Wall clock time and date at job start Wed Apr 1 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46689 * 2 1 4 4 C 1.34771 * 119.99950 * 82.41083 * 3 2 1 5 5 O 1.21555 * 119.99955 * 183.44441 * 4 3 2 6 6 C 1.47852 * 120.00110 * 3.44366 * 4 3 2 7 7 C 1.39721 * 119.43709 * 173.07951 * 6 4 3 8 8 C 1.36993 * 119.59359 * 180.02562 * 7 6 4 9 9 C 1.39898 * 118.37093 * 0.02562 * 8 7 6 10 10 N 1.35418 * 133.68803 * 180.02562 * 9 8 7 11 11 C 1.30938 * 109.57073 * 179.97438 * 10 9 8 12 12 O 1.35173 * 124.99656 * 180.02562 * 11 10 9 13 13 N 1.36386 * 110.00041 * 359.97438 * 11 10 9 14 14 H 0.97009 * 126.31411 * 179.97438 * 13 11 10 15 15 C 1.38254 * 107.36435 * 0.02562 * 13 11 10 16 16 N 1.31763 * 133.71133 * 180.02562 * 15 13 11 17 17 C 1.46500 * 119.99764 * 262.40387 * 3 2 1 18 18 H 1.08998 * 110.64201 * 182.93065 * 17 3 2 19 19 C 1.55157 * 110.71825 * 59.59387 * 17 3 2 20 20 C 1.54904 * 101.58536 * 277.13577 * 19 17 3 21 21 N 1.47426 * 104.83344 * 322.99433 * 20 19 17 22 22 C 1.36933 * 125.65030 * 204.16422 * 21 20 19 23 23 H 1.07997 * 120.00369 * 179.97438 * 22 21 20 24 24 C 1.38820 * 120.00042 * 359.95533 * 22 21 20 25 25 N 1.31621 * 119.99810 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00189 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47093 * 60.00154 * 26 24 22 28 28 H 1.48497 * 109.46974 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46862 * 299.99890 * 26 24 22 30 30 C 1.47023 * 108.70406 * 24.12405 * 21 20 19 31 31 H 1.09006 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47209 * 300.00058 * 1 2 3 33 33 H 1.08997 * 109.47523 * 60.00224 * 1 2 3 34 34 H 1.08997 * 109.46867 * 240.00077 * 2 1 3 35 35 H 1.09001 * 109.46805 * 119.99786 * 2 1 3 36 36 H 1.07997 * 120.20248 * 359.75293 * 7 6 4 37 37 H 1.08001 * 120.81989 * 180.02562 * 8 7 6 38 38 H 0.96708 * 113.99830 * 269.96906 * 12 11 10 39 39 H 1.09005 * 111.00573 * 35.21366 * 19 17 3 40 40 H 1.08998 * 111.00297 * 159.05948 * 19 17 3 41 41 H 1.08998 * 110.37187 * 204.15326 * 20 19 17 42 42 H 1.09006 * 110.36536 * 81.82705 * 20 19 17 43 43 H 0.97002 * 120.00406 * 180.02562 * 25 24 22 44 44 H 1.08993 * 109.88300 * 239.52530 * 30 21 20 45 45 H 1.09003 * 109.88340 * 118.35709 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0975 2.0680 1.1569 5 8 2.4428 3.2334 1.1495 6 6 1.7644 1.4038 2.4352 7 6 1.9887 2.0780 3.6382 8 6 1.6817 1.4654 4.8245 9 6 1.1493 0.1722 4.7866 10 7 0.7448 -0.7011 5.7392 11 6 0.3161 -1.8008 5.1725 12 8 -0.1604 -2.8790 5.8341 13 7 0.4199 -1.6979 3.8165 14 1 0.1699 -2.3749 3.1682 15 6 0.9482 -0.4514 3.5366 16 7 1.2579 0.1765 2.4203 17 6 2.4205 2.0160 -1.2576 18 1 2.8053 3.0194 -1.0758 19 6 1.2353 2.0513 -2.2583 20 6 1.3062 0.6320 -2.8747 21 7 2.7469 0.3379 -2.9805 22 6 3.3186 -0.5482 -3.8540 23 1 4.3889 -0.6928 -3.8534 24 6 2.5224 -1.2610 -4.7401 25 7 1.2180 -1.0854 -4.7402 26 14 3.3022 -2.4703 -5.9312 27 1 4.0210 -3.5225 -5.1687 28 1 2.2441 -3.0979 -6.7629 29 1 4.2613 -1.7522 -6.8086 30 6 3.4684 1.1544 -1.9934 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.4056 3.0742 3.6332 37 1 1.8466 1.9683 5.7659 38 1 0.5166 -3.5304 6.0637 39 1 0.2895 2.2048 -1.7385 40 1 1.3894 2.8160 -3.0195 41 1 0.8438 0.6235 -3.8618 42 1 0.8186 -0.0906 -2.2202 43 1 0.6616 -1.5837 -5.3591 44 1 4.1880 1.7978 -2.4995 45 1 3.9822 0.5078 -1.2819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033934799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:04 Heat of formation + Delta-G solvation = 85.231211 kcal Electronic energy + Delta-G solvation = -31059.753479 eV Core-core repulsion = 26888.373737 eV Total energy + Delta-G solvation = -4171.379742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -42.74149 -40.41203 -38.88887 -37.66459 -36.99870 -34.93132 -33.98202 -32.32144 -31.53246 -30.34284 -29.90860 -29.07421 -27.03214 -24.92409 -24.39198 -23.67156 -22.83331 -22.12035 -21.16210 -20.16789 -19.74709 -18.93939 -18.16183 -17.83279 -17.24837 -16.96467 -16.53126 -15.97432 -15.36992 -15.17623 -14.70641 -14.69107 -14.30779 -14.01643 -13.78663 -13.60329 -13.31028 -12.80853 -12.64446 -12.57820 -12.37058 -12.04063 -11.92791 -11.67158 -11.59374 -11.42162 -11.22916 -11.05152 -10.86902 -10.79523 -10.42729 -10.30654 -10.16420 -9.95498 -9.85880 -9.55600 -9.27336 -8.98820 -8.74431 -8.64655 -8.20529 -6.85513 -5.67709 -3.09511 0.10641 0.91786 1.67903 2.04806 2.83006 3.07018 3.23963 3.37848 3.42719 3.43451 3.69051 3.88019 4.21192 4.46659 4.49632 4.61460 4.75924 5.24876 5.34251 5.42585 5.46690 5.48168 5.66136 5.66469 5.70238 5.75675 5.86313 5.91318 6.00328 6.10134 6.16044 6.23840 6.33790 6.38577 6.47811 6.59987 6.63959 6.75926 6.80933 6.95245 7.07722 7.17881 7.40902 7.51666 7.60441 7.73128 7.84370 8.31302 8.34466 9.19416 9.79934 10.44705 11.35396 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.003153 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.494469 B = 8878.677668 C =10243.262995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.090 3.910 3 N -0.564 5.564 4 C 0.566 3.434 5 O -0.542 6.542 6 C 0.125 3.875 7 C -0.119 4.119 8 C -0.029 4.029 9 C 0.033 3.967 10 N -0.481 5.481 11 C 0.473 3.527 12 O -0.438 6.438 13 N -0.584 5.584 14 H 0.431 0.569 15 C 0.240 3.760 16 N -0.427 5.427 17 C 0.123 3.877 18 H 0.101 0.899 19 C -0.155 4.155 20 C 0.141 3.859 21 N -0.602 5.602 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.913 3.087 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.128 3.872 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.415 0.585 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.030 0.970 43 H 0.252 0.748 44 H 0.034 0.966 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -0.449 19.700 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 N -0.293 5.293 4 C 0.352 3.648 5 O -0.420 6.420 6 C -0.022 4.022 7 C -0.142 4.142 8 C -0.057 4.057 9 C -0.089 4.089 10 N -0.213 5.213 11 C 0.168 3.832 12 O -0.240 6.240 13 N -0.211 5.211 14 H 0.272 0.728 15 C 0.003 3.997 16 N -0.144 5.144 17 C 0.019 3.981 18 H 0.119 0.881 19 C -0.194 4.194 20 C 0.017 3.983 21 N -0.329 5.329 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.744 3.256 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.001 3.999 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.274 0.726 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.568 -0.104 19.623 19.791 hybrid contribution 0.577 -1.443 -0.896 1.794 sum -1.991 -1.548 18.728 18.897 Atomic orbital electron populations 1.22102 0.96195 1.01386 1.01192 1.22318 0.94591 0.81393 1.04911 1.47898 1.60835 1.14711 1.05886 1.17717 0.78616 0.85696 0.82796 1.90769 1.49281 1.15531 1.86399 1.21100 0.97588 0.88745 0.94809 1.21577 1.00030 1.02007 0.90595 1.20429 0.95233 0.90604 0.99395 1.19665 1.03583 0.96336 0.89322 1.70633 1.19055 1.00863 1.30753 1.20220 0.95110 0.89676 0.78203 1.84827 1.36334 1.29832 1.72958 1.43048 1.54497 1.15039 1.08552 0.72771 1.18753 1.01043 0.87921 0.91986 1.67229 1.12064 1.08454 1.26626 1.22243 0.96488 0.96935 0.82390 0.88123 1.23386 0.96515 1.01957 0.97583 1.22221 0.85543 0.88685 1.01860 1.44531 1.02461 1.46731 1.39166 1.19017 0.91822 1.13996 1.10265 0.90618 1.24756 0.95558 1.00310 0.99823 1.69794 1.02740 1.44534 1.39855 0.86177 0.77824 0.80810 0.80812 1.21324 1.21628 1.21198 1.21623 0.93529 0.93184 0.91546 0.92651 0.93531 0.92032 0.88031 0.88282 0.82328 0.83188 0.72555 0.91896 0.91114 0.87855 0.95193 0.93739 0.94831 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.69 37.16 0.32 -2.01 16 2 C 0.09 1.50 4.58 -4.04 -0.02 1.48 16 3 N -0.56 -9.64 2.45 -165.12 -0.40 -10.05 16 4 C 0.57 9.31 7.58 -12.33 -0.09 9.22 16 5 O -0.54 -9.87 15.69 5.32 0.08 -9.78 16 6 C 0.13 1.74 6.51 -82.97 -0.54 1.20 16 7 C -0.12 -1.35 9.54 -39.48 -0.38 -1.73 16 8 C -0.03 -0.30 10.16 -39.41 -0.40 -0.70 16 9 C 0.03 0.39 7.24 -84.56 -0.61 -0.23 16 10 N -0.48 -5.52 11.30 -12.11 -0.14 -5.66 16 11 C 0.47 4.28 9.39 -88.77 -0.83 3.44 16 12 O -0.44 -2.57 13.62 -17.22 -0.23 -2.81 16 13 N -0.58 -5.26 6.25 -13.33 -0.08 -5.34 16 14 H 0.43 2.86 8.96 -40.82 -0.37 2.49 16 15 C 0.24 2.86 8.46 -155.52 -1.32 1.54 16 16 N -0.43 -5.68 4.29 -8.77 -0.04 -5.72 16 17 C 0.12 2.26 3.58 -66.09 -0.24 2.03 16 18 H 0.10 1.83 7.01 -51.93 -0.36 1.47 16 19 C -0.16 -2.96 6.16 -24.59 -0.15 -3.11 16 20 C 0.14 3.24 4.78 -2.53 -0.01 3.23 16 21 N -0.60 -14.70 2.89 -170.07 -0.49 -15.19 16 22 C -0.22 -5.98 10.27 -15.06 -0.15 -6.14 16 23 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -25.78 10.09 55.49 0.56 -25.22 16 26 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 C 0.13 2.65 6.17 -3.06 -0.02 2.63 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.70 6.72 -51.93 -0.35 0.35 16 33 H 0.06 1.04 5.16 -51.93 -0.27 0.77 16 34 H 0.10 2.04 4.88 -51.93 -0.25 1.78 16 35 H 0.10 1.55 5.25 -52.51 -0.28 1.28 16 36 H 0.16 1.60 7.62 -52.49 -0.40 1.20 16 37 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.41 0.13 9.06 45.56 0.41 0.55 16 39 H 0.06 1.13 6.97 -51.93 -0.36 0.77 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.10 2.74 5.87 -51.93 -0.31 2.43 16 42 H 0.03 0.70 4.19 -51.93 -0.22 0.48 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.56 7.94 -51.93 -0.41 0.15 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -33.00 354.30 -9.36 -42.37 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.40 Total: 5.04 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -4.54 Total: 10.52 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -0.59 Total: -67.17 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.15 Total: -12.59 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.00 -9.36 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033934799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.598 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds