00124 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.003118 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.271428 B = 8978.632134 C = 9913.590991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.579 5.579 3 C 0.568 3.432 4 O -0.546 6.546 5 C -0.052 4.052 6 C -0.139 4.139 7 C 0.334 3.666 8 O -0.478 6.478 9 N -0.486 5.486 10 C 0.253 3.747 11 N -0.527 5.527 12 C 0.316 3.684 13 N -0.481 5.481 14 C 0.077 3.923 15 C 0.010 3.990 16 C 0.139 3.861 17 H 0.120 0.880 18 C -0.127 4.127 19 C 0.137 3.863 20 N -0.620 5.620 21 C -0.357 4.357 22 H 0.061 0.939 23 C -0.070 4.070 24 N -0.938 5.938 25 Si 1.113 2.887 26 H -0.293 1.293 27 H -0.278 1.278 28 H -0.284 1.284 29 C 0.129 3.871 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.424 0.576 35 H 0.283 0.717 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.027 0.973 42 H 0.020 0.980 43 H 0.260 0.740 44 H 0.041 0.959 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.885 16.048 6.180 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.310 5.310 3 C 0.356 3.644 4 O -0.425 6.425 5 C -0.066 4.066 6 C -0.162 4.162 7 C 0.143 3.857 8 O -0.288 6.288 9 N -0.208 5.208 10 C 0.010 3.990 11 N -0.248 5.248 12 C 0.029 3.971 13 N -0.169 5.169 14 C -0.064 4.064 15 C -0.105 4.105 16 C 0.036 3.964 17 H 0.138 0.862 18 C -0.166 4.166 19 C 0.012 3.988 20 N -0.348 5.348 21 C -0.485 4.485 22 H 0.079 0.921 23 C -0.267 4.267 24 N -0.582 5.582 25 Si 0.938 3.062 26 H -0.219 1.219 27 H -0.204 1.204 28 H -0.210 1.210 29 C 0.003 3.997 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.187 0.813 34 H 0.286 0.714 35 H 0.298 0.702 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.412 15.868 6.714 19.633 hybrid contribution 1.458 -0.084 -0.950 1.742 sum 10.869 15.784 5.764 20.013 Atomic orbital electron populations 1.22262 0.78468 1.04375 1.02657 1.47727 1.07589 1.04939 1.70732 1.18114 0.86705 0.83237 0.76383 1.90769 1.13696 1.87250 1.50802 1.19011 0.99132 0.93135 0.95286 1.22148 0.95310 0.99461 0.99271 1.18537 0.89892 0.88009 0.89263 1.84818 1.35671 1.83806 1.24529 1.65858 1.17433 1.34579 1.02891 1.19206 0.95805 0.89610 0.94338 1.70379 1.18395 1.31349 1.04722 1.26780 0.91587 0.79621 0.99071 1.45439 1.36183 1.16725 1.18560 1.22409 0.92794 0.89799 1.01368 1.19495 1.00440 0.98075 0.92501 1.22041 0.97353 0.81696 0.95301 0.86173 1.23087 0.97973 0.98601 0.96907 1.21782 0.95313 0.96977 0.84762 1.44783 1.43618 1.39419 1.06977 1.19875 1.17225 1.13400 0.98022 0.92072 1.26861 0.92019 1.07421 1.00409 1.70993 1.30745 1.17606 1.38823 0.82836 0.75689 0.71735 0.75918 1.21936 1.20367 1.21028 1.21704 0.92021 0.90870 0.95127 0.91763 0.89775 0.90568 0.81349 0.71420 0.70217 0.89246 0.85095 0.91534 0.89161 0.89247 0.95572 0.96108 0.92869 0.94115 0.96099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.91 8.41 127.77 1.08 2.99 16 2 N -0.58 -16.60 2.82 -819.30 -2.31 -18.91 16 3 C 0.57 15.73 5.79 86.81 0.50 16.23 16 4 O -0.55 -16.51 14.45 -3.85 -0.06 -16.57 16 5 C -0.05 -1.35 4.96 -19.92 -0.10 -1.45 16 6 C -0.14 -3.37 7.65 22.80 0.17 -3.20 16 7 C 0.33 8.56 7.71 84.89 0.65 9.21 16 8 O -0.48 -10.08 13.55 -90.63 -1.23 -11.31 16 9 N -0.49 -14.76 10.41 -307.35 -3.20 -17.96 16 10 C 0.25 7.37 8.37 134.30 1.12 8.50 16 11 N -0.53 -13.30 11.27 -196.92 -2.22 -15.52 16 12 C 0.32 4.74 12.50 180.05 2.25 7.00 16 13 N -0.48 -8.88 3.19 -542.67 -1.73 -10.61 16 14 C 0.08 1.00 10.08 127.77 1.29 2.28 16 15 C 0.01 0.26 6.82 39.28 0.27 0.53 16 16 C 0.14 4.30 3.58 46.18 0.17 4.47 16 17 H 0.12 3.47 7.01 -2.39 -0.02 3.46 16 18 C -0.13 -3.95 6.54 32.06 0.21 -3.74 16 19 C 0.14 5.80 4.28 86.93 0.37 6.17 16 20 N -0.62 -29.27 2.95 -691.55 -2.04 -31.31 16 21 C -0.36 -19.44 10.01 84.04 0.84 -18.60 16 22 H 0.06 3.36 8.02 -2.91 -0.02 3.34 16 23 C -0.07 -3.87 4.96 84.86 0.42 -3.44 16 24 N -0.94 -55.01 12.95 21.65 0.28 -54.73 16 25 Si 1.11 49.99 30.04 68.60 2.06 52.05 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 29 C 0.13 4.95 6.28 86.73 0.54 5.50 16 30 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 31 H 0.08 2.24 4.59 -2.39 -0.01 2.23 16 32 H 0.08 2.83 4.84 -2.39 -0.01 2.82 16 33 H 0.17 3.63 7.44 -2.91 -0.02 3.61 16 34 H 0.42 4.27 9.06 -74.06 -0.67 3.60 16 35 H 0.28 0.44 8.06 -2.91 -0.02 0.42 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 1.23 5.60 -2.39 -0.01 1.22 16 39 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.03 1.16 4.45 -2.38 -0.01 1.15 16 42 H 0.02 1.01 7.47 -2.39 -0.02 0.99 16 43 H 0.26 15.07 5.74 -92.70 -0.53 14.54 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.02 0.84 8.04 -2.39 -0.02 0.82 16 Total: -1.00 -79.34 360.07 -0.02 -79.36 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.63 Total: 13.07 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 9.79 Total: 32.44 kcal Atomic # 7 Polarization: -137.81 SS G_CDS: -11.23 Total: -149.04 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.28 Total: -27.88 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.06 Total: 52.05 kcal Total: -79.34 -0.02 -79.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033138713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.556 kcal (2) G-P(sol) polarization free energy of solvation -79.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds