Wall clock time and date at job start Wed Apr 1 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36252 * 126.29458 * 2 1 4 4 N 1.30136 * 110.04790 * 180.02562 * 3 2 1 5 5 C 1.35702 * 109.49883 * 359.97438 * 4 3 2 6 6 C 1.39478 * 134.42837 * 180.02562 * 5 4 3 7 7 N 1.31771 * 120.62827 * 179.97438 * 6 5 4 8 8 C 1.31946 * 122.60384 * 0.02894 * 7 6 5 9 9 C 1.39373 * 121.01399 * 359.97438 * 8 7 6 10 10 C 1.47537 * 120.75260 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00156 * 217.92261 * 10 9 8 12 12 N 1.34777 * 119.99909 * 37.92284 * 10 9 8 13 13 C 1.46503 * 120.00039 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46993 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.51384 * 60.09850 * 14 13 12 16 16 C 1.53705 * 109.48351 * 180.36286 * 14 13 12 17 17 N 1.47158 * 108.16331 * 172.39746 * 16 14 13 18 18 C 1.36940 * 120.98135 * 129.43113 * 17 16 14 19 19 H 1.07995 * 119.99691 * 329.25844 * 18 17 16 20 20 C 1.38804 * 119.99877 * 149.25870 * 18 17 16 21 21 N 1.31617 * 120.00005 * 346.90853 * 20 18 17 22 22 Si 1.86798 * 120.00258 * 166.63503 * 20 18 17 23 23 H 1.48501 * 109.47186 * 89.99809 * 22 20 18 24 24 H 1.48501 * 109.47702 * 209.99920 * 22 20 18 25 25 H 1.48505 * 109.46891 * 330.00078 * 22 20 18 26 26 C 1.47146 * 118.03258 * 309.16162 * 17 16 14 27 27 C 1.53295 * 108.38952 * 50.78287 * 26 17 16 28 28 O 1.42958 * 109.22207 * 307.69886 * 27 26 17 29 29 C 1.36923 * 126.29656 * 180.35341 * 2 1 3 30 30 H 1.09000 * 109.47200 * 96.17755 * 1 2 3 31 31 H 1.09003 * 109.46851 * 216.17611 * 1 2 3 32 32 H 1.09006 * 109.46942 * 336.17375 * 1 2 3 33 33 H 1.07999 * 124.97885 * 0.02562 * 3 2 1 34 34 H 1.07993 * 119.68949 * 359.96855 * 6 5 4 35 35 H 1.07995 * 119.49305 * 179.97438 * 8 7 6 36 36 H 0.97000 * 119.99784 * 359.97438 * 12 10 9 37 37 H 1.08994 * 109.46790 * 60.00029 * 13 12 10 38 38 H 1.09002 * 109.46920 * 299.99893 * 13 12 10 39 39 H 1.09005 * 109.84045 * 52.71716 * 16 14 13 40 40 H 1.08996 * 109.74998 * 292.02595 * 16 14 13 41 41 H 0.97005 * 120.00302 * 179.97438 * 21 20 18 42 42 H 1.09008 * 109.68243 * 170.50817 * 26 17 16 43 43 H 1.08999 * 109.68249 * 291.01995 * 26 17 16 44 44 H 1.09000 * 109.51403 * 67.61949 * 27 26 17 45 45 H 1.09003 * 109.51428 * 187.72242 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2716 1.0982 0.0000 4 7 3.5210 0.7341 -0.0005 5 6 3.5980 -0.6207 -0.0004 6 6 4.6478 -1.5390 -0.0003 7 7 4.4066 -2.8345 0.0004 8 6 3.1837 -3.3300 0.0005 9 6 2.0696 -2.4925 0.0004 10 6 0.7047 -3.0528 -0.0001 11 8 -0.1730 -2.5151 -0.6474 12 7 0.4308 -4.1606 0.7170 13 6 -0.9246 -4.7166 0.7170 14 6 -0.9643 -5.9636 1.6027 15 1 -0.6834 -5.6958 2.6213 16 6 -2.3841 -6.5524 1.5957 17 7 -2.3488 -7.8434 2.3011 18 6 -3.2417 -8.1254 3.3003 19 1 -3.6291 -7.3293 3.9187 20 6 -3.6489 -9.4344 3.5182 21 7 -3.3895 -10.3622 2.6214 22 14 -4.5582 -9.8808 5.0876 23 1 -6.0195 -9.7241 4.8747 24 1 -4.2590 -11.2896 5.4496 25 1 -4.1191 -8.9834 6.1864 26 6 -1.3295 -8.8247 1.8969 27 6 0.0356 -8.1272 1.8856 28 8 -0.0497 -6.9386 1.0959 29 6 2.2756 -1.1035 -0.0068 30 1 -0.3633 -0.1106 -1.0217 31 1 -0.3633 -0.8296 0.6066 32 1 -0.3633 0.9401 0.4152 33 1 1.9249 2.1210 0.0004 34 1 5.6681 -1.1851 -0.0009 35 1 3.0439 -4.4008 0.0007 36 1 1.1311 -4.5898 1.2331 37 1 -1.2071 -4.9853 -0.3009 38 1 -1.6221 -3.9736 1.1036 39 1 -2.7166 -6.7042 0.5687 40 1 -3.0669 -5.8736 2.1065 41 1 -3.6737 -11.2770 2.7738 42 1 -1.3135 -9.6513 2.6074 43 1 -1.5579 -9.2019 0.9001 44 1 0.3201 -7.8672 2.9052 45 1 0.7827 -8.7962 1.4585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035400790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:37 Heat of formation + Delta-G solvation = 38.262351 kcal Electronic energy + Delta-G solvation = -29867.110645 eV Core-core repulsion = 25693.694180 eV Total energy + Delta-G solvation = -4173.416465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.81682 -39.94633 -38.76662 -38.40573 -35.11211 -34.52843 -34.34969 -32.31889 -31.48422 -30.76429 -30.17836 -27.77729 -27.41170 -25.85137 -24.57774 -23.30510 -23.24608 -22.37271 -21.62307 -20.49702 -19.69021 -18.19221 -17.97708 -17.49957 -16.94462 -16.49843 -16.16230 -15.94159 -15.69105 -15.21097 -15.06795 -14.80827 -14.48439 -14.40224 -14.10858 -13.96902 -13.81200 -13.34540 -13.22212 -13.00135 -12.89823 -12.74439 -12.72643 -12.20248 -11.64358 -11.16634 -10.94795 -10.91602 -10.85441 -10.76019 -10.55244 -10.48255 -10.34635 -10.10619 -9.79610 -9.67241 -9.31820 -9.16729 -9.12144 -8.67267 -8.62012 -6.76877 -5.91136 -3.40075 0.11830 1.03337 2.11597 2.17806 2.65645 2.97870 3.29001 3.36185 3.37599 3.51951 3.72442 3.98263 4.09726 4.17011 4.35869 4.36349 4.54169 4.61572 4.75291 4.95460 5.01061 5.07679 5.27331 5.29413 5.34427 5.38024 5.43143 5.67858 5.70456 5.73141 5.89532 5.93491 6.07288 6.08432 6.18906 6.29715 6.34464 6.41665 6.58043 6.67538 7.01973 7.24957 7.33037 7.45115 7.61432 7.64610 7.76212 7.97738 8.29226 9.05023 9.66177 10.25072 11.16856 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.002209 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.381021 B =12673.716997 C =13347.230579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.477 5.477 3 C 0.261 3.739 4 N -0.478 5.478 5 C -0.017 4.017 6 C 0.195 3.805 7 N -0.487 5.487 8 C 0.137 3.863 9 C -0.172 4.172 10 C 0.561 3.439 11 O -0.542 6.542 12 N -0.707 5.707 13 C 0.130 3.870 14 C 0.064 3.936 15 H 0.059 0.941 16 C 0.122 3.878 17 N -0.593 5.593 18 C -0.260 4.260 19 H 0.066 0.934 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.906 3.094 23 H -0.285 1.285 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.141 3.859 27 C 0.040 3.960 28 O -0.390 6.390 29 C 0.120 3.880 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.221 0.779 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.406 0.594 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.256 0.744 42 H 0.090 0.910 43 H 0.030 0.970 44 H 0.041 0.959 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 19.707 -4.138 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.164 5.164 3 C -0.025 4.025 4 N -0.197 5.197 5 C -0.138 4.138 6 C 0.029 3.971 7 N -0.197 5.197 8 C -0.014 4.014 9 C -0.181 4.181 10 C 0.347 3.653 11 O -0.421 6.421 12 N -0.357 5.357 13 C 0.007 3.993 14 C 0.004 3.996 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.317 5.317 18 C -0.389 4.389 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.735 3.265 23 H -0.212 1.212 24 H -0.214 1.214 25 H -0.204 1.204 26 C 0.016 3.984 27 C -0.038 4.038 28 O -0.309 6.309 29 C 0.000 4.000 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.237 0.763 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.293 19.790 -4.727 23.772 hybrid contribution -1.925 -0.556 1.183 2.327 sum 10.368 19.233 -3.544 22.135 Atomic orbital electron populations 1.22278 0.74246 1.04135 1.05248 1.45258 1.08488 1.04907 1.57779 1.25613 0.84956 0.93594 0.98344 1.70483 1.18324 1.09901 1.21013 1.20154 0.92789 0.91608 1.09265 1.22332 0.98238 0.86254 0.90241 1.67726 1.23251 1.13803 1.14894 1.22858 0.85832 1.00042 0.92704 1.19899 0.95674 0.90277 1.12231 1.17936 0.87104 0.80643 0.79602 1.90773 1.47741 1.60648 1.42969 1.45915 1.13439 1.27407 1.48941 1.21504 0.82569 0.93642 1.01610 1.22904 0.93469 0.87504 0.95753 0.92297 1.21527 0.92475 0.89832 0.96663 1.44024 1.34930 1.12597 1.40127 1.19135 1.19873 0.92995 1.06916 0.91584 1.25178 0.98682 0.97275 0.98142 1.69997 1.49413 1.01884 1.33207 0.86253 0.79682 0.77586 0.82950 1.21199 1.21427 1.20386 1.21399 0.84651 0.92470 0.99906 1.23337 1.00237 0.86194 0.94032 1.87768 1.62398 1.28234 1.52505 1.18657 0.91628 0.88584 1.01114 0.89435 0.89024 0.89662 0.76288 0.81297 0.81221 0.75854 0.90330 0.90062 0.95184 0.91817 0.93396 0.89168 0.95238 0.94057 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 9.40 59.85 0.56 1.20 16 2 N -0.48 -4.59 3.18 -122.86 -0.39 -4.98 16 3 C 0.26 2.10 12.50 -89.56 -1.12 0.98 16 4 N -0.48 -5.15 11.28 -12.01 -0.14 -5.29 16 5 C -0.02 -0.20 7.27 -84.73 -0.62 -0.81 16 6 C 0.20 2.02 11.25 -17.12 -0.19 1.83 16 7 N -0.49 -5.43 10.30 -12.65 -0.13 -5.56 16 8 C 0.14 1.48 10.51 -17.08 -0.18 1.30 16 9 C -0.17 -2.03 5.78 -104.86 -0.61 -2.64 16 10 C 0.56 7.14 6.83 -12.47 -0.09 7.05 16 11 O -0.54 -7.95 13.35 5.29 0.07 -7.87 16 12 N -0.71 -8.49 5.37 -61.35 -0.33 -8.82 16 13 C 0.13 1.76 5.37 -4.04 -0.02 1.74 16 14 C 0.06 1.03 2.88 -26.36 -0.08 0.95 16 15 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.12 2.42 6.05 -3.32 -0.02 2.40 16 17 N -0.59 -14.31 3.03 -171.58 -0.52 -14.83 16 18 C -0.26 -6.86 9.62 -15.06 -0.14 -7.01 16 19 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 20 C 0.01 0.18 5.01 -17.43 -0.09 0.09 16 21 N -0.90 -25.41 11.22 55.49 0.62 -24.79 16 22 Si 0.91 20.95 29.57 -169.99 -5.03 15.92 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.14 3.24 5.39 -3.54 -0.02 3.22 16 27 C 0.04 0.72 6.98 37.31 0.26 0.98 16 28 O -0.39 -6.78 10.13 -35.23 -0.36 -7.14 16 29 C 0.12 1.42 6.77 -83.81 -0.57 0.86 16 30 H 0.09 0.75 7.79 -51.93 -0.40 0.34 16 31 H 0.09 0.89 6.16 -51.93 -0.32 0.57 16 32 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.22 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.17 1.51 7.75 -52.49 -0.41 1.11 16 36 H 0.41 4.37 7.69 -40.82 -0.31 4.06 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.09 2.28 6.35 -51.92 -0.33 1.95 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -33.23 371.50 -9.47 -42.70 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.96 Total: 2.92 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -2.91 Total: 12.15 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.88 Total: -64.27 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.29 Total: -15.01 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.23 -9.47 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035400790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.963 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds