Wall clock time and date at job start Wed Apr 1 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00084 * 2 1 4 4 O 1.21674 * 120.00027 * 184.45598 * 3 2 1 5 5 C 1.46899 * 119.99832 * 4.45520 * 3 2 1 6 6 C 1.36382 * 126.76496 * 323.05188 * 5 3 2 7 7 N 1.35448 * 109.77366 * 179.70878 * 6 5 3 8 8 C 1.46504 * 124.79507 * 180.24015 * 7 6 5 9 9 C 1.38057 * 110.41803 * 0.26887 * 7 6 5 10 10 C 1.39112 * 133.15706 * 180.02562 * 9 7 6 11 11 C 1.37753 * 119.96159 * 179.97438 * 10 9 7 12 12 C 1.38951 * 120.61168 * 359.97414 * 11 10 9 13 13 F 1.35099 * 119.87679 * 179.97438 * 12 11 10 14 14 C 1.37947 * 120.24611 * 0.02562 * 12 11 10 15 15 C 1.39286 * 119.65020 * 359.97438 * 14 12 11 16 16 C 1.46508 * 120.00221 * 179.97438 * 2 1 3 17 17 H 1.08995 * 110.88813 * 183.87929 * 16 2 1 18 18 C 1.55163 * 111.00075 * 60.00174 * 16 2 1 19 19 C 1.54322 * 102.94201 * 277.42791 * 18 16 2 20 20 N 1.47016 * 107.27393 * 337.80695 * 19 18 16 21 21 C 1.36937 * 125.64989 * 178.98606 * 20 19 18 22 22 H 1.07999 * 119.99986 * 179.97438 * 21 20 19 23 23 C 1.38807 * 119.99823 * 359.97438 * 21 20 19 24 24 N 1.31619 * 120.00317 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47378 * 90.00230 * 25 23 21 27 27 H 1.48506 * 109.47141 * 210.00243 * 25 23 21 28 28 H 1.48495 * 109.47283 * 329.99851 * 25 23 21 29 29 C 1.47429 * 108.70262 * 358.94526 * 20 19 18 30 30 H 1.09001 * 109.46793 * 84.72781 * 1 2 3 31 31 H 1.08999 * 109.46754 * 204.72081 * 1 2 3 32 32 H 1.08988 * 109.47451 * 324.72492 * 1 2 3 33 33 H 1.07996 * 125.11433 * 359.97438 * 6 5 3 34 34 H 1.09003 * 109.46838 * 90.02966 * 8 7 6 35 35 H 1.08998 * 109.47550 * 210.02851 * 8 7 6 36 36 H 1.08996 * 109.46908 * 330.03391 * 8 7 6 37 37 H 1.07990 * 120.02048 * 359.93812 * 10 9 7 38 38 H 1.07999 * 119.69845 * 179.97438 * 11 10 9 39 39 H 1.08004 * 120.17803 * 179.97438 * 14 12 11 40 40 H 1.09003 * 110.71725 * 35.79104 * 18 16 2 41 41 H 1.09000 * 110.71593 * 158.88481 * 18 16 2 42 42 H 1.09000 * 109.88237 * 97.22829 * 19 18 16 43 43 H 1.09003 * 109.88029 * 218.22986 * 19 18 16 44 44 H 0.96997 * 119.99983 * 180.02562 * 24 23 21 45 45 H 1.09006 * 110.36243 * 265.28861 * 29 20 19 46 46 H 1.09000 * 110.36828 * 142.96949 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3528 1.1687 -0.0819 5 6 1.4077 2.4374 0.0988 6 6 0.2022 2.7315 -0.4671 7 7 -0.1561 3.9986 -0.1497 8 6 -1.3952 4.6501 -0.5815 9 6 0.8116 4.5899 0.6376 10 6 0.9272 5.8484 1.2190 11 6 2.0379 6.1589 1.9723 12 6 3.0493 5.2247 2.1599 13 9 4.1324 5.5452 2.9012 14 6 2.9521 3.9717 1.5912 15 6 1.8337 3.6465 0.8275 16 6 2.1976 -1.2688 0.0006 17 1 3.2717 -1.0973 0.0694 18 6 1.8484 -2.1130 -1.2536 19 6 0.5312 -2.8069 -0.8474 20 7 0.4793 -2.8193 0.6218 21 6 -0.5403 -3.3296 1.3801 22 1 -0.4833 -3.2910 2.4579 23 6 -1.6472 -3.8965 0.7635 24 7 -1.7165 -3.9440 -0.5500 25 14 -3.0386 -4.5919 1.7980 26 1 -4.0402 -3.5275 2.0603 27 1 -3.6858 -5.7118 1.0685 28 1 -2.4957 -5.0894 3.0875 29 6 1.7074 -2.1924 1.1435 30 1 -0.3633 0.0944 -1.0233 31 1 -0.3633 -0.9335 0.4298 32 1 -0.3634 0.8389 0.5934 33 1 -0.3813 2.0544 -1.0733 34 1 -2.1778 4.4665 0.1547 35 1 -1.2283 5.7232 -0.6744 36 1 -1.7015 4.2452 -1.5460 37 1 0.1469 6.5818 1.0793 38 1 2.1235 7.1373 2.4214 39 1 3.7391 3.2466 1.7374 40 1 1.6945 -1.4704 -2.1204 41 1 2.6287 -2.8474 -1.4534 42 1 -0.3183 -2.2506 -1.2436 43 1 0.5165 -3.8275 -1.2299 44 1 -2.4902 -4.3398 -0.9808 45 1 2.4568 -2.9524 1.3648 46 1 1.4850 -1.6068 2.0355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033150371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:23 Heat of formation + Delta-G solvation = 14.330084 kcal Electronic energy + Delta-G solvation = -30598.021312 eV Core-core repulsion = 26403.647105 eV Total energy + Delta-G solvation = -4194.374207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.84217 -42.63712 -40.90491 -38.88338 -37.93568 -35.79894 -34.35578 -33.60771 -31.28386 -31.07997 -30.19959 -29.31397 -27.83490 -27.34180 -26.15411 -24.08564 -23.87252 -22.34239 -21.91078 -21.38900 -20.01657 -18.89820 -18.54301 -18.35779 -17.81359 -17.37194 -16.77988 -16.62505 -16.48229 -16.38263 -16.12643 -15.89826 -15.60374 -15.42694 -14.97946 -14.54106 -14.31725 -14.12593 -13.82760 -13.78972 -13.70216 -13.58561 -13.42532 -13.38342 -13.15749 -12.97996 -12.80128 -12.72800 -12.32856 -12.04123 -12.03830 -12.00690 -11.89978 -11.76911 -11.51414 -10.91251 -10.71055 -10.68219 -9.66060 -9.26913 -8.80785 -8.71462 -7.80419 -5.15679 -0.16510 0.29555 0.96625 1.50126 1.51985 1.59684 1.67005 1.94788 2.26361 2.52451 2.67437 3.22591 3.38883 3.52401 3.59225 3.68308 3.72394 3.89985 3.98049 4.00507 4.15636 4.27661 4.32990 4.38029 4.47526 4.50269 4.51944 4.65644 4.66895 4.70281 4.74757 4.79815 4.90280 4.92342 5.00050 5.06731 5.14631 5.17443 5.29493 5.41065 5.51118 5.58807 5.66951 5.72425 5.82912 5.98050 6.15928 6.21922 6.53199 7.14680 7.22567 7.78739 8.43967 9.28865 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.002998 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.911168 B = 9338.032411 C =10011.051937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.585 5.585 3 C 0.585 3.415 4 O -0.591 6.591 5 C -0.263 4.263 6 C 0.136 3.864 7 N -0.462 5.462 8 C 0.062 3.938 9 C 0.071 3.929 10 C -0.074 4.074 11 C -0.132 4.132 12 C 0.066 3.934 13 F -0.149 7.149 14 C -0.132 4.132 15 C -0.066 4.066 16 C 0.133 3.867 17 H 0.101 0.899 18 C -0.140 4.140 19 C 0.189 3.811 20 N -0.613 5.613 21 C -0.239 4.239 22 H 0.077 0.923 23 C -0.052 4.052 24 N -0.943 5.943 25 Si 0.971 3.029 26 H -0.283 1.283 27 H -0.298 1.298 28 H -0.277 1.277 29 C 0.126 3.874 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.206 0.794 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.176 0.824 38 H 0.171 0.829 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.033 0.967 43 H 0.006 0.994 44 H 0.247 0.753 45 H 0.037 0.963 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 22.621 -0.929 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.315 5.315 3 C 0.376 3.624 4 O -0.474 6.474 5 C -0.273 4.273 6 C 0.003 3.997 7 N -0.142 5.142 8 C -0.077 4.077 9 C -0.034 4.034 10 C -0.093 4.093 11 C -0.152 4.152 12 C 0.047 3.953 13 F -0.128 7.128 14 C -0.151 4.151 15 C -0.071 4.071 16 C 0.029 3.971 17 H 0.119 0.881 18 C -0.179 4.179 19 C 0.064 3.936 20 N -0.339 5.339 21 C -0.368 4.368 22 H 0.095 0.905 23 C -0.246 4.246 24 N -0.591 5.591 25 Si 0.800 3.200 26 H -0.209 1.209 27 H -0.224 1.224 28 H -0.203 1.203 29 C 0.000 4.000 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.222 0.778 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.193 0.807 38 H 0.189 0.811 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.024 0.976 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.917 22.677 -1.072 22.721 hybrid contribution -0.187 -1.263 0.555 1.392 sum -1.104 21.414 -0.517 21.449 Atomic orbital electron populations 1.22351 0.78238 1.05524 1.01724 1.47571 1.07805 1.04550 1.71571 1.17677 0.86215 0.83310 0.75188 1.90703 1.15398 1.87944 1.53307 1.19821 0.99506 0.94460 1.13542 1.22667 0.93676 0.86168 0.97236 1.43924 1.18361 1.10884 1.40988 1.22531 0.82193 1.00112 1.02884 1.18476 0.90016 0.95516 0.99349 1.20259 0.99115 0.93107 0.96848 1.21088 0.92464 1.00316 1.01289 1.17580 0.86323 0.94493 0.96953 1.91457 1.53420 1.93090 1.74860 1.20405 0.98669 0.96283 0.99784 1.18629 0.95039 0.93314 1.00125 1.22065 0.96374 0.82662 0.96026 0.88100 1.23118 0.98957 0.98772 0.97081 1.20946 0.93028 0.96464 0.83140 1.44742 1.17795 1.69070 1.02337 1.19301 0.95842 1.31539 0.90125 0.90535 1.25446 1.00540 1.01793 0.96800 1.70146 1.30251 1.50686 1.08019 0.85202 0.79574 0.77522 0.77721 1.20926 1.22437 1.20269 1.21965 0.89076 0.93727 0.95255 0.92000 0.88877 0.90652 0.77786 0.89160 0.87418 0.87503 0.80678 0.81125 0.86937 0.90590 0.90084 0.94917 0.97555 0.94331 0.94555 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.10 7.36 127.77 0.94 3.04 16 2 N -0.59 -20.77 2.91 -819.29 -2.38 -23.15 16 3 C 0.58 21.47 7.60 86.51 0.66 22.12 16 4 O -0.59 -25.58 16.50 -4.27 -0.07 -25.65 16 5 C -0.26 -7.98 5.54 -19.01 -0.11 -8.08 16 6 C 0.14 2.93 9.00 83.70 0.75 3.68 16 7 N -0.46 -7.70 3.15 -538.57 -1.69 -9.39 16 8 C 0.06 0.37 10.99 127.77 1.40 1.77 16 9 C 0.07 1.49 6.79 38.89 0.26 1.75 16 10 C -0.07 -1.08 9.91 22.36 0.22 -0.86 16 11 C -0.13 -2.26 9.99 22.33 0.22 -2.04 16 12 C 0.07 1.68 7.29 22.37 0.16 1.84 16 13 F -0.15 -3.98 17.26 44.97 0.78 -3.20 16 14 C -0.13 -4.02 10.07 22.45 0.23 -3.80 16 15 C -0.07 -1.94 6.35 -20.08 -0.13 -2.07 16 16 C 0.13 5.00 3.66 46.38 0.17 5.17 16 17 H 0.10 3.81 7.04 -2.39 -0.02 3.80 16 18 C -0.14 -5.20 6.48 31.78 0.21 -4.99 16 19 C 0.19 8.71 4.31 86.73 0.37 9.08 16 20 N -0.61 -29.47 1.87 -692.00 -1.29 -30.77 16 21 C -0.24 -12.60 9.81 84.03 0.82 -11.78 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.05 -2.76 5.49 84.86 0.47 -2.29 16 24 N -0.94 -52.52 10.31 21.65 0.22 -52.29 16 25 Si 0.97 43.41 29.55 68.60 2.03 45.44 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 28 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 29 C 0.13 5.22 6.43 86.85 0.56 5.78 16 30 H 0.06 1.79 7.27 -2.39 -0.02 1.78 16 31 H 0.09 3.87 4.40 -2.39 -0.01 3.86 16 32 H 0.08 2.15 5.89 -2.39 -0.01 2.13 16 33 H 0.21 3.43 6.14 -2.91 -0.02 3.41 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.11 0.19 8.03 -2.39 -0.02 0.18 16 36 H 0.11 0.32 8.13 -2.39 -0.02 0.31 16 37 H 0.18 1.00 8.01 -2.92 -0.02 0.98 16 38 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.11 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.03 1.61 6.43 -2.39 -0.02 1.60 16 43 H 0.01 0.33 7.50 -2.39 -0.02 0.31 16 44 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 45 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.76 371.72 5.81 -66.94 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.01 Total: 13.73 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.22 Total: 18.34 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.15 Total: -115.60 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.07 Total: -25.65 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -72.76 5.81 -66.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033150371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.274 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds