Wall clock time and date at job start Wed Apr 1 2020 03:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00084 * 2 1 4 4 O 1.21674 * 120.00027 * 184.45598 * 3 2 1 5 5 C 1.46899 * 119.99832 * 4.45520 * 3 2 1 6 6 C 1.36382 * 126.76496 * 323.05188 * 5 3 2 7 7 N 1.35448 * 109.77366 * 179.70878 * 6 5 3 8 8 C 1.46504 * 124.79507 * 180.24015 * 7 6 5 9 9 C 1.38057 * 110.41803 * 0.26887 * 7 6 5 10 10 C 1.39112 * 133.15706 * 180.02562 * 9 7 6 11 11 C 1.37753 * 119.96159 * 179.97438 * 10 9 7 12 12 C 1.38951 * 120.61168 * 359.97414 * 11 10 9 13 13 F 1.35099 * 119.87679 * 179.97438 * 12 11 10 14 14 C 1.37947 * 120.24611 * 0.02562 * 12 11 10 15 15 C 1.39286 * 119.65020 * 359.97438 * 14 12 11 16 16 C 1.46508 * 120.00221 * 179.97438 * 2 1 3 17 17 H 1.08995 * 110.88813 * 183.87929 * 16 2 1 18 18 C 1.55163 * 111.00075 * 60.00174 * 16 2 1 19 19 C 1.54322 * 102.94201 * 277.42791 * 18 16 2 20 20 N 1.47016 * 107.27393 * 337.80695 * 19 18 16 21 21 C 1.36937 * 125.64989 * 178.98606 * 20 19 18 22 22 H 1.07999 * 119.99986 * 179.97438 * 21 20 19 23 23 C 1.38807 * 119.99823 * 359.97438 * 21 20 19 24 24 N 1.31619 * 120.00317 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47378 * 90.00230 * 25 23 21 27 27 H 1.48506 * 109.47141 * 210.00243 * 25 23 21 28 28 H 1.48495 * 109.47283 * 329.99851 * 25 23 21 29 29 C 1.47429 * 108.70262 * 358.94526 * 20 19 18 30 30 H 1.09001 * 109.46793 * 84.72781 * 1 2 3 31 31 H 1.08999 * 109.46754 * 204.72081 * 1 2 3 32 32 H 1.08988 * 109.47451 * 324.72492 * 1 2 3 33 33 H 1.07996 * 125.11433 * 359.97438 * 6 5 3 34 34 H 1.09003 * 109.46838 * 90.02966 * 8 7 6 35 35 H 1.08998 * 109.47550 * 210.02851 * 8 7 6 36 36 H 1.08996 * 109.46908 * 330.03391 * 8 7 6 37 37 H 1.07990 * 120.02048 * 359.93812 * 10 9 7 38 38 H 1.07999 * 119.69845 * 179.97438 * 11 10 9 39 39 H 1.08004 * 120.17803 * 179.97438 * 14 12 11 40 40 H 1.09003 * 110.71725 * 35.79104 * 18 16 2 41 41 H 1.09000 * 110.71593 * 158.88481 * 18 16 2 42 42 H 1.09000 * 109.88237 * 97.22829 * 19 18 16 43 43 H 1.09003 * 109.88029 * 218.22986 * 19 18 16 44 44 H 0.96997 * 119.99983 * 180.02562 * 24 23 21 45 45 H 1.09006 * 110.36243 * 265.28861 * 29 20 19 46 46 H 1.09000 * 110.36828 * 142.96949 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3528 1.1687 -0.0819 5 6 1.4077 2.4374 0.0988 6 6 0.2022 2.7315 -0.4671 7 7 -0.1561 3.9986 -0.1497 8 6 -1.3952 4.6501 -0.5815 9 6 0.8116 4.5899 0.6376 10 6 0.9272 5.8484 1.2190 11 6 2.0379 6.1589 1.9723 12 6 3.0493 5.2247 2.1599 13 9 4.1324 5.5452 2.9012 14 6 2.9521 3.9717 1.5912 15 6 1.8337 3.6465 0.8275 16 6 2.1976 -1.2688 0.0006 17 1 3.2717 -1.0973 0.0694 18 6 1.8484 -2.1130 -1.2536 19 6 0.5312 -2.8069 -0.8474 20 7 0.4793 -2.8193 0.6218 21 6 -0.5403 -3.3296 1.3801 22 1 -0.4833 -3.2910 2.4579 23 6 -1.6472 -3.8965 0.7635 24 7 -1.7165 -3.9440 -0.5500 25 14 -3.0386 -4.5919 1.7980 26 1 -4.0402 -3.5275 2.0603 27 1 -3.6858 -5.7118 1.0685 28 1 -2.4957 -5.0894 3.0875 29 6 1.7074 -2.1924 1.1435 30 1 -0.3633 0.0944 -1.0233 31 1 -0.3633 -0.9335 0.4298 32 1 -0.3634 0.8389 0.5934 33 1 -0.3813 2.0544 -1.0733 34 1 -2.1778 4.4665 0.1547 35 1 -1.2283 5.7232 -0.6744 36 1 -1.7015 4.2452 -1.5460 37 1 0.1469 6.5818 1.0793 38 1 2.1235 7.1373 2.4214 39 1 3.7391 3.2466 1.7374 40 1 1.6945 -1.4704 -2.1204 41 1 2.6287 -2.8474 -1.4534 42 1 -0.3183 -2.2506 -1.2436 43 1 0.5165 -3.8275 -1.2299 44 1 -2.4902 -4.3398 -0.9808 45 1 2.4568 -2.9524 1.3648 46 1 1.4850 -1.6068 2.0355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033150371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:24 Heat of formation + Delta-G solvation = 30.921083 kcal Electronic energy + Delta-G solvation = -30597.301872 eV Core-core repulsion = 26403.647105 eV Total energy + Delta-G solvation = -4193.654768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.83788 -41.71933 -39.47267 -37.28619 -37.07325 -34.23012 -33.18889 -32.07779 -30.30824 -29.59176 -29.01114 -27.81219 -26.87570 -25.95071 -24.40988 -23.18684 -22.68795 -21.41447 -20.13364 -20.07875 -18.70845 -17.53659 -17.37051 -16.92082 -16.75598 -16.18719 -15.80495 -15.38756 -15.31467 -15.23274 -14.71316 -14.68010 -14.19258 -13.84381 -13.79438 -13.41870 -13.25909 -13.02215 -12.94482 -12.78513 -12.54875 -12.37197 -12.05608 -11.96591 -11.69677 -11.49476 -11.18738 -11.12123 -10.97243 -10.91783 -10.72835 -10.24143 -10.17172 -9.94815 -9.84847 -9.68888 -9.39532 -8.72507 -8.36275 -8.16296 -7.81603 -6.85962 -5.79203 -3.13453 0.75197 1.20145 2.01063 2.44038 3.21688 3.33937 3.41074 3.42133 3.44937 3.72211 4.15543 4.33393 4.37739 4.43277 4.59644 4.72347 4.83300 4.96162 5.06566 5.13794 5.28553 5.35555 5.40510 5.42015 5.53682 5.58291 5.71464 5.75065 5.76352 5.91503 6.01593 6.03093 6.06534 6.23975 6.34995 6.42355 6.49133 6.54043 6.56013 6.65296 6.80462 6.87526 6.92072 7.16508 7.50770 7.56124 7.76198 7.90919 8.16839 8.59705 9.14362 9.73624 10.39277 11.31538 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.002998 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.911168 B = 9338.032411 C =10011.051937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.583 5.583 3 C 0.584 3.416 4 O -0.553 6.553 5 C -0.215 4.215 6 C 0.111 3.889 7 N -0.474 5.474 8 C 0.073 3.927 9 C 0.077 3.923 10 C -0.095 4.095 11 C -0.135 4.135 12 C 0.073 3.927 13 F -0.142 7.142 14 C -0.097 4.097 15 C -0.039 4.039 16 C 0.125 3.875 17 H 0.100 0.900 18 C -0.155 4.155 19 C 0.174 3.826 20 N -0.602 5.602 21 C -0.231 4.231 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.124 3.876 30 H 0.045 0.955 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.185 0.815 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.042 0.958 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 19.648 -0.809 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.314 5.314 3 C 0.373 3.627 4 O -0.432 6.432 5 C -0.225 4.225 6 C -0.019 4.019 7 N -0.155 5.155 8 C -0.068 4.068 9 C -0.027 4.027 10 C -0.115 4.115 11 C -0.155 4.155 12 C 0.053 3.947 13 F -0.121 7.121 14 C -0.116 4.116 15 C -0.044 4.044 16 C 0.021 3.979 17 H 0.118 0.882 18 C -0.195 4.195 19 C 0.050 3.950 20 N -0.329 5.329 21 C -0.359 4.359 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.003 4.003 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.202 0.798 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.250 19.663 -0.970 19.726 hybrid contribution -0.840 -0.419 0.494 1.061 sum 0.410 19.243 -0.476 19.254 Atomic orbital electron populations 1.22489 0.78950 1.06830 1.00692 1.47546 1.07473 1.04875 1.71465 1.17268 0.86533 0.82494 0.76363 1.90742 1.13638 1.87356 1.51477 1.19975 0.97457 0.95098 1.09975 1.22472 0.95163 0.85281 0.99027 1.43615 1.17661 1.11671 1.42585 1.22086 0.84178 0.98892 1.01630 1.18232 0.90375 0.95165 0.98942 1.19765 0.98828 0.93577 0.99359 1.20713 0.93460 0.99748 1.01588 1.17313 0.85764 0.94430 0.97206 1.91482 1.52786 1.93123 1.74677 1.20494 0.98353 0.95522 0.97271 1.18422 0.93992 0.92465 0.99482 1.22239 0.96250 0.82353 0.97053 0.88196 1.23250 1.00803 0.98686 0.96721 1.21221 0.91593 0.98486 0.83695 1.44619 1.17322 1.69094 1.01887 1.19049 0.95101 1.31911 0.89819 0.90418 1.24776 0.98505 1.01066 0.95810 1.69968 1.29995 1.49897 1.06830 0.86152 0.82188 0.78476 0.79137 1.21632 1.21721 1.20719 1.21919 0.90081 0.93504 0.94769 0.93666 0.85241 0.92531 0.79809 0.90531 0.89809 0.89305 0.85231 0.84440 0.84085 0.91947 0.91406 0.93191 0.93969 0.93732 0.95026 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 7.36 59.85 0.44 1.32 16 2 N -0.58 -10.26 2.91 -172.94 -0.50 -10.76 16 3 C 0.58 10.46 7.60 -12.76 -0.10 10.36 16 4 O -0.55 -11.40 16.50 5.21 0.09 -11.31 16 5 C -0.21 -3.27 5.54 -103.31 -0.57 -3.84 16 6 C 0.11 1.32 9.00 -16.62 -0.15 1.17 16 7 N -0.47 -4.78 3.15 -121.58 -0.38 -5.17 16 8 C 0.07 0.40 10.99 59.85 0.66 1.06 16 9 C 0.08 0.91 6.79 -83.93 -0.57 0.34 16 10 C -0.09 -0.90 9.91 -39.43 -0.39 -1.29 16 11 C -0.14 -1.36 9.99 -39.49 -0.39 -1.76 16 12 C 0.07 0.93 7.29 -39.42 -0.29 0.64 16 13 F -0.14 -1.87 17.26 2.25 0.04 -1.83 16 14 C -0.10 -1.40 10.07 -39.30 -0.40 -1.80 16 15 C -0.04 -0.57 6.35 -104.95 -0.67 -1.23 16 16 C 0.13 2.32 3.66 -65.78 -0.24 2.08 16 17 H 0.10 1.85 7.04 -51.93 -0.37 1.49 16 18 C -0.16 -2.88 6.48 -24.89 -0.16 -3.04 16 19 C 0.17 3.94 4.31 -3.07 -0.01 3.92 16 20 N -0.60 -14.20 1.87 -170.08 -0.32 -14.51 16 21 C -0.23 -5.99 9.81 -15.06 -0.15 -6.13 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.13 5.49 -17.43 -0.10 -0.23 16 24 N -0.92 -25.16 10.31 55.49 0.57 -24.59 16 25 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 C 0.12 2.52 6.43 -2.53 -0.02 2.51 16 30 H 0.04 0.68 7.27 -51.93 -0.38 0.31 16 31 H 0.13 2.67 4.40 -51.93 -0.23 2.44 16 32 H 0.06 0.84 5.89 -51.94 -0.31 0.53 16 33 H 0.19 1.81 6.14 -52.49 -0.32 1.49 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.33 8.03 -51.93 -0.42 -0.09 16 36 H 0.09 0.36 8.13 -51.93 -0.42 -0.06 16 37 H 0.13 0.81 8.01 -52.49 -0.42 0.39 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.14 2.16 8.06 -52.48 -0.42 1.73 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.20 6.43 -51.93 -0.33 0.87 16 43 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 44 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -31.61 371.72 -9.12 -40.73 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.09 Total: 1.78 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -3.10 Total: 4.08 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.63 Total: -55.03 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.61 -9.12 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033150371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.646 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds