Wall clock time and date at job start Wed Apr 1 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36170 * 126.23617 * 2 1 4 4 N 1.30058 * 110.11056 * 179.97438 * 3 2 1 5 5 C 1.35773 * 109.43663 * 359.97438 * 4 3 2 6 6 C 1.39489 * 133.74676 * 180.28310 * 5 4 3 7 7 C 1.39677 * 118.05272 * 180.17776 * 6 5 4 8 8 C 1.47689 * 120.38017 * 179.78382 * 7 6 5 9 9 O 1.21569 * 120.00158 * 359.72239 * 8 7 6 10 10 N 1.34776 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99638 * 179.72747 * 10 8 7 12 12 C 1.53003 * 109.46747 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.51225 * 304.99468 * 12 11 10 14 14 C 1.53303 * 109.51133 * 184.89975 * 12 11 10 15 15 N 1.47148 * 108.38258 * 187.77380 * 14 12 11 16 16 C 1.36944 * 120.98030 * 230.55057 * 15 14 12 17 17 H 1.07993 * 119.99760 * 26.23960 * 16 15 14 18 18 C 1.38811 * 120.00044 * 206.23541 * 16 15 14 19 19 N 1.31618 * 119.99957 * 16.92024 * 18 16 15 20 20 Si 1.86799 * 119.99797 * 196.92047 * 18 16 15 21 21 H 1.48498 * 109.47380 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47063 * 120.00078 * 20 18 16 23 23 H 1.48501 * 109.46948 * 239.99909 * 20 18 16 24 24 C 1.47153 * 118.04033 * 50.53382 * 15 14 12 25 25 C 1.53297 * 108.38109 * 309.46391 * 24 15 14 26 26 O 1.42957 * 109.51512 * 65.09783 * 12 11 10 27 27 C 1.39980 * 119.23159 * 359.51476 * 7 6 5 28 28 N 1.31379 * 121.16056 * 0.24393 * 27 7 6 29 29 C 1.32544 * 121.79444 * 0.02562 * 28 27 7 30 30 H 1.08998 * 109.47401 * 270.04843 * 1 2 3 31 31 H 1.09005 * 109.46843 * 30.04351 * 1 2 3 32 32 H 1.08999 * 109.47028 * 150.04317 * 1 2 3 33 33 H 1.07998 * 124.94709 * 359.92105 * 3 2 1 34 34 H 1.07999 * 120.97340 * 359.94161 * 6 5 4 35 35 H 0.96993 * 120.00104 * 359.71973 * 10 8 7 36 36 H 1.08995 * 109.47143 * 299.99119 * 11 10 8 37 37 H 1.08995 * 109.47315 * 59.99990 * 11 10 8 38 38 H 1.09003 * 109.67709 * 307.49334 * 14 12 11 39 39 H 1.09000 * 109.68282 * 68.04758 * 14 12 11 40 40 H 0.97006 * 119.99942 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.68183 * 69.18637 * 24 15 14 42 42 H 1.09003 * 109.68311 * 189.70557 * 24 15 14 43 43 H 1.09001 * 109.51077 * 172.22459 * 25 24 15 44 44 H 1.09001 * 109.51255 * 292.32282 * 25 24 15 45 45 H 1.07998 * 119.41523 * 180.22773 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0983 0.0000 4 7 3.5193 0.7371 0.0005 5 6 3.5977 -0.6184 0.0015 6 6 4.6594 -1.5231 0.0074 7 6 4.3599 -2.8873 0.0025 8 6 5.4442 -3.8901 0.0036 9 8 6.6053 -3.5299 0.0035 10 7 5.1464 -5.2045 -0.0016 11 6 6.2220 -6.1992 -0.0066 12 6 5.6169 -7.6045 -0.0113 13 1 4.9327 -7.7091 0.8308 14 6 6.7369 -8.6446 0.1069 15 7 6.1519 -9.9807 -0.0879 16 6 6.3919 -10.9920 0.8037 17 1 6.6316 -10.7607 1.8310 18 6 6.3270 -12.3145 0.3870 19 7 6.3687 -12.6029 -0.8965 20 14 6.1806 -13.6849 1.6480 21 1 6.1534 -13.1008 3.0130 22 1 4.9270 -14.4446 1.4101 23 1 7.3444 -14.5988 1.5232 24 6 5.3011 -10.1979 -1.2687 25 6 4.2511 -9.0821 -1.3197 26 8 4.9055 -7.8141 -1.2335 27 6 3.0202 -3.2931 0.0025 28 7 2.0437 -2.4142 0.0021 29 6 2.2783 -1.1097 0.0012 30 1 -0.3634 0.0009 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5132 33 1 1.9215 2.1206 -0.0012 34 1 5.6830 -1.1788 0.0116 35 1 4.2200 -5.4919 -0.0019 36 1 6.8367 -6.0651 -0.8966 37 1 6.8383 -6.0724 0.8833 38 1 7.4919 -8.4594 -0.6573 39 1 7.1918 -8.5835 1.0955 40 1 6.3230 -13.5271 -1.1877 41 1 5.9115 -10.1692 -2.1713 42 1 4.8056 -11.1657 -1.1912 43 1 3.6994 -9.1440 -2.2578 44 1 3.5608 -9.1932 -0.4835 45 1 2.7852 -4.3472 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035468267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:08 Heat of formation + Delta-G solvation = 19.216116 kcal Electronic energy + Delta-G solvation = -29130.141892 eV Core-core repulsion = 24955.899521 eV Total energy + Delta-G solvation = -4174.242372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.46930 -41.13597 -40.05734 -38.99647 -36.53056 -35.85812 -35.54389 -33.45964 -33.10346 -32.35016 -30.93780 -29.21885 -28.22901 -27.19696 -25.28984 -24.95782 -24.74383 -23.27507 -22.06869 -21.89307 -21.26240 -19.27912 -18.85098 -18.83402 -18.14783 -17.47630 -17.20665 -17.07571 -16.92345 -16.44207 -16.16394 -15.98726 -15.55716 -15.43135 -15.10807 -15.00422 -14.70995 -14.57745 -14.47487 -14.35696 -14.17664 -13.72744 -13.49822 -13.41325 -13.19718 -13.00309 -12.70608 -12.48823 -12.16379 -12.11348 -12.03883 -11.85226 -11.83792 -11.39148 -11.22178 -10.78219 -10.53670 -10.38162 -10.24120 -9.80650 -9.72713 -8.74109 -7.90288 -5.37403 -0.46759 -0.28604 1.29955 1.46690 1.48787 1.59273 1.63775 1.79725 1.96766 2.48735 2.70529 2.79973 2.93684 3.24698 3.26555 3.49042 3.51369 3.61300 3.72389 3.95148 4.02648 4.06993 4.10798 4.27118 4.32304 4.44770 4.51351 4.55980 4.65157 4.74572 4.75160 4.75662 4.78300 4.85519 4.93545 5.01466 5.09216 5.27167 5.29904 5.34920 5.57742 5.63418 5.89292 6.27608 6.35138 6.43974 6.59339 6.60926 7.07455 7.09827 7.75789 8.29006 9.15790 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024743 B = 0.001910 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.358227 B =14659.516304 C =15159.152547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.295 3.705 4 N -0.524 5.524 5 C -0.028 4.028 6 C 0.034 3.966 7 C -0.201 4.201 8 C 0.572 3.428 9 O -0.576 6.576 10 N -0.702 5.702 11 C 0.141 3.859 12 C 0.078 3.922 13 H 0.074 0.926 14 C 0.115 3.885 15 N -0.613 5.613 16 C -0.263 4.263 17 H 0.074 0.926 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.295 1.295 24 C 0.141 3.859 25 C 0.055 3.945 26 O -0.389 6.389 27 C 0.178 3.822 28 N -0.489 5.489 29 C 0.239 3.761 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.278 0.722 34 H 0.146 0.854 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.251 0.749 41 H -0.003 1.003 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.054 0.946 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.556 27.214 2.285 31.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.173 5.173 3 C 0.010 3.990 4 N -0.243 5.243 5 C -0.147 4.147 6 C 0.006 3.994 7 C -0.210 4.210 8 C 0.359 3.641 9 O -0.456 6.456 10 N -0.354 5.354 11 C 0.016 3.984 12 C 0.019 3.981 13 H 0.092 0.908 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.393 4.393 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.215 1.215 23 H -0.222 1.222 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 C 0.008 3.992 28 N -0.201 5.201 29 C 0.003 3.997 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.101 0.899 33 H 0.293 0.707 34 H 0.164 0.836 35 H 0.252 0.748 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.035 0.965 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.072 0.928 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -16.096 27.756 2.086 32.153 hybrid contribution 0.257 -1.864 0.364 1.917 sum -15.839 25.892 2.450 30.451 Atomic orbital electron populations 1.22407 0.72393 1.06610 1.05204 1.45473 1.09457 1.03492 1.58928 1.26620 0.83577 0.94733 0.94115 1.70493 1.20815 1.09672 1.23325 1.19714 0.93371 0.92355 1.09302 1.20877 0.99085 0.90168 0.89271 1.20482 0.95098 0.93478 1.11898 1.17974 0.87797 0.82508 0.75828 1.90777 1.21784 1.81053 1.52008 1.45655 1.11226 1.04555 1.73924 1.21261 0.89557 0.84351 1.03187 1.22665 0.94425 0.93240 0.87792 0.90774 1.21614 0.94039 0.85398 1.00032 1.44356 1.55036 1.07497 1.26820 1.19592 1.42912 0.85985 0.90776 0.90853 1.25832 1.01378 0.99950 0.97603 1.70201 1.55037 1.18026 1.14984 0.85158 0.76806 0.79012 0.79150 1.18876 1.21460 1.22215 1.21331 0.91612 0.97696 0.87784 1.23149 0.94031 0.82916 1.02203 1.87809 1.68672 1.35754 1.38556 1.23094 0.85599 0.99525 0.90961 1.66449 1.37223 0.99339 1.17128 1.19454 0.89773 0.88817 1.01695 0.89211 0.85284 0.89909 0.70704 0.83647 0.74772 0.91588 0.88880 0.96456 0.90829 0.93992 0.98449 0.91464 0.87386 0.92784 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 11.18 127.77 1.43 1.66 16 2 N -0.48 -5.85 3.19 -549.36 -1.75 -7.60 16 3 C 0.30 3.05 12.50 180.03 2.25 5.30 16 4 N -0.52 -10.71 11.29 -191.94 -2.17 -12.87 16 5 C -0.03 -0.66 7.23 39.46 0.29 -0.37 16 6 C 0.03 0.84 9.75 22.92 0.22 1.07 16 7 C -0.20 -4.69 5.89 -20.01 -0.12 -4.81 16 8 C 0.57 15.41 7.77 86.74 0.67 16.08 16 9 O -0.58 -19.82 16.40 -3.93 -0.06 -19.89 16 10 N -0.70 -16.62 5.46 -466.13 -2.54 -19.16 16 11 C 0.14 3.88 5.34 86.38 0.46 4.35 16 12 C 0.08 2.48 2.81 30.70 0.09 2.56 16 13 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 14 C 0.12 4.64 6.02 86.36 0.52 5.16 16 15 N -0.61 -30.12 3.05 -697.52 -2.13 -32.25 16 16 C -0.26 -14.08 9.65 84.03 0.81 -13.26 16 17 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 18 C -0.05 -2.86 4.95 84.86 0.42 -2.44 16 19 N -0.94 -54.65 11.14 21.65 0.24 -54.41 16 20 Si 0.97 43.85 29.59 68.60 2.03 45.88 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 C 0.14 6.68 5.45 86.35 0.47 7.15 16 25 C 0.05 1.93 6.98 72.08 0.50 2.43 16 26 O -0.39 -13.19 10.33 -148.98 -1.54 -14.73 16 27 C 0.18 3.43 10.69 85.18 0.91 4.34 16 28 N -0.49 -10.21 10.36 -191.77 -1.99 -12.20 16 29 C 0.24 4.92 7.99 133.91 1.07 5.99 16 30 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.13 -0.55 8.14 -2.38 -0.02 -0.57 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.28 -0.66 8.06 -2.91 -0.02 -0.69 16 34 H 0.15 3.77 7.72 -2.91 -0.02 3.74 16 35 H 0.41 7.69 6.51 -92.71 -0.60 7.09 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 40 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 41 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 42 H 0.07 3.53 6.14 -2.39 -0.01 3.51 16 43 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.20 2.52 6.39 -2.91 -0.02 2.51 16 Total: -1.00 -79.84 376.73 0.52 -79.32 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.43 Total: 12.72 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 10.00 Total: 35.19 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -10.34 Total: -138.49 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.60 Total: -34.61 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -79.84 0.52 -79.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035468267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.535 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds