Wall clock time and date at job start Wed Apr 1 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46972 * 2 1 4 4 C 1.34771 * 119.99857 * 250.34406 * 3 2 1 5 5 O 1.21643 * 120.00304 * 182.97051 * 4 3 2 6 6 C 1.47204 * 120.00251 * 2.97401 * 4 3 2 7 7 C 1.38847 * 120.89679 * 30.30692 * 6 4 3 8 8 C 1.39935 * 119.42626 * 180.02562 * 7 6 4 9 9 C 1.35019 * 121.27528 * 359.97438 * 8 7 6 10 10 N 1.36258 * 121.57402 * 0.04418 * 9 8 7 11 11 C 1.36369 * 133.87511 * 179.97438 * 10 9 8 12 12 O 1.35714 * 126.33390 * 359.96293 * 11 10 9 13 13 N 1.31098 * 107.33351 * 179.97438 * 11 10 9 14 14 N 1.28692 * 110.31135 * 0.02562 * 13 11 10 15 15 C 1.31484 * 109.67120 * 359.69455 * 14 13 11 16 16 C 1.46505 * 119.99972 * 70.35294 * 3 2 1 17 17 H 1.08990 * 110.92049 * 30.34710 * 16 3 2 18 18 C 1.55159 * 111.00012 * 266.44023 * 16 3 2 19 19 C 1.54317 * 102.94649 * 277.43304 * 18 16 3 20 20 N 1.47026 * 107.27163 * 337.80615 * 19 18 16 21 21 C 1.36939 * 125.65045 * 178.90993 * 20 19 18 22 22 H 1.07994 * 119.99564 * 180.02562 * 21 20 19 23 23 C 1.38808 * 119.99725 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00366 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99780 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47131 * 60.00330 * 25 23 21 27 27 H 1.48501 * 109.47425 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47281 * 300.00351 * 25 23 21 29 29 C 1.47424 * 108.70091 * 358.94324 * 20 19 18 30 30 H 1.08998 * 109.47258 * 300.00102 * 1 2 3 31 31 H 1.08999 * 109.46720 * 60.00203 * 1 2 3 32 32 H 1.09002 * 109.46671 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47482 * 239.99434 * 2 1 3 34 34 H 1.09005 * 109.46730 * 119.99353 * 2 1 3 35 35 H 1.08001 * 120.29026 * 0.02562 * 7 6 4 36 36 H 1.08004 * 119.36517 * 179.97438 * 8 7 6 37 37 H 1.07992 * 119.21629 * 180.02562 * 9 8 7 38 38 H 0.96705 * 113.99987 * 89.99737 * 12 11 10 39 39 H 1.09003 * 110.71664 * 159.06159 * 18 16 3 40 40 H 1.08999 * 110.71896 * 35.79532 * 18 16 3 41 41 H 1.09004 * 109.88479 * 218.39366 * 19 18 16 42 42 H 1.08997 * 109.88508 * 97.22486 * 19 18 16 43 43 H 0.96999 * 120.00297 * 180.02562 * 24 23 21 44 44 H 1.08995 * 110.36908 * 142.96682 * 29 20 19 45 45 H 1.09008 * 110.36886 * 265.17967 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6131 1.8857 -1.0992 5 8 3.0668 3.0141 -1.0815 6 6 2.7135 1.0711 -2.3211 7 6 1.7495 0.1190 -2.6246 8 6 1.8758 -0.6387 -3.7943 9 6 2.9175 -0.4618 -4.6350 10 7 3.8897 0.4588 -4.3825 11 6 5.0234 0.8401 -5.0375 12 8 5.4839 0.3336 -6.2093 13 7 5.5863 1.7863 -4.3257 14 7 4.8890 2.0267 -3.2711 15 6 3.8306 1.2467 -3.2530 16 6 1.8603 2.2140 1.1949 17 1 1.8822 1.6057 2.0990 18 6 0.5568 3.0523 1.1200 19 6 0.9739 4.2639 0.2600 20 7 2.4364 4.3824 0.3529 21 6 3.2032 5.3209 -0.2847 22 1 4.2749 5.3237 -0.1512 23 6 2.6030 6.2685 -1.1023 24 7 1.2968 6.2653 -1.2645 25 14 3.6490 7.5482 -1.9726 26 1 4.6218 6.8685 -2.8654 27 1 2.7745 8.4376 -2.7785 28 1 4.3825 8.3563 -0.9653 29 6 2.9407 3.3230 1.2456 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.9095 -0.0355 -1.9637 36 1 1.1256 -1.3793 -4.0292 37 1 2.9818 -1.0646 -5.5287 38 1 5.1560 0.7952 -6.9933 39 1 0.2472 3.3735 2.1145 40 1 -0.2373 2.4877 0.6314 41 1 0.5035 5.1697 0.6427 42 1 0.6803 4.1010 -0.7770 43 1 0.8774 6.9273 -1.8361 44 1 3.8939 2.9410 0.8802 45 1 3.0494 3.7029 2.2615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034016695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:19 Heat of formation + Delta-G solvation = 154.708775 kcal Electronic energy + Delta-G solvation = -32359.042901 eV Core-core repulsion = 28190.675932 eV Total energy + Delta-G solvation = -4168.366969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.39176 -40.09718 -38.11930 -37.70197 -36.22061 -35.54025 -33.41847 -32.05634 -31.00150 -30.15442 -29.14848 -28.78866 -27.10895 -24.89261 -24.33267 -23.43674 -23.09328 -22.64331 -21.09875 -19.91460 -19.62427 -18.40546 -18.04642 -17.30753 -16.76627 -16.54854 -16.39221 -15.71709 -15.33439 -14.84739 -14.59526 -14.33697 -14.25468 -13.88059 -13.51834 -13.26331 -12.89344 -12.61671 -12.56100 -12.46779 -12.12101 -11.94043 -11.84045 -11.67992 -11.59885 -11.48269 -11.27733 -10.74273 -10.69159 -10.67246 -10.52634 -10.27724 -9.97414 -9.94159 -9.75567 -9.53090 -9.42690 -8.69752 -8.24606 -7.98629 -7.97329 -6.36468 -5.46828 -2.59357 0.24508 1.00522 1.87180 2.59355 2.98705 3.34801 3.60491 3.62949 3.63324 3.70773 3.86559 4.06835 4.27998 4.58563 4.69479 4.76115 4.84809 4.94600 5.16972 5.28538 5.36219 5.41928 5.47037 5.59532 5.64438 5.70643 5.71859 5.78202 5.84109 5.89057 5.89919 6.02179 6.11992 6.20949 6.24269 6.51145 6.52130 6.63720 6.67687 6.86977 7.17025 7.28710 7.74531 7.78454 7.97191 8.03830 8.48255 8.62234 9.08181 9.47276 10.07189 10.71398 11.65797 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.005725 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.708933 B = 4889.990740 C = 7124.326918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 N -0.603 5.603 4 C 0.505 3.495 5 O -0.389 6.389 6 C -0.058 4.058 7 C -0.100 4.100 8 C -0.135 4.135 9 C 0.059 3.941 10 N -0.403 5.403 11 C 0.301 3.699 12 O -0.430 6.430 13 N -0.241 5.241 14 N -0.236 5.236 15 C 0.235 3.765 16 C 0.135 3.865 17 H 0.080 0.920 18 C -0.163 4.163 19 C 0.181 3.819 20 N -0.557 5.557 21 C -0.152 4.152 22 H 0.074 0.926 23 C -0.022 4.022 24 N -0.925 5.925 25 Si 0.904 3.096 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.289 1.289 29 C 0.136 3.864 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.401 0.599 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -20.751 -3.211 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.040 4.040 3 N -0.342 5.342 4 C 0.288 3.712 5 O -0.253 6.253 6 C -0.067 4.067 7 C -0.124 4.124 8 C -0.157 4.157 9 C -0.064 4.064 10 N -0.096 5.096 11 C 0.002 3.998 12 O -0.229 6.229 13 N -0.091 5.091 14 N -0.081 5.081 15 C -0.017 4.017 16 C 0.031 3.969 17 H 0.098 0.902 18 C -0.203 4.203 19 C 0.056 3.944 20 N -0.280 5.280 21 C -0.281 4.281 22 H 0.092 0.908 23 C -0.216 4.216 24 N -0.575 5.575 25 Si 0.736 3.264 26 H -0.211 1.211 27 H -0.221 1.221 28 H -0.216 1.216 29 C 0.009 3.991 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.185 0.815 36 H 0.173 0.827 37 H 0.182 0.818 38 H 0.257 0.743 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.596 -19.117 -2.770 19.490 hybrid contribution -0.867 -0.334 -1.760 1.991 sum -3.463 -19.451 -4.531 20.270 Atomic orbital electron populations 1.22355 0.96220 1.01811 1.03261 1.22074 0.94335 0.84136 1.03489 1.47429 1.61053 1.12210 1.13463 1.17766 0.83925 0.87466 0.82030 1.91565 1.38967 1.13598 1.81202 1.20542 0.91998 0.98466 0.95672 1.22370 0.99259 0.93894 0.96921 1.20742 0.98098 1.02104 0.94714 1.21500 0.89151 0.93762 1.01985 1.43984 1.17915 1.27549 1.20164 1.21765 0.86792 0.98414 0.92862 1.84985 1.68732 1.57306 1.11869 1.74717 1.22884 1.09623 1.01897 1.75061 1.01748 1.18736 1.12588 1.22714 0.98335 0.92270 0.88376 1.22195 0.97650 0.91605 0.85459 0.90191 1.23464 0.96591 0.99346 1.00854 1.21087 0.84335 0.92244 0.96744 1.44366 1.02011 1.30936 1.50672 1.18937 0.89940 1.01441 1.17801 0.90807 1.24620 0.95826 1.00224 1.00973 1.69938 1.07705 1.37253 1.42610 0.86255 0.79223 0.81150 0.79748 1.21131 1.22123 1.21574 1.21756 0.95582 0.88286 0.93491 0.91295 0.91941 0.91838 0.88828 0.91525 0.81480 0.82678 0.81791 0.74254 0.91865 0.91882 0.94212 0.94013 0.94335 0.93282 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.38 37.16 0.31 -1.25 16 2 C 0.08 0.88 5.64 -4.04 -0.02 0.85 16 3 N -0.60 -9.54 2.62 -165.00 -0.43 -9.97 16 4 C 0.50 9.99 6.90 -12.62 -0.09 9.91 16 5 O -0.39 -9.84 9.38 5.24 0.05 -9.79 16 6 C -0.06 -0.98 5.63 -102.69 -0.58 -1.56 16 7 C -0.10 -1.16 7.50 -38.72 -0.29 -1.45 16 8 C -0.13 -1.16 9.91 -40.09 -0.40 -1.56 16 9 C 0.06 0.59 10.94 -16.73 -0.18 0.40 16 10 N -0.40 -5.99 2.97 -62.52 -0.19 -6.17 16 11 C 0.30 4.73 9.41 -88.65 -0.83 3.89 16 12 O -0.43 -4.84 13.65 -18.85 -0.26 -5.10 16 13 N -0.24 -4.84 12.20 29.70 0.36 -4.48 16 14 N -0.24 -5.27 12.12 32.37 0.39 -4.88 16 15 C 0.23 4.44 7.77 -153.91 -1.20 3.24 16 16 C 0.14 2.26 3.45 -65.78 -0.23 2.03 16 17 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 18 C -0.16 -2.90 6.34 -24.90 -0.16 -3.06 16 19 C 0.18 4.44 4.60 -3.07 -0.01 4.42 16 20 N -0.56 -14.52 1.76 -170.07 -0.30 -14.82 16 21 C -0.15 -4.50 8.29 -15.06 -0.12 -4.63 16 22 H 0.07 2.21 7.83 -52.49 -0.41 1.80 16 23 C -0.02 -0.68 5.49 -17.43 -0.10 -0.77 16 24 N -0.93 -28.58 10.31 55.49 0.57 -28.01 16 25 Si 0.90 24.45 29.55 -169.99 -5.02 19.43 16 26 H -0.28 -7.91 7.11 56.52 0.40 -7.51 16 27 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 C 0.14 2.90 5.94 -2.53 -0.02 2.88 16 30 H 0.07 0.66 6.68 -51.93 -0.35 0.31 16 31 H 0.06 0.61 6.92 -51.93 -0.36 0.25 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.91 4.07 -51.93 -0.21 0.70 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.17 1.58 3.36 -52.49 -0.18 1.40 16 36 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.40 2.35 9.06 45.56 0.41 2.77 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 41 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 42 H 0.04 1.17 7.34 -51.93 -0.38 0.79 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.05 1.12 7.03 -51.93 -0.37 0.76 16 45 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -39.69 353.17 -8.06 -47.75 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.64 Total: -2.64 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: -3.91 Total: 13.36 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 0.41 Total: -68.33 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.21 Total: -14.89 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.02 Total: 19.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.69 -8.06 -47.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034016695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.456 kcal (2) G-P(sol) polarization free energy of solvation -39.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds