Wall clock time and date at job start Wed Apr 1 2020 03:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36252 * 126.29458 * 2 1 4 4 N 1.30136 * 110.04790 * 180.02562 * 3 2 1 5 5 C 1.35702 * 109.49883 * 359.97438 * 4 3 2 6 6 C 1.39478 * 134.42837 * 180.02562 * 5 4 3 7 7 N 1.31771 * 120.62827 * 179.97438 * 6 5 4 8 8 C 1.31946 * 122.60384 * 0.02894 * 7 6 5 9 9 C 1.39373 * 121.01399 * 359.97438 * 8 7 6 10 10 C 1.47537 * 120.75260 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00156 * 217.92261 * 10 9 8 12 12 N 1.34777 * 119.99909 * 37.92284 * 10 9 8 13 13 C 1.46503 * 120.00039 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46993 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.51384 * 60.09850 * 14 13 12 16 16 C 1.53705 * 109.48351 * 180.36286 * 14 13 12 17 17 N 1.47158 * 108.16331 * 172.39746 * 16 14 13 18 18 C 1.36940 * 120.98135 * 129.43113 * 17 16 14 19 19 H 1.07995 * 119.99691 * 329.25844 * 18 17 16 20 20 C 1.38804 * 119.99877 * 149.25870 * 18 17 16 21 21 N 1.31617 * 120.00005 * 346.90853 * 20 18 17 22 22 Si 1.86798 * 120.00258 * 166.63503 * 20 18 17 23 23 H 1.48501 * 109.47186 * 89.99809 * 22 20 18 24 24 H 1.48501 * 109.47702 * 209.99920 * 22 20 18 25 25 H 1.48505 * 109.46891 * 330.00078 * 22 20 18 26 26 C 1.47146 * 118.03258 * 309.16162 * 17 16 14 27 27 C 1.53295 * 108.38952 * 50.78287 * 26 17 16 28 28 O 1.42958 * 109.22207 * 307.69886 * 27 26 17 29 29 C 1.36923 * 126.29656 * 180.35341 * 2 1 3 30 30 H 1.09000 * 109.47200 * 96.17755 * 1 2 3 31 31 H 1.09003 * 109.46851 * 216.17611 * 1 2 3 32 32 H 1.09006 * 109.46942 * 336.17375 * 1 2 3 33 33 H 1.07999 * 124.97885 * 0.02562 * 3 2 1 34 34 H 1.07993 * 119.68949 * 359.96855 * 6 5 4 35 35 H 1.07995 * 119.49305 * 179.97438 * 8 7 6 36 36 H 0.97000 * 119.99784 * 359.97438 * 12 10 9 37 37 H 1.08994 * 109.46790 * 60.00029 * 13 12 10 38 38 H 1.09002 * 109.46920 * 299.99893 * 13 12 10 39 39 H 1.09005 * 109.84045 * 52.71716 * 16 14 13 40 40 H 1.08996 * 109.74998 * 292.02595 * 16 14 13 41 41 H 0.97005 * 120.00302 * 179.97438 * 21 20 18 42 42 H 1.09008 * 109.68243 * 170.50817 * 26 17 16 43 43 H 1.08999 * 109.68249 * 291.01995 * 26 17 16 44 44 H 1.09000 * 109.51403 * 67.61949 * 27 26 17 45 45 H 1.09003 * 109.51428 * 187.72242 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2716 1.0982 0.0000 4 7 3.5210 0.7341 -0.0005 5 6 3.5980 -0.6207 -0.0004 6 6 4.6478 -1.5390 -0.0003 7 7 4.4066 -2.8345 0.0004 8 6 3.1837 -3.3300 0.0005 9 6 2.0696 -2.4925 0.0004 10 6 0.7047 -3.0528 -0.0001 11 8 -0.1730 -2.5151 -0.6474 12 7 0.4308 -4.1606 0.7170 13 6 -0.9246 -4.7166 0.7170 14 6 -0.9643 -5.9636 1.6027 15 1 -0.6834 -5.6958 2.6213 16 6 -2.3841 -6.5524 1.5957 17 7 -2.3488 -7.8434 2.3011 18 6 -3.2417 -8.1254 3.3003 19 1 -3.6291 -7.3293 3.9187 20 6 -3.6489 -9.4344 3.5182 21 7 -3.3895 -10.3622 2.6214 22 14 -4.5582 -9.8808 5.0876 23 1 -6.0195 -9.7241 4.8747 24 1 -4.2590 -11.2896 5.4496 25 1 -4.1191 -8.9834 6.1864 26 6 -1.3295 -8.8247 1.8969 27 6 0.0356 -8.1272 1.8856 28 8 -0.0497 -6.9386 1.0959 29 6 2.2756 -1.1035 -0.0068 30 1 -0.3633 -0.1106 -1.0217 31 1 -0.3633 -0.8296 0.6066 32 1 -0.3633 0.9401 0.4152 33 1 1.9249 2.1210 0.0004 34 1 5.6681 -1.1851 -0.0009 35 1 3.0439 -4.4008 0.0007 36 1 1.1311 -4.5898 1.2331 37 1 -1.2071 -4.9853 -0.3009 38 1 -1.6221 -3.9736 1.1036 39 1 -2.7166 -6.7042 0.5687 40 1 -3.0669 -5.8736 2.1065 41 1 -3.6737 -11.2770 2.7738 42 1 -1.3135 -9.6513 2.6074 43 1 -1.5579 -9.2019 0.9001 44 1 0.3201 -7.8672 2.9052 45 1 0.7827 -8.7962 1.4585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035400790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:36 Heat of formation + Delta-G solvation = 15.294024 kcal Electronic energy + Delta-G solvation = -29868.106626 eV Core-core repulsion = 25693.694180 eV Total energy + Delta-G solvation = -4174.412446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.54832 -40.97217 -40.01333 -39.41551 -36.53975 -35.84072 -35.24240 -33.48145 -33.03918 -32.10480 -31.03771 -29.24739 -28.24477 -27.27162 -25.57369 -24.92267 -24.08321 -23.59325 -22.66147 -21.68709 -21.02780 -19.07452 -18.87074 -18.67325 -18.31539 -17.59608 -17.13702 -17.09894 -16.83707 -16.53784 -16.23038 -15.98662 -15.60147 -15.53804 -15.44438 -15.02234 -14.91872 -14.71663 -14.60097 -14.40451 -13.93396 -13.65663 -13.47805 -13.21828 -13.07006 -12.98835 -12.71324 -12.51905 -12.20094 -12.08575 -11.92798 -11.75713 -11.67789 -11.37315 -11.29447 -10.78223 -10.63128 -10.54400 -10.21935 -10.05286 -9.45313 -8.70706 -7.92398 -5.44886 -0.66385 0.22610 1.34091 1.45772 1.47005 1.52213 1.56456 1.79254 1.97824 2.46579 2.70608 2.77291 3.03552 3.24081 3.26171 3.41494 3.48828 3.67292 3.77456 3.93463 3.96216 4.05020 4.08094 4.24298 4.33934 4.37576 4.47738 4.51740 4.57089 4.61569 4.71906 4.73637 4.77879 4.90615 4.96774 5.06051 5.16569 5.22819 5.26347 5.33762 5.56002 5.60087 5.96110 6.25712 6.32912 6.37402 6.53897 6.83025 7.00820 7.06096 7.72731 8.28128 9.13265 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.002209 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.381021 B =12673.716997 C =13347.230579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.481 5.481 3 C 0.276 3.724 4 N -0.506 5.506 5 C -0.032 4.032 6 C 0.194 3.806 7 N -0.500 5.500 8 C 0.138 3.862 9 C -0.185 4.185 10 C 0.566 3.434 11 O -0.564 6.564 12 N -0.700 5.700 13 C 0.143 3.857 14 C 0.078 3.922 15 H 0.069 0.931 16 C 0.117 3.883 17 N -0.613 5.613 18 C -0.268 4.268 19 H 0.071 0.929 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.971 3.029 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.267 1.267 26 C 0.145 3.855 27 C 0.055 3.945 28 O -0.388 6.388 29 C 0.098 3.902 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.268 0.732 34 H 0.192 0.808 35 H 0.185 0.815 36 H 0.414 0.586 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.252 0.748 42 H 0.062 0.938 43 H -0.001 1.001 44 H 0.051 0.949 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.478 22.009 -3.362 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.168 5.168 3 C -0.009 4.009 4 N -0.225 5.225 5 C -0.152 4.152 6 C 0.029 3.971 7 N -0.210 5.210 8 C -0.014 4.014 9 C -0.193 4.193 10 C 0.353 3.647 11 O -0.444 6.444 12 N -0.350 5.350 13 C 0.019 3.981 14 C 0.018 3.982 15 H 0.087 0.913 16 C -0.009 4.009 17 N -0.337 5.337 18 C -0.398 4.398 19 H 0.089 0.911 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.799 3.201 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.192 1.192 26 C 0.019 3.981 27 C -0.023 4.023 28 O -0.307 6.307 29 C -0.022 4.022 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.284 0.716 34 H 0.209 0.791 35 H 0.202 0.798 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.036 0.964 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.017 0.983 44 H 0.069 0.931 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.083 22.124 -3.950 26.005 hybrid contribution -2.183 -1.166 0.885 2.628 sum 10.900 20.958 -3.065 23.821 Atomic orbital electron populations 1.22322 0.73315 1.05493 1.04489 1.45505 1.09116 1.04726 1.57500 1.26604 0.84025 0.94884 0.95432 1.70491 1.19891 1.09427 1.22676 1.20407 0.92964 0.92273 1.09597 1.22732 0.99220 0.85990 0.89179 1.67785 1.23313 1.14271 1.15596 1.23096 0.85595 1.00669 0.92005 1.19838 0.95153 0.90653 1.13704 1.18037 0.87308 0.80327 0.79040 1.90762 1.48516 1.61268 1.43900 1.45762 1.12975 1.27298 1.49001 1.21274 0.83744 0.92746 1.00350 1.22752 0.90752 0.87759 0.96942 0.91347 1.21686 0.95260 0.88410 0.95537 1.44306 1.35114 1.13992 1.40321 1.19498 1.19667 0.93226 1.07415 0.91123 1.25950 1.00024 0.97338 1.01012 1.70159 1.50989 1.01900 1.35020 0.85231 0.78251 0.76989 0.79670 1.21144 1.21852 1.19196 1.21261 0.87267 0.92336 0.97193 1.23151 0.97602 0.86432 0.95111 1.87788 1.62312 1.28003 1.52603 1.18941 0.92476 0.89187 1.01634 0.90494 0.91068 0.85594 0.71605 0.79073 0.79800 0.74942 0.91473 0.88741 0.96407 0.90905 0.93918 0.91976 0.98288 0.93072 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 9.40 127.77 1.20 2.36 16 2 N -0.48 -8.37 3.18 -542.62 -1.73 -10.10 16 3 C 0.28 3.69 12.50 179.98 2.25 5.94 16 4 N -0.51 -9.99 11.28 -191.90 -2.16 -12.15 16 5 C -0.03 -0.69 7.27 39.46 0.29 -0.41 16 6 C 0.19 3.81 11.25 85.00 0.96 4.77 16 7 N -0.50 -10.64 10.30 -193.92 -2.00 -12.64 16 8 C 0.14 2.84 10.51 84.95 0.89 3.73 16 9 C -0.18 -4.21 5.78 -20.02 -0.12 -4.32 16 10 C 0.57 13.87 6.83 86.70 0.59 14.47 16 11 O -0.56 -16.18 13.35 -4.00 -0.05 -16.24 16 12 N -0.70 -15.78 5.37 -466.26 -2.50 -18.29 16 13 C 0.14 3.66 5.37 86.38 0.46 4.13 16 14 C 0.08 2.39 2.88 30.83 0.09 2.48 16 15 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.12 4.61 6.05 86.49 0.52 5.13 16 17 N -0.61 -29.81 3.03 -696.75 -2.11 -31.92 16 18 C -0.27 -14.22 9.62 84.03 0.81 -13.41 16 19 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 20 C -0.05 -2.57 5.01 84.86 0.42 -2.14 16 21 N -0.94 -54.18 11.22 21.65 0.24 -53.93 16 22 Si 0.97 43.37 29.57 68.60 2.03 45.40 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 C 0.15 6.78 5.39 86.35 0.47 7.25 16 27 C 0.05 1.92 6.98 72.08 0.50 2.42 16 28 O -0.39 -12.89 10.13 -148.98 -1.51 -14.39 16 29 C 0.10 2.23 6.77 39.50 0.27 2.49 16 30 H 0.08 1.23 7.79 -2.39 -0.02 1.21 16 31 H 0.07 1.30 6.16 -2.39 -0.01 1.29 16 32 H 0.13 0.64 8.13 -2.38 -0.02 0.62 16 33 H 0.27 0.46 8.06 -2.91 -0.02 0.44 16 34 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.19 3.03 7.75 -2.91 -0.02 3.01 16 36 H 0.41 8.13 7.69 -92.71 -0.71 7.42 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 39 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 41 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 42 H 0.06 3.23 6.35 -2.38 -0.02 3.22 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -73.32 371.50 0.14 -73.19 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.32 Total: 16.20 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 9.61 Total: 34.88 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -10.26 Total: -139.03 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.56 Total: -30.63 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -73.32 0.14 -73.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035400790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.481 kcal (2) G-P(sol) polarization free energy of solvation -73.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds