Wall clock time and date at job start Wed Apr 1 2020 03:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36160 * 126.23700 * 2 1 4 4 N 1.30054 * 110.11716 * 180.02562 * 3 2 1 5 5 C 1.35778 * 109.42939 * 359.77129 * 4 3 2 6 6 C 1.39490 * 133.73749 * 180.02562 * 5 4 3 7 7 C 1.39674 * 118.04624 * 179.97438 * 6 5 4 8 8 C 1.47690 * 120.38070 * 180.02562 * 7 6 5 9 9 O 1.21578 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99827 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47116 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.50692 * 59.99976 * 12 11 10 14 14 C 1.53288 * 109.51339 * 180.10350 * 12 11 10 15 15 N 1.47155 * 108.38638 * 172.22804 * 14 12 11 16 16 C 1.36939 * 120.98228 * 129.48245 * 15 14 12 17 17 H 1.08003 * 119.99858 * 206.21981 * 16 15 14 18 18 C 1.38804 * 119.99928 * 26.22681 * 16 15 14 19 19 N 1.31623 * 120.00299 * 16.91590 * 18 16 15 20 20 Si 1.86807 * 119.99892 * 196.91581 * 18 16 15 21 21 H 1.48491 * 109.47123 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46969 * 120.00010 * 20 18 16 23 23 H 1.48503 * 109.47020 * 239.99882 * 20 18 16 24 24 C 1.47151 * 118.03443 * 309.47020 * 15 14 12 25 25 C 1.53296 * 108.38835 * 50.52616 * 24 15 14 26 26 O 1.42954 * 109.26636 * 307.72730 * 25 24 15 27 27 C 1.39983 * 119.23953 * 359.97438 * 7 6 5 28 28 N 1.31388 * 121.15597 * 0.02562 * 27 7 6 29 29 C 1.32549 * 121.79425 * 359.95896 * 28 27 7 30 30 H 1.09000 * 109.47402 * 270.37601 * 1 2 3 31 31 H 1.09002 * 109.47100 * 30.38135 * 1 2 3 32 32 H 1.09006 * 109.47202 * 150.37451 * 1 2 3 33 33 H 1.08009 * 124.94738 * 359.77919 * 3 2 1 34 34 H 1.07993 * 120.97961 * 359.96948 * 6 5 4 35 35 H 0.96999 * 120.00290 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47333 * 300.00153 * 11 10 8 37 37 H 1.09006 * 109.46923 * 59.99987 * 11 10 8 38 38 H 1.09000 * 109.68012 * 291.94966 * 14 12 11 39 39 H 1.08996 * 109.68496 * 52.46822 * 14 12 11 40 40 H 0.96999 * 120.00403 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.68439 * 170.26022 * 24 15 14 42 42 H 1.09010 * 109.67801 * 290.76756 * 24 15 14 43 43 H 1.09004 * 109.50919 * 67.62736 * 25 24 15 44 44 H 1.09001 * 109.51271 * 187.77248 * 25 24 15 45 45 H 1.07998 * 119.42333 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0982 0.0000 4 7 3.5193 0.7371 -0.0005 5 6 3.5977 -0.6184 0.0042 6 6 4.6595 -1.5229 0.0063 7 6 4.3600 -2.8872 0.0120 8 6 5.4443 -3.8899 0.0150 9 8 6.6055 -3.5297 0.0121 10 7 5.1466 -5.2044 0.0211 11 6 6.2222 -6.1990 0.0235 12 6 5.6173 -7.6044 0.0310 13 1 4.9998 -7.7397 -0.8570 14 6 6.7420 -8.6459 0.0362 15 7 6.1425 -9.9755 0.2322 16 6 6.4500 -11.0173 -0.6016 17 1 5.7454 -11.8239 -0.7405 18 6 7.6674 -11.0367 -1.2681 19 7 8.6507 -10.2598 -0.8654 20 14 7.9103 -12.1653 -2.7367 21 1 6.6622 -12.9306 -2.9846 22 1 8.2403 -11.3535 -3.9356 23 1 9.0220 -13.1094 -2.4569 24 6 5.2029 -10.1524 1.3508 25 6 4.1532 -9.0374 1.2817 26 8 4.8137 -7.7721 1.2015 27 6 3.0203 -3.2931 0.0159 28 7 2.0437 -2.4142 0.0137 29 6 2.2783 -1.1096 0.0087 30 1 -0.3634 0.0067 1.0276 31 1 -0.3633 0.8866 -0.5198 32 1 -0.3634 -0.8934 -0.5080 33 1 1.9215 2.1206 -0.0034 34 1 5.6831 -1.1786 0.0035 35 1 4.2202 -5.4919 0.0238 36 1 6.8365 -6.0722 -0.8680 37 1 6.8393 -6.0647 0.9120 38 1 7.2717 -8.6189 -0.9160 39 1 7.4364 -8.4324 0.8488 40 1 9.5013 -10.2731 -1.3314 41 1 4.7136 -11.1230 1.2693 42 1 5.7422 -10.0916 2.2962 43 1 3.5299 -9.1785 0.3986 44 1 3.5309 -9.0673 2.1760 45 1 2.7854 -4.3472 0.0199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035468268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:12 Heat of formation + Delta-G solvation = 43.738973 kcal Electronic energy + Delta-G solvation = -29313.296151 eV Core-core repulsion = 25140.117171 eV Total energy + Delta-G solvation = -4173.178981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.75252 -39.99480 -38.62163 -37.99400 -35.03095 -34.80443 -34.33881 -32.31182 -31.41915 -31.07529 -29.98327 -27.82548 -27.32548 -25.78981 -24.29539 -23.90338 -23.27425 -21.71732 -21.30525 -20.76258 -19.69453 -18.31198 -18.07599 -17.39730 -16.84954 -16.56717 -16.11766 -16.00670 -15.38596 -15.10135 -14.82514 -14.65416 -14.36729 -14.20260 -13.92166 -13.89761 -13.69050 -13.36340 -13.25275 -13.19063 -12.91988 -12.87933 -12.72061 -12.22613 -11.55696 -11.35523 -11.13195 -11.10206 -10.87525 -10.74114 -10.44369 -10.26556 -10.18517 -10.00301 -9.67612 -9.50916 -9.15315 -9.09925 -8.97393 -8.83544 -8.57347 -6.78159 -5.86647 -3.30452 0.41752 0.52360 1.87242 2.33683 2.82412 3.10244 3.33055 3.40976 3.42844 3.64029 3.64927 3.88107 4.11387 4.23152 4.41666 4.44574 4.51586 4.62933 4.64810 4.71077 4.93398 5.06804 5.18064 5.33656 5.44268 5.52002 5.60050 5.71671 5.79978 5.84166 5.91334 6.00287 6.08265 6.12585 6.21273 6.34071 6.44463 6.47273 6.60712 6.76265 7.04662 7.26173 7.40878 7.45921 7.57116 7.69226 7.81198 8.24422 8.30901 9.08602 9.71563 10.28340 11.21432 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.002065 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.381117 B =13558.947387 C =14078.626166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.485 5.485 3 C 0.271 3.729 4 N -0.479 5.479 5 C -0.009 4.009 6 C 0.048 3.952 7 C -0.195 4.195 8 C 0.565 3.435 9 O -0.536 6.536 10 N -0.712 5.712 11 C 0.133 3.867 12 C 0.054 3.946 13 H 0.057 0.943 14 C 0.152 3.848 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.108 3.892 25 C 0.050 3.950 26 O -0.390 6.390 27 C 0.176 3.824 28 N -0.484 5.484 29 C 0.254 3.746 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.224 0.776 34 H 0.157 0.843 35 H 0.401 0.599 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.032 0.968 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 20.566 1.815 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.178 5.178 3 C -0.016 4.016 4 N -0.197 5.197 5 C -0.129 4.129 6 C 0.020 3.980 7 C -0.203 4.203 8 C 0.350 3.650 9 O -0.414 6.414 10 N -0.363 5.363 11 C 0.009 3.991 12 C -0.005 4.005 13 H 0.075 0.925 14 C 0.025 3.975 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.310 6.310 27 C 0.006 3.994 28 N -0.196 5.196 29 C 0.018 3.982 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.240 0.760 34 H 0.174 0.826 35 H 0.236 0.764 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.510 21.243 1.873 27.593 hybrid contribution -0.241 -1.163 -0.864 1.468 sum -17.751 20.080 1.010 26.820 Atomic orbital electron populations 1.22066 0.75051 1.05097 1.03926 1.45071 1.07944 1.04563 1.60221 1.25504 0.84822 0.93122 0.98139 1.70502 1.18293 1.10289 1.20638 1.19545 0.92965 0.91508 1.08880 1.20870 0.99153 0.89552 0.88392 1.20715 0.95080 0.94253 1.10269 1.17780 0.87946 0.82253 0.76993 1.90806 1.20094 1.80449 1.50055 1.45859 1.11003 1.05172 1.74285 1.21487 0.89187 0.84990 1.03413 1.23164 0.95114 0.94461 0.87803 0.92495 1.21308 0.91003 0.82204 1.02938 1.44055 1.50977 1.06692 1.30085 1.19222 0.98619 1.01529 1.19169 0.91299 1.25064 0.94807 0.99098 1.00669 1.70024 1.02610 1.41871 1.39999 0.86198 0.77733 0.80064 0.82620 1.20246 1.21409 1.21624 1.21605 0.91927 0.96498 0.91753 1.23005 0.94632 0.84827 1.00307 1.87775 1.64463 1.35215 1.43507 1.22774 0.86481 0.98433 0.91665 1.66365 1.37245 0.99065 1.16939 1.19113 0.89181 0.88144 1.01720 0.90401 0.89089 0.89046 0.75973 0.82573 0.76371 0.89642 0.90397 0.88532 0.94988 0.93418 0.91988 0.95544 0.93825 0.89990 0.81204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.18 59.85 0.67 0.95 16 2 N -0.49 -3.77 3.19 -124.99 -0.40 -4.16 16 3 C 0.27 1.90 12.50 -89.72 -1.12 0.78 16 4 N -0.48 -5.37 11.29 -12.02 -0.14 -5.51 16 5 C -0.01 -0.12 7.23 -84.69 -0.61 -0.73 16 6 C 0.05 0.61 9.75 -38.58 -0.38 0.24 16 7 C -0.19 -2.43 5.89 -104.85 -0.62 -3.05 16 8 C 0.56 8.31 7.77 -12.40 -0.10 8.21 16 9 O -0.54 -9.77 16.40 5.30 0.09 -9.69 16 10 N -0.71 -9.80 5.40 -61.29 -0.33 -10.13 16 11 C 0.13 2.17 5.37 -4.04 -0.02 2.15 16 12 C 0.05 0.98 2.86 -26.58 -0.08 0.91 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.15 3.50 4.73 -3.54 -0.02 3.48 16 15 N -0.59 -14.51 3.05 -171.83 -0.52 -15.04 16 16 C -0.26 -6.84 9.65 -15.06 -0.15 -6.98 16 17 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 19 N -0.90 -25.60 11.14 55.49 0.62 -24.98 16 20 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.11 2.20 6.74 -3.53 -0.02 2.18 16 25 C 0.05 0.84 6.98 37.31 0.26 1.10 16 26 O -0.39 -6.92 10.14 -35.23 -0.36 -7.27 16 27 C 0.18 1.90 10.69 -17.09 -0.18 1.72 16 28 N -0.48 -5.58 10.36 -11.96 -0.12 -5.70 16 29 C 0.25 2.88 7.99 -155.63 -1.24 1.64 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.22 0.36 8.06 -52.48 -0.42 -0.06 16 34 H 0.16 1.98 7.72 -52.49 -0.41 1.58 16 35 H 0.40 4.58 6.39 -40.82 -0.26 4.32 16 36 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 42 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.17 1.39 6.39 -52.49 -0.34 1.05 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -35.38 376.43 -10.14 -45.53 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.93 Total: 2.52 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -3.69 Total: 12.59 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.90 Total: -65.52 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.27 Total: -16.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.38 -10.14 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035468268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.267 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds