Wall clock time and date at job start Wed Apr 1 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46972 * 2 1 4 4 C 1.34771 * 119.99857 * 250.34406 * 3 2 1 5 5 O 1.21643 * 120.00304 * 182.97051 * 4 3 2 6 6 C 1.47204 * 120.00251 * 2.97401 * 4 3 2 7 7 C 1.38847 * 120.89679 * 30.30692 * 6 4 3 8 8 C 1.39935 * 119.42626 * 180.02562 * 7 6 4 9 9 C 1.35019 * 121.27528 * 359.97438 * 8 7 6 10 10 N 1.36258 * 121.57402 * 0.04418 * 9 8 7 11 11 C 1.36369 * 133.87511 * 179.97438 * 10 9 8 12 12 O 1.35714 * 126.33390 * 359.96293 * 11 10 9 13 13 N 1.31098 * 107.33351 * 179.97438 * 11 10 9 14 14 N 1.28692 * 110.31135 * 0.02562 * 13 11 10 15 15 C 1.31484 * 109.67120 * 359.69455 * 14 13 11 16 16 C 1.46505 * 119.99972 * 70.35294 * 3 2 1 17 17 H 1.08990 * 110.92049 * 30.34710 * 16 3 2 18 18 C 1.55159 * 111.00012 * 266.44023 * 16 3 2 19 19 C 1.54317 * 102.94649 * 277.43304 * 18 16 3 20 20 N 1.47026 * 107.27163 * 337.80615 * 19 18 16 21 21 C 1.36939 * 125.65045 * 178.90993 * 20 19 18 22 22 H 1.07994 * 119.99564 * 180.02562 * 21 20 19 23 23 C 1.38808 * 119.99725 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00366 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99780 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47131 * 60.00330 * 25 23 21 27 27 H 1.48501 * 109.47425 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47281 * 300.00351 * 25 23 21 29 29 C 1.47424 * 108.70091 * 358.94324 * 20 19 18 30 30 H 1.08998 * 109.47258 * 300.00102 * 1 2 3 31 31 H 1.08999 * 109.46720 * 60.00203 * 1 2 3 32 32 H 1.09002 * 109.46671 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47482 * 239.99434 * 2 1 3 34 34 H 1.09005 * 109.46730 * 119.99353 * 2 1 3 35 35 H 1.08001 * 120.29026 * 0.02562 * 7 6 4 36 36 H 1.08004 * 119.36517 * 179.97438 * 8 7 6 37 37 H 1.07992 * 119.21629 * 180.02562 * 9 8 7 38 38 H 0.96705 * 113.99987 * 89.99737 * 12 11 10 39 39 H 1.09003 * 110.71664 * 159.06159 * 18 16 3 40 40 H 1.08999 * 110.71896 * 35.79532 * 18 16 3 41 41 H 1.09004 * 109.88479 * 218.39366 * 19 18 16 42 42 H 1.08997 * 109.88508 * 97.22486 * 19 18 16 43 43 H 0.96999 * 120.00297 * 180.02562 * 24 23 21 44 44 H 1.08995 * 110.36908 * 142.96682 * 29 20 19 45 45 H 1.09008 * 110.36886 * 265.17967 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6131 1.8857 -1.0992 5 8 3.0668 3.0141 -1.0815 6 6 2.7135 1.0711 -2.3211 7 6 1.7495 0.1190 -2.6246 8 6 1.8758 -0.6387 -3.7943 9 6 2.9175 -0.4618 -4.6350 10 7 3.8897 0.4588 -4.3825 11 6 5.0234 0.8401 -5.0375 12 8 5.4839 0.3336 -6.2093 13 7 5.5863 1.7863 -4.3257 14 7 4.8890 2.0267 -3.2711 15 6 3.8306 1.2467 -3.2530 16 6 1.8603 2.2140 1.1949 17 1 1.8822 1.6057 2.0990 18 6 0.5568 3.0523 1.1200 19 6 0.9739 4.2639 0.2600 20 7 2.4364 4.3824 0.3529 21 6 3.2032 5.3209 -0.2847 22 1 4.2749 5.3237 -0.1512 23 6 2.6030 6.2685 -1.1023 24 7 1.2968 6.2653 -1.2645 25 14 3.6490 7.5482 -1.9726 26 1 4.6218 6.8685 -2.8654 27 1 2.7745 8.4376 -2.7785 28 1 4.3825 8.3563 -0.9653 29 6 2.9407 3.3230 1.2456 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.9095 -0.0355 -1.9637 36 1 1.1256 -1.3793 -4.0292 37 1 2.9818 -1.0646 -5.5287 38 1 5.1560 0.7952 -6.9933 39 1 0.2472 3.3735 2.1145 40 1 -0.2373 2.4877 0.6314 41 1 0.5035 5.1697 0.6427 42 1 0.6803 4.1010 -0.7770 43 1 0.8774 6.9273 -1.8361 44 1 3.8939 2.9410 0.8802 45 1 3.0494 3.7029 2.2615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034016695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:18 Heat of formation + Delta-G solvation = 121.077163 kcal Electronic energy + Delta-G solvation = -32360.501277 eV Core-core repulsion = 28190.675932 eV Total energy + Delta-G solvation = -4169.825345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -44.63178 -41.46289 -39.29957 -38.75102 -37.82032 -36.84125 -34.80737 -33.78227 -32.14123 -31.38397 -30.76093 -30.15754 -28.70860 -26.48514 -25.84382 -24.67058 -24.22173 -23.66881 -22.47154 -21.74958 -20.80975 -19.52646 -19.34308 -18.67189 -18.41730 -17.86743 -17.59665 -16.82441 -16.60976 -16.43083 -16.06297 -15.79323 -15.74028 -15.33525 -14.78223 -14.53786 -13.97859 -13.80250 -13.71281 -13.67465 -13.59883 -13.49181 -13.32420 -12.98186 -12.83879 -12.83312 -12.70069 -12.50973 -12.33491 -12.11485 -12.02530 -11.85153 -11.67510 -11.52955 -11.50433 -11.24948 -10.67804 -10.52940 -10.14019 -9.32048 -9.14353 -8.38830 -7.65934 -4.86520 -0.73558 -0.09036 0.72951 1.35070 1.41348 1.43243 1.47617 1.80788 2.12998 2.52211 2.58829 2.60560 3.02785 3.18592 3.52341 3.63537 3.71577 3.78724 3.86086 4.05576 4.11663 4.19893 4.37653 4.41562 4.46803 4.48358 4.66429 4.71821 4.73698 4.78426 4.87881 4.92904 5.01587 5.07656 5.10882 5.16724 5.18900 5.28254 5.54904 5.57957 5.60153 5.80663 5.92290 5.98031 6.27242 6.40107 6.69090 7.33116 7.33814 7.71484 8.03036 8.64592 9.46100 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.005725 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.708933 B = 4889.990740 C = 7124.326918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 N -0.600 5.600 4 C 0.505 3.495 5 O -0.464 6.464 6 C -0.122 4.122 7 C -0.037 4.037 8 C -0.131 4.131 9 C 0.078 3.922 10 N -0.405 5.405 11 C 0.322 3.678 12 O -0.419 6.419 13 N -0.294 5.294 14 N -0.316 5.316 15 C 0.224 3.776 16 C 0.149 3.851 17 H 0.133 0.867 18 C -0.142 4.142 19 C 0.196 3.804 20 N -0.579 5.579 21 C -0.152 4.152 22 H 0.050 0.950 23 C -0.078 4.078 24 N -0.959 5.959 25 Si 0.950 3.050 26 H -0.304 1.304 27 H -0.293 1.293 28 H -0.277 1.277 29 C 0.132 3.868 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.197 0.803 36 H 0.223 0.777 37 H 0.220 0.780 38 H 0.428 0.572 39 H 0.086 0.914 40 H 0.087 0.913 41 H -0.005 1.005 42 H -0.008 1.008 43 H 0.234 0.766 44 H 0.021 0.979 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -27.500 -4.132 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.045 4.045 3 N -0.336 5.336 4 C 0.289 3.711 5 O -0.333 6.333 6 C -0.130 4.130 7 C -0.061 4.061 8 C -0.152 4.152 9 C -0.042 4.042 10 N -0.097 5.097 11 C 0.020 3.980 12 O -0.221 6.221 13 N -0.143 5.143 14 N -0.161 5.161 15 C -0.030 4.030 16 C 0.045 3.955 17 H 0.151 0.849 18 C -0.181 4.181 19 C 0.071 3.929 20 N -0.302 5.302 21 C -0.283 4.283 22 H 0.068 0.932 23 C -0.269 4.269 24 N -0.613 5.613 25 Si 0.782 3.218 26 H -0.233 1.233 27 H -0.219 1.219 28 H -0.204 1.204 29 C 0.007 3.993 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.214 0.786 36 H 0.240 0.760 37 H 0.236 0.764 38 H 0.289 0.711 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.014 0.986 42 H 0.011 0.989 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.298 -25.994 -3.715 26.787 hybrid contribution -0.001 1.081 -1.794 2.095 sum -5.299 -24.913 -5.510 26.059 Atomic orbital electron populations 1.22350 0.94084 1.04264 1.02674 1.22470 0.95857 0.80838 1.05289 1.47633 1.59963 1.14124 1.11899 1.18405 0.82075 0.86908 0.83674 1.91547 1.42740 1.16863 1.82180 1.20441 0.94455 1.01986 0.96070 1.22991 0.96702 0.89315 0.97083 1.21547 0.98826 1.02285 0.92492 1.22802 0.87005 0.91057 1.03362 1.44171 1.18629 1.28020 1.18900 1.21689 0.86240 0.96632 0.93389 1.84971 1.68678 1.57094 1.11356 1.74502 1.24675 1.12339 1.02751 1.74909 1.04485 1.22037 1.14649 1.22953 0.98064 0.92237 0.89726 1.22190 0.94420 0.91111 0.87799 0.84944 1.23308 0.97608 0.96482 1.00734 1.20720 0.83566 0.93507 0.95095 1.44339 1.02429 1.31885 1.51573 1.18850 0.89228 1.02198 1.17996 0.93205 1.25108 0.96775 1.02331 1.02636 1.70132 1.08323 1.38232 1.44624 0.85522 0.77717 0.79722 0.78820 1.23282 1.21873 1.20386 1.21841 0.96072 0.89003 0.92427 0.91630 0.92925 0.87784 0.87933 0.88832 0.78608 0.76009 0.76392 0.71100 0.89542 0.89416 0.98644 0.98933 0.95702 0.96082 0.95107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.38 71.98 0.60 -1.37 16 2 C 0.08 1.21 5.64 86.38 0.49 1.70 16 3 N -0.60 -17.84 2.62 -794.19 -2.08 -19.92 16 4 C 0.50 20.47 6.90 86.60 0.60 21.06 16 5 O -0.46 -25.42 9.38 -4.17 -0.04 -25.46 16 6 C -0.12 -4.02 5.63 -18.61 -0.10 -4.12 16 7 C -0.04 -0.67 7.50 22.83 0.17 -0.50 16 8 C -0.13 -1.23 9.91 21.94 0.22 -1.01 16 9 C 0.08 1.05 10.94 83.26 0.91 1.96 16 10 N -0.40 -10.99 2.97 -462.37 -1.37 -12.36 16 11 C 0.32 9.79 9.41 179.66 1.69 11.48 16 12 O -0.42 -8.18 13.65 -90.35 -1.23 -9.42 16 13 N -0.29 -12.48 12.20 -173.36 -2.11 -14.60 16 14 N -0.32 -15.22 12.12 -51.51 -0.62 -15.85 16 15 C 0.22 8.57 7.77 135.67 1.05 9.63 16 16 C 0.15 4.73 3.45 46.38 0.16 4.89 16 17 H 0.13 2.93 8.11 -2.39 -0.02 2.91 16 18 C -0.14 -4.90 6.34 31.78 0.20 -4.70 16 19 C 0.20 10.27 4.60 86.73 0.40 10.67 16 20 N -0.58 -32.59 1.76 -691.99 -1.22 -33.81 16 21 C -0.15 -9.87 8.29 84.03 0.70 -9.17 16 22 H 0.05 3.33 7.83 -2.91 -0.02 3.31 16 23 C -0.08 -5.18 5.49 84.86 0.47 -4.71 16 24 N -0.96 -64.61 10.31 21.65 0.22 -64.38 16 25 Si 0.95 54.81 29.55 68.60 2.03 56.84 16 26 H -0.30 -18.24 7.11 99.48 0.71 -17.54 16 27 H -0.29 -16.50 7.11 99.48 0.71 -15.79 16 28 H -0.28 -15.19 7.11 99.48 0.71 -14.48 16 29 C 0.13 5.92 5.94 86.86 0.52 6.43 16 30 H 0.06 0.86 6.68 -2.39 -0.02 0.84 16 31 H 0.05 0.72 6.92 -2.39 -0.02 0.71 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 1.38 4.07 -2.39 -0.01 1.37 16 34 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.20 2.40 3.36 -2.91 -0.01 2.39 16 36 H 0.22 -0.61 8.06 -2.91 -0.02 -0.63 16 37 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.43 3.55 9.06 -74.05 -0.67 2.88 16 39 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.09 2.59 6.20 -2.39 -0.01 2.57 16 41 H 0.00 -0.27 7.51 -2.38 -0.02 -0.29 16 42 H -0.01 -0.46 7.34 -2.39 -0.02 -0.48 16 43 H 0.23 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.02 1.04 7.03 -2.39 -0.02 1.02 16 45 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -109.21 353.17 2.02 -107.19 By element: Atomic # 1 Polarization: -10.87 SS G_CDS: 0.39 Total: -10.48 kcal Atomic # 6 Polarization: 34.18 SS G_CDS: 8.07 Total: 42.25 kcal Atomic # 7 Polarization: -153.73 SS G_CDS: -7.19 Total: -160.92 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.27 Total: -34.87 kcal Atomic # 14 Polarization: 54.81 SS G_CDS: 2.03 Total: 56.84 kcal Total: -109.21 2.02 -107.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034016695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.263 kcal (2) G-P(sol) polarization free energy of solvation -109.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds