Wall clock time and date at job start Wed Apr 1 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36170 * 126.23617 * 2 1 4 4 N 1.30058 * 110.11056 * 179.97438 * 3 2 1 5 5 C 1.35773 * 109.43663 * 359.97438 * 4 3 2 6 6 C 1.39489 * 133.74676 * 180.28310 * 5 4 3 7 7 C 1.39677 * 118.05272 * 180.17776 * 6 5 4 8 8 C 1.47689 * 120.38017 * 179.78382 * 7 6 5 9 9 O 1.21569 * 120.00158 * 359.72239 * 8 7 6 10 10 N 1.34776 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99638 * 179.72747 * 10 8 7 12 12 C 1.53003 * 109.46747 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.51225 * 304.99468 * 12 11 10 14 14 C 1.53303 * 109.51133 * 184.89975 * 12 11 10 15 15 N 1.47148 * 108.38258 * 187.77380 * 14 12 11 16 16 C 1.36944 * 120.98030 * 230.55057 * 15 14 12 17 17 H 1.07993 * 119.99760 * 26.23960 * 16 15 14 18 18 C 1.38811 * 120.00044 * 206.23541 * 16 15 14 19 19 N 1.31618 * 119.99957 * 16.92024 * 18 16 15 20 20 Si 1.86799 * 119.99797 * 196.92047 * 18 16 15 21 21 H 1.48498 * 109.47380 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47063 * 120.00078 * 20 18 16 23 23 H 1.48501 * 109.46948 * 239.99909 * 20 18 16 24 24 C 1.47153 * 118.04033 * 50.53382 * 15 14 12 25 25 C 1.53297 * 108.38109 * 309.46391 * 24 15 14 26 26 O 1.42957 * 109.51512 * 65.09783 * 12 11 10 27 27 C 1.39980 * 119.23159 * 359.51476 * 7 6 5 28 28 N 1.31379 * 121.16056 * 0.24393 * 27 7 6 29 29 C 1.32544 * 121.79444 * 0.02562 * 28 27 7 30 30 H 1.08998 * 109.47401 * 270.04843 * 1 2 3 31 31 H 1.09005 * 109.46843 * 30.04351 * 1 2 3 32 32 H 1.08999 * 109.47028 * 150.04317 * 1 2 3 33 33 H 1.07998 * 124.94709 * 359.92105 * 3 2 1 34 34 H 1.07999 * 120.97340 * 359.94161 * 6 5 4 35 35 H 0.96993 * 120.00104 * 359.71973 * 10 8 7 36 36 H 1.08995 * 109.47143 * 299.99119 * 11 10 8 37 37 H 1.08995 * 109.47315 * 59.99990 * 11 10 8 38 38 H 1.09003 * 109.67709 * 307.49334 * 14 12 11 39 39 H 1.09000 * 109.68282 * 68.04758 * 14 12 11 40 40 H 0.97006 * 119.99942 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.68183 * 69.18637 * 24 15 14 42 42 H 1.09003 * 109.68311 * 189.70557 * 24 15 14 43 43 H 1.09001 * 109.51077 * 172.22459 * 25 24 15 44 44 H 1.09001 * 109.51255 * 292.32282 * 25 24 15 45 45 H 1.07998 * 119.41523 * 180.22773 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0983 0.0000 4 7 3.5193 0.7371 0.0005 5 6 3.5977 -0.6184 0.0015 6 6 4.6594 -1.5231 0.0074 7 6 4.3599 -2.8873 0.0025 8 6 5.4442 -3.8901 0.0036 9 8 6.6053 -3.5299 0.0035 10 7 5.1464 -5.2045 -0.0016 11 6 6.2220 -6.1992 -0.0066 12 6 5.6169 -7.6045 -0.0113 13 1 4.9327 -7.7091 0.8308 14 6 6.7369 -8.6446 0.1069 15 7 6.1519 -9.9807 -0.0879 16 6 6.3919 -10.9920 0.8037 17 1 6.6316 -10.7607 1.8310 18 6 6.3270 -12.3145 0.3870 19 7 6.3687 -12.6029 -0.8965 20 14 6.1806 -13.6849 1.6480 21 1 6.1534 -13.1008 3.0130 22 1 4.9270 -14.4446 1.4101 23 1 7.3444 -14.5988 1.5232 24 6 5.3011 -10.1979 -1.2687 25 6 4.2511 -9.0821 -1.3197 26 8 4.9055 -7.8141 -1.2335 27 6 3.0202 -3.2931 0.0025 28 7 2.0437 -2.4142 0.0021 29 6 2.2783 -1.1097 0.0012 30 1 -0.3634 0.0009 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5132 33 1 1.9215 2.1206 -0.0012 34 1 5.6830 -1.1788 0.0116 35 1 4.2200 -5.4919 -0.0019 36 1 6.8367 -6.0651 -0.8966 37 1 6.8383 -6.0724 0.8833 38 1 7.4919 -8.4594 -0.6573 39 1 7.1918 -8.5835 1.0955 40 1 6.3230 -13.5271 -1.1877 41 1 5.9115 -10.1692 -2.1713 42 1 4.8056 -11.1657 -1.1912 43 1 3.6994 -9.1440 -2.2578 44 1 3.5608 -9.1932 -0.4835 45 1 2.7852 -4.3472 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035468267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:09 Heat of formation + Delta-G solvation = 43.624909 kcal Electronic energy + Delta-G solvation = -29129.083448 eV Core-core repulsion = 24955.899521 eV Total energy + Delta-G solvation = -4173.183927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.79216 -40.08144 -38.65229 -38.04859 -35.10121 -34.87762 -34.32239 -32.37639 -31.61194 -30.87513 -30.00885 -27.89713 -27.42685 -25.77291 -24.34346 -23.95935 -23.17490 -21.83804 -21.34855 -20.86295 -19.70928 -18.36934 -18.12399 -17.42300 -16.85116 -16.60378 -16.17460 -16.06738 -15.50885 -15.02245 -14.93896 -14.68615 -14.42021 -14.25187 -13.96710 -13.86342 -13.74784 -13.39558 -13.25531 -13.18973 -13.05684 -12.85651 -12.72647 -12.35575 -11.59110 -11.39533 -11.15800 -11.14639 -10.89292 -10.73614 -10.43368 -10.28722 -10.23220 -10.00331 -9.69357 -9.55172 -9.21761 -9.09787 -9.02551 -8.92984 -8.57184 -6.78315 -5.86916 -3.30583 0.37088 0.47328 1.83838 2.29850 2.74697 3.01034 3.32077 3.40255 3.42294 3.57963 3.60359 3.84251 4.08313 4.20690 4.39032 4.41757 4.46359 4.59313 4.61485 4.64760 4.90705 5.00652 5.13388 5.30738 5.40380 5.45866 5.48997 5.65187 5.74701 5.78008 5.83646 6.00474 6.06624 6.12833 6.25409 6.34590 6.40749 6.45316 6.46663 6.73277 7.07786 7.22275 7.36669 7.45890 7.49659 7.68849 7.82496 8.13932 8.30679 9.08761 9.71483 10.28038 11.21197 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024743 B = 0.001910 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.358227 B =14659.516304 C =15159.152547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.485 5.485 3 C 0.271 3.729 4 N -0.479 5.479 5 C -0.009 4.009 6 C 0.049 3.951 7 C -0.197 4.197 8 C 0.567 3.433 9 O -0.537 6.537 10 N -0.713 5.713 11 C 0.131 3.869 12 C 0.064 3.936 13 H 0.060 0.940 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.255 4.255 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.389 6.389 27 C 0.176 3.824 28 N -0.483 5.483 29 C 0.254 3.746 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.224 0.776 34 H 0.157 0.843 35 H 0.402 0.598 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.255 0.745 41 H 0.028 0.972 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 25.201 1.277 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.177 5.177 3 C -0.015 4.015 4 N -0.197 5.197 5 C -0.129 4.129 6 C 0.021 3.979 7 C -0.205 4.205 8 C 0.353 3.647 9 O -0.415 6.415 10 N -0.364 5.364 11 C 0.007 3.993 12 C 0.004 3.996 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C 0.007 3.993 28 N -0.195 5.195 29 C 0.019 3.981 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.241 0.759 34 H 0.174 0.826 35 H 0.237 0.763 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.303 25.712 1.067 28.969 hybrid contribution -0.570 -1.391 0.692 1.654 sum -13.873 24.321 1.759 28.054 Atomic orbital electron populations 1.22074 0.74998 1.05141 1.03966 1.45084 1.07978 1.04555 1.60133 1.25514 0.84807 0.93137 0.98054 1.70501 1.18307 1.10261 1.20672 1.19544 0.92959 0.91527 1.08881 1.20861 0.99140 0.89533 0.88369 1.20687 0.95047 0.94227 1.10530 1.17766 0.87953 0.82198 0.76817 1.90797 1.20115 1.80471 1.50108 1.45838 1.10971 1.05185 1.74437 1.21479 0.89348 0.85207 1.03260 1.22822 0.95676 0.93403 0.87712 0.92235 1.21443 0.92930 0.86213 0.99989 1.44077 1.54251 1.06449 1.26995 1.19239 1.43894 0.85132 0.90128 0.91258 1.25055 1.00978 0.97733 0.95948 1.70045 1.53445 1.17982 1.13181 0.86183 0.77423 0.82066 0.80862 1.20198 1.21495 1.21625 1.21452 0.91101 0.96852 0.89298 1.23323 0.95581 0.84694 1.00205 1.87790 1.68759 1.36479 1.37859 1.22769 0.86465 0.98452 0.91654 1.66360 1.37246 0.99076 1.16858 1.19119 0.89192 0.88142 1.01651 0.90368 0.89055 0.89013 0.75947 0.82581 0.76265 0.90312 0.89790 0.95150 0.91706 0.93534 0.95345 0.88760 0.90023 0.94065 0.81208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 11.18 59.84 0.67 0.93 16 2 N -0.49 -3.60 3.19 -124.99 -0.40 -4.00 16 3 C 0.27 1.81 12.50 -89.70 -1.12 0.69 16 4 N -0.48 -5.15 11.29 -12.02 -0.14 -5.29 16 5 C -0.01 -0.11 7.23 -84.69 -0.61 -0.72 16 6 C 0.05 0.59 9.75 -38.58 -0.38 0.21 16 7 C -0.20 -2.31 5.89 -104.85 -0.62 -2.92 16 8 C 0.57 7.70 7.77 -12.40 -0.10 7.61 16 9 O -0.54 -9.07 16.40 5.31 0.09 -8.98 16 10 N -0.71 -8.93 5.46 -61.30 -0.33 -9.26 16 11 C 0.13 1.87 5.34 -4.04 -0.02 1.85 16 12 C 0.06 1.06 2.81 -26.57 -0.07 0.98 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 14 C 0.12 2.45 6.02 -3.53 -0.02 2.43 16 15 N -0.59 -14.51 3.05 -171.82 -0.52 -15.04 16 16 C -0.25 -6.80 9.65 -15.06 -0.15 -6.95 16 17 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.04 4.95 -17.43 -0.09 -0.04 16 19 N -0.90 -25.67 11.14 55.49 0.62 -25.05 16 20 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.14 3.22 5.45 -3.53 -0.02 3.20 16 25 C 0.04 0.73 6.98 37.31 0.26 0.99 16 26 O -0.39 -6.95 10.33 -35.23 -0.36 -7.32 16 27 C 0.18 1.81 10.69 -17.09 -0.18 1.63 16 28 N -0.48 -5.38 10.36 -11.97 -0.12 -5.50 16 29 C 0.25 2.78 7.99 -155.63 -1.24 1.54 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.22 0.29 8.06 -52.49 -0.42 -0.13 16 34 H 0.16 1.86 7.72 -52.49 -0.41 1.45 16 35 H 0.40 4.20 6.51 -40.82 -0.27 3.93 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.17 1.30 6.39 -52.49 -0.34 0.96 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -35.46 376.73 -10.15 -45.62 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.94 Total: 1.56 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -3.69 Total: 11.43 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.90 Total: -64.13 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.28 Total: -16.30 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.46 -10.15 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035468267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.242 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds