Wall clock time and date at job start Wed Apr 1 2020 03:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47341 * 2 1 4 4 C 1.34782 * 119.99821 * 82.78744 * 3 2 1 5 5 O 1.21558 * 120.00062 * 183.28416 * 4 3 2 6 6 C 1.47849 * 119.99880 * 3.27902 * 4 3 2 7 7 C 1.39720 * 119.43853 * 173.11061 * 6 4 3 8 8 C 1.36992 * 119.59269 * 180.02562 * 7 6 4 9 9 C 1.39893 * 118.37074 * 0.27521 * 8 7 6 10 10 N 1.35433 * 133.68244 * 180.47582 * 9 8 7 11 11 C 1.30927 * 109.56875 * 179.46923 * 10 9 8 12 12 O 1.35175 * 125.00035 * 179.77152 * 11 10 9 13 13 N 1.36389 * 110.00545 * 359.73834 * 11 10 9 14 14 H 0.97002 * 126.31809 * 179.97438 * 13 11 10 15 15 C 1.38250 * 107.36219 * 359.97438 * 13 11 10 16 16 N 1.31768 * 133.71967 * 180.02562 * 15 13 11 17 17 C 1.46494 * 120.00323 * 262.78949 * 3 2 1 18 18 H 1.08996 * 110.88688 * 356.11579 * 17 3 2 19 19 C 1.55155 * 111.00838 * 120.00115 * 17 3 2 20 20 C 1.54321 * 102.94421 * 153.57568 * 19 17 3 21 21 N 1.47024 * 107.27353 * 337.80323 * 20 19 17 22 22 C 1.36939 * 125.64952 * 178.98448 * 21 20 19 23 23 H 1.08001 * 119.99989 * 179.97438 * 22 21 20 24 24 C 1.38807 * 119.99872 * 359.97438 * 22 21 20 25 25 N 1.31622 * 120.00144 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99826 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47126 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.46987 * 120.00063 * 26 24 22 29 29 H 1.48495 * 109.47155 * 239.99578 * 26 24 22 30 30 C 1.47427 * 108.70143 * 358.94442 * 21 20 19 31 31 H 1.08998 * 109.46782 * 299.99701 * 1 2 3 32 32 H 1.08998 * 109.47086 * 59.99634 * 1 2 3 33 33 H 1.09000 * 109.47188 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46468 * 240.00345 * 2 1 3 35 35 H 1.08998 * 109.47086 * 120.00366 * 2 1 3 36 36 H 1.08001 * 120.20049 * 359.97438 * 7 6 4 37 37 H 1.08006 * 120.81419 * 180.02562 * 8 7 6 38 38 H 0.96700 * 114.00115 * 269.96350 * 12 11 10 39 39 H 1.09004 * 110.72032 * 271.93999 * 19 17 3 40 40 H 1.09005 * 110.71918 * 35.20925 * 19 17 3 41 41 H 1.08997 * 109.88528 * 97.22358 * 20 19 17 42 42 H 1.09002 * 109.88355 * 218.38751 * 20 19 17 43 43 H 0.97002 * 119.99699 * 179.97438 * 25 24 22 44 44 H 1.08998 * 110.36294 * 265.29098 * 30 21 20 45 45 H 1.08998 * 110.36801 * 142.96084 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1049 2.0653 1.1580 5 8 2.4531 3.2299 1.1514 6 6 1.7761 1.3993 2.4364 7 6 2.0072 2.0707 3.6398 8 6 1.7042 1.4563 4.8262 9 6 1.1739 0.1624 4.7883 10 7 0.7661 -0.7096 5.7409 11 6 0.3316 -1.8069 5.1740 12 8 -0.1448 -2.8852 5.8354 13 7 0.4298 -1.7017 3.8177 14 1 0.1749 -2.3766 3.1692 15 6 0.9595 -0.4558 3.5378 16 7 1.2657 0.1738 2.4214 17 6 2.4127 2.0187 -1.2586 18 1 2.3487 1.3142 -2.0878 19 6 1.5554 3.2821 -1.5346 20 6 2.4847 4.1450 -2.4141 21 7 3.8628 3.6997 -2.1609 22 6 4.9866 4.2011 -2.7617 23 1 5.9582 3.8049 -2.5057 24 6 4.8770 5.2186 -3.6995 25 7 3.6929 5.7010 -4.0118 26 14 6.4101 5.9030 -4.5185 27 1 7.6074 5.1960 -3.9971 28 1 6.3175 5.7040 -5.9872 29 1 6.5241 7.3536 -4.2218 30 6 3.8345 2.6247 -1.1524 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.4229 3.0674 3.6347 37 1 1.8744 1.9572 5.7678 38 1 0.5313 -3.5389 6.0605 39 1 0.6460 3.0204 -2.0756 40 1 1.3172 3.7973 -0.6041 41 1 2.2366 4.0031 -3.4660 42 1 2.3793 5.1959 -2.1448 43 1 3.6164 6.4123 -4.6669 44 1 3.9985 3.0350 -0.1560 45 1 4.5867 1.8699 -1.3814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033934798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:56 Heat of formation + Delta-G solvation = 54.972363 kcal Electronic energy + Delta-G solvation = -30573.137061 eV Core-core repulsion = 26400.445197 eV Total energy + Delta-G solvation = -4172.691864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.54300 -41.63483 -39.81761 -38.52348 -37.77139 -36.87060 -34.94380 -34.23974 -32.46477 -31.59968 -31.00459 -30.51922 -28.65319 -26.60775 -25.54946 -24.61677 -24.03920 -22.88996 -22.60516 -21.97723 -20.80035 -20.24409 -19.03423 -18.91641 -18.53374 -18.10384 -17.29322 -17.17502 -16.65327 -16.28557 -16.23408 -15.90401 -15.62702 -15.30786 -15.12372 -14.67323 -14.44954 -14.16157 -14.09224 -13.94540 -13.63357 -13.51354 -13.23071 -13.19924 -12.90171 -12.80450 -12.73645 -12.47998 -12.21651 -12.13244 -12.06335 -11.96740 -11.93119 -11.77484 -11.46305 -10.86160 -10.70778 -10.16639 -10.07131 -9.66704 -9.49792 -8.83990 -7.82838 -5.18765 -0.77424 0.05900 0.94805 1.22738 1.45627 1.48158 1.58347 1.80910 1.86184 2.43165 2.51978 2.70561 3.03825 3.28875 3.35666 3.63586 3.73616 3.79762 3.92687 3.95158 4.04200 4.18439 4.31184 4.47115 4.52652 4.56644 4.60208 4.73746 4.78062 4.87926 4.91536 4.92132 5.00305 5.04663 5.15234 5.22394 5.33308 5.44756 5.53143 5.66396 5.68418 5.73467 5.80293 6.20393 6.28728 6.43125 6.46949 6.64688 7.10251 7.13163 7.77964 8.43963 9.28000 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.002432 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.145225 B =11511.337393 C =11965.542145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.098 3.902 3 N -0.579 5.579 4 C 0.561 3.439 5 O -0.550 6.550 6 C 0.106 3.894 7 C -0.120 4.120 8 C -0.023 4.023 9 C 0.027 3.973 10 N -0.514 5.514 11 C 0.498 3.502 12 O -0.434 6.434 13 N -0.570 5.570 14 H 0.445 0.555 15 C 0.232 3.768 16 N -0.428 5.428 17 C 0.149 3.851 18 H 0.114 0.886 19 C -0.137 4.137 20 C 0.196 3.804 21 N -0.622 5.622 22 C -0.239 4.239 23 H 0.082 0.918 24 C -0.070 4.070 25 N -0.953 5.953 26 Si 0.983 3.017 27 H -0.265 1.265 28 H -0.288 1.288 29 H -0.294 1.294 30 C 0.123 3.877 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.173 0.827 38 H 0.442 0.558 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.019 0.981 42 H -0.003 1.003 43 H 0.247 0.753 44 H 0.031 0.969 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -23.222 19.217 31.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 N -0.309 5.309 4 C 0.348 3.652 5 O -0.428 6.428 6 C -0.041 4.041 7 C -0.143 4.143 8 C -0.050 4.050 9 C -0.095 4.095 10 N -0.247 5.247 11 C 0.192 3.808 12 O -0.240 6.240 13 N -0.199 5.199 14 H 0.289 0.711 15 C -0.007 4.007 16 N -0.145 5.145 17 C 0.044 3.956 18 H 0.132 0.868 19 C -0.176 4.176 20 C 0.070 3.930 21 N -0.349 5.349 22 C -0.368 4.368 23 H 0.099 0.901 24 C -0.262 4.262 25 N -0.602 5.602 26 Si 0.811 3.189 27 H -0.189 1.189 28 H -0.215 1.215 29 H -0.221 1.221 30 C -0.003 4.003 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.175 0.825 37 H 0.191 0.809 38 H 0.307 0.693 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.015 0.985 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.753 -22.630 19.192 31.234 hybrid contribution 0.945 0.504 -1.011 1.473 sum -8.808 -22.126 18.181 29.961 Atomic orbital electron populations 1.21965 0.95144 1.02645 1.00589 1.22343 0.95309 0.79877 1.04753 1.47901 1.62467 1.15405 1.05134 1.18124 0.77985 0.85517 0.83526 1.90855 1.48060 1.17175 1.86672 1.20726 0.99725 0.89775 0.93834 1.21610 0.99915 1.02157 0.90636 1.20652 0.94187 0.90430 0.99770 1.19912 1.03117 0.96667 0.89810 1.70658 1.20782 1.01997 1.31241 1.20296 0.92441 0.89744 0.78319 1.84814 1.37499 1.29324 1.72388 1.42927 1.54058 1.14235 1.08718 0.71091 1.18796 1.01421 0.88959 0.91532 1.66923 1.12497 1.07890 1.27148 1.22163 0.93809 0.94164 0.85438 0.86779 1.23019 0.98149 0.96501 0.99964 1.20763 0.82840 0.94150 0.95203 1.44636 1.03093 1.40860 1.46304 1.19493 0.86441 1.14461 1.16448 0.90066 1.25710 1.00091 0.99630 1.00803 1.70216 1.22918 1.30352 1.36747 0.84945 0.78778 0.77485 0.77719 1.18932 1.21463 1.22107 1.21966 0.95362 0.90226 0.92767 0.93887 0.93958 0.89682 0.89850 0.86396 0.82489 0.80916 0.69349 0.90105 0.91898 0.96317 0.98476 0.94402 0.95133 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.57 71.98 0.69 -2.01 16 2 C 0.10 2.04 5.73 86.38 0.49 2.54 16 3 N -0.58 -17.28 2.58 -793.49 -2.05 -19.33 16 4 C 0.56 18.38 6.86 86.79 0.60 18.97 16 5 O -0.55 -22.74 12.35 -3.90 -0.05 -22.79 16 6 C 0.11 2.71 6.52 41.91 0.27 2.98 16 7 C -0.12 -2.70 9.55 22.34 0.21 -2.49 16 8 C -0.02 -0.43 10.16 22.38 0.23 -0.21 16 9 C 0.03 0.52 7.24 39.70 0.29 0.81 16 10 N -0.51 -9.49 11.30 -306.04 -3.46 -12.95 16 11 C 0.50 5.87 9.39 179.70 1.69 7.56 16 12 O -0.43 -2.15 13.62 -84.54 -1.15 -3.31 16 13 N -0.57 -5.96 6.25 -307.04 -1.92 -7.88 16 14 H 0.45 1.71 8.96 -92.71 -0.83 0.88 16 15 C 0.23 4.16 8.46 134.00 1.13 5.29 16 16 N -0.43 -8.88 4.30 -181.68 -0.78 -9.66 16 17 C 0.15 5.43 3.56 46.39 0.16 5.60 16 18 H 0.11 3.73 7.77 -2.39 -0.02 3.71 16 19 C -0.14 -5.74 6.33 31.78 0.20 -5.54 16 20 C 0.20 10.60 5.37 86.73 0.47 11.06 16 21 N -0.62 -34.74 3.39 -691.97 -2.35 -37.09 16 22 C -0.24 -14.27 10.28 84.03 0.86 -13.41 16 23 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 24 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 25 N -0.95 -60.21 10.31 21.65 0.22 -59.99 16 26 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 29 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 30 C 0.12 5.60 6.58 86.86 0.57 6.17 16 31 H 0.04 0.93 6.74 -2.39 -0.02 0.91 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.49 7.79 -2.38 -0.02 1.48 16 35 H 0.12 2.28 5.23 -3.88 -0.02 2.26 16 36 H 0.16 3.59 7.62 -2.91 -0.02 3.57 16 37 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.44 -2.88 9.06 -74.06 -0.67 -3.55 16 39 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 40 H 0.06 2.80 6.14 -2.38 -0.01 2.79 16 41 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16 42 H 0.00 -0.19 7.51 -2.39 -0.02 -0.21 16 43 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.03 1.52 5.65 -2.39 -0.01 1.51 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -83.84 362.67 -1.61 -85.44 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -0.44 Total: 4.14 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: 8.33 Total: 33.63 kcal Atomic # 7 Polarization: -136.57 SS G_CDS: -10.33 Total: -146.90 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.20 Total: -26.09 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -83.84 -1.61 -85.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033934798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.414 kcal (2) G-P(sol) polarization free energy of solvation -83.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds