Wall clock time and date at job start Wed Apr 1 2020 03:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36160 * 126.23700 * 2 1 4 4 N 1.30054 * 110.11716 * 180.02562 * 3 2 1 5 5 C 1.35778 * 109.42939 * 359.77129 * 4 3 2 6 6 C 1.39490 * 133.73749 * 180.02562 * 5 4 3 7 7 C 1.39674 * 118.04624 * 179.97438 * 6 5 4 8 8 C 1.47690 * 120.38070 * 180.02562 * 7 6 5 9 9 O 1.21578 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99827 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47116 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.50692 * 59.99976 * 12 11 10 14 14 C 1.53288 * 109.51339 * 180.10350 * 12 11 10 15 15 N 1.47155 * 108.38638 * 172.22804 * 14 12 11 16 16 C 1.36939 * 120.98228 * 129.48245 * 15 14 12 17 17 H 1.08003 * 119.99858 * 206.21981 * 16 15 14 18 18 C 1.38804 * 119.99928 * 26.22681 * 16 15 14 19 19 N 1.31623 * 120.00299 * 16.91590 * 18 16 15 20 20 Si 1.86807 * 119.99892 * 196.91581 * 18 16 15 21 21 H 1.48491 * 109.47123 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46969 * 120.00010 * 20 18 16 23 23 H 1.48503 * 109.47020 * 239.99882 * 20 18 16 24 24 C 1.47151 * 118.03443 * 309.47020 * 15 14 12 25 25 C 1.53296 * 108.38835 * 50.52616 * 24 15 14 26 26 O 1.42954 * 109.26636 * 307.72730 * 25 24 15 27 27 C 1.39983 * 119.23953 * 359.97438 * 7 6 5 28 28 N 1.31388 * 121.15597 * 0.02562 * 27 7 6 29 29 C 1.32549 * 121.79425 * 359.95896 * 28 27 7 30 30 H 1.09000 * 109.47402 * 270.37601 * 1 2 3 31 31 H 1.09002 * 109.47100 * 30.38135 * 1 2 3 32 32 H 1.09006 * 109.47202 * 150.37451 * 1 2 3 33 33 H 1.08009 * 124.94738 * 359.77919 * 3 2 1 34 34 H 1.07993 * 120.97961 * 359.96948 * 6 5 4 35 35 H 0.96999 * 120.00290 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47333 * 300.00153 * 11 10 8 37 37 H 1.09006 * 109.46923 * 59.99987 * 11 10 8 38 38 H 1.09000 * 109.68012 * 291.94966 * 14 12 11 39 39 H 1.08996 * 109.68496 * 52.46822 * 14 12 11 40 40 H 0.96999 * 120.00403 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.68439 * 170.26022 * 24 15 14 42 42 H 1.09010 * 109.67801 * 290.76756 * 24 15 14 43 43 H 1.09004 * 109.50919 * 67.62736 * 25 24 15 44 44 H 1.09001 * 109.51271 * 187.77248 * 25 24 15 45 45 H 1.07998 * 119.42333 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2699 1.0982 0.0000 4 7 3.5193 0.7371 -0.0005 5 6 3.5977 -0.6184 0.0042 6 6 4.6595 -1.5229 0.0063 7 6 4.3600 -2.8872 0.0120 8 6 5.4443 -3.8899 0.0150 9 8 6.6055 -3.5297 0.0121 10 7 5.1466 -5.2044 0.0211 11 6 6.2222 -6.1990 0.0235 12 6 5.6173 -7.6044 0.0310 13 1 4.9998 -7.7397 -0.8570 14 6 6.7420 -8.6459 0.0362 15 7 6.1425 -9.9755 0.2322 16 6 6.4500 -11.0173 -0.6016 17 1 5.7454 -11.8239 -0.7405 18 6 7.6674 -11.0367 -1.2681 19 7 8.6507 -10.2598 -0.8654 20 14 7.9103 -12.1653 -2.7367 21 1 6.6622 -12.9306 -2.9846 22 1 8.2403 -11.3535 -3.9356 23 1 9.0220 -13.1094 -2.4569 24 6 5.2029 -10.1524 1.3508 25 6 4.1532 -9.0374 1.2817 26 8 4.8137 -7.7721 1.2015 27 6 3.0203 -3.2931 0.0159 28 7 2.0437 -2.4142 0.0137 29 6 2.2783 -1.1096 0.0087 30 1 -0.3634 0.0067 1.0276 31 1 -0.3633 0.8866 -0.5198 32 1 -0.3634 -0.8934 -0.5080 33 1 1.9215 2.1206 -0.0034 34 1 5.6831 -1.1786 0.0035 35 1 4.2202 -5.4919 0.0238 36 1 6.8365 -6.0722 -0.8680 37 1 6.8393 -6.0647 0.9120 38 1 7.2717 -8.6189 -0.9160 39 1 7.4364 -8.4324 0.8488 40 1 9.5013 -10.2731 -1.3314 41 1 4.7136 -11.1230 1.2693 42 1 5.7422 -10.0916 2.2962 43 1 3.5299 -9.1785 0.3986 44 1 3.5309 -9.0673 2.1760 45 1 2.7854 -4.3472 0.0199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035468268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:11 Heat of formation + Delta-G solvation = 19.262556 kcal Electronic energy + Delta-G solvation = -29314.357529 eV Core-core repulsion = 25140.117171 eV Total energy + Delta-G solvation = -4174.240358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.47346 -41.14562 -40.05353 -38.99974 -36.48446 -35.91759 -35.55054 -33.32964 -33.16759 -32.46699 -30.92881 -29.08204 -28.24688 -27.26481 -25.29783 -24.99546 -24.77442 -23.20811 -22.06401 -21.87399 -21.28751 -19.28105 -18.91273 -18.84117 -18.09679 -17.48147 -17.22770 -17.15889 -16.85808 -16.41871 -16.11405 -16.01326 -15.55780 -15.44505 -15.08569 -15.01935 -14.70297 -14.60562 -14.46788 -14.36722 -14.18305 -13.76311 -13.49448 -13.42429 -13.15497 -12.99993 -12.69122 -12.49034 -12.17778 -12.11663 -12.05109 -11.85837 -11.83769 -11.37862 -11.22306 -10.78601 -10.53935 -10.39013 -10.25662 -9.81019 -9.73175 -8.73992 -7.90215 -5.37497 -0.47600 -0.29160 1.29595 1.46326 1.48617 1.58840 1.63370 1.79172 1.94756 2.48515 2.69771 2.80229 2.93527 3.23437 3.26942 3.49199 3.51504 3.60956 3.72308 3.96008 4.05785 4.08647 4.10741 4.28788 4.32172 4.45379 4.48654 4.54933 4.63622 4.69706 4.75110 4.75554 4.81334 4.87805 4.99666 5.01709 5.10057 5.25732 5.28572 5.34129 5.55667 5.61992 5.89271 6.28271 6.34844 6.43962 6.59297 6.60163 7.06779 7.09881 7.76017 8.29314 9.15622 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.002065 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.381117 B =13558.947387 C =14078.626166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.296 3.704 4 N -0.525 5.525 5 C -0.028 4.028 6 C 0.033 3.967 7 C -0.200 4.200 8 C 0.569 3.431 9 O -0.578 6.578 10 N -0.698 5.698 11 C 0.143 3.857 12 C 0.076 3.924 13 H 0.069 0.931 14 C 0.158 3.842 15 N -0.614 5.614 16 C -0.263 4.263 17 H 0.075 0.925 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.263 1.263 22 H -0.290 1.290 23 H -0.295 1.295 24 C 0.101 3.899 25 C 0.057 3.943 26 O -0.389 6.389 27 C 0.179 3.821 28 N -0.487 5.487 29 C 0.241 3.759 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.278 0.722 34 H 0.144 0.856 35 H 0.416 0.584 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.000 1.000 40 H 0.251 0.749 41 H 0.072 0.928 42 H 0.014 0.986 43 H 0.057 0.943 44 H 0.121 0.879 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.163 21.761 1.595 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.173 5.173 3 C 0.010 3.990 4 N -0.244 5.244 5 C -0.147 4.147 6 C 0.005 3.995 7 C -0.209 4.209 8 C 0.356 3.644 9 O -0.459 6.459 10 N -0.350 5.350 11 C 0.019 3.981 12 C 0.016 3.984 13 H 0.087 0.913 14 C 0.031 3.969 15 N -0.338 5.338 16 C -0.393 4.393 17 H 0.092 0.908 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.216 1.216 23 H -0.222 1.222 24 C -0.025 4.025 25 C -0.020 4.020 26 O -0.308 6.308 27 C 0.009 3.991 28 N -0.199 5.199 29 C 0.004 3.996 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.294 0.706 34 H 0.162 0.838 35 H 0.254 0.746 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -21.587 22.435 1.672 31.179 hybrid contribution 0.890 -1.443 -0.712 1.839 sum -20.697 20.993 0.960 29.495 Atomic orbital electron populations 1.22415 0.72323 1.06636 1.05230 1.45470 1.09475 1.03428 1.58939 1.26628 0.83548 0.94756 0.94060 1.70493 1.20881 1.09650 1.23348 1.19693 0.93356 0.92361 1.09307 1.20868 0.99097 0.90201 0.89332 1.20454 0.95068 0.93367 1.11968 1.18072 0.87891 0.82567 0.75842 1.90784 1.21991 1.81073 1.52052 1.45612 1.11097 1.04447 1.73849 1.21174 0.89579 0.84900 1.02497 1.22762 0.93451 0.93509 0.88632 0.91280 1.21096 0.92164 0.83547 1.00078 1.44356 1.51553 1.06693 1.31241 1.19581 0.98537 1.01982 1.19170 0.90773 1.25838 0.94721 1.00917 1.03260 1.70186 1.02909 1.43812 1.41255 0.85183 0.77735 0.78142 0.79234 1.18734 1.21626 1.22193 1.21843 0.92010 0.98857 0.89762 1.23083 0.93498 0.82584 1.02851 1.87794 1.64103 1.35783 1.43098 1.23093 0.85472 0.99572 0.90916 1.66465 1.37058 0.99281 1.17116 1.19447 0.89721 0.88841 1.01621 0.89208 0.85267 0.89834 0.70641 0.83831 0.74634 0.90212 0.91977 0.91438 0.98211 0.93983 0.90975 0.96791 0.92494 0.86086 0.78620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.18 127.77 1.43 1.67 16 2 N -0.48 -6.07 3.19 -549.35 -1.75 -7.83 16 3 C 0.30 3.23 12.50 180.03 2.25 5.48 16 4 N -0.52 -11.21 11.29 -191.94 -2.17 -13.38 16 5 C -0.03 -0.68 7.23 39.46 0.29 -0.40 16 6 C 0.03 0.88 9.75 22.92 0.22 1.10 16 7 C -0.20 -5.05 5.89 -20.01 -0.12 -5.17 16 8 C 0.57 17.10 7.77 86.74 0.67 17.77 16 9 O -0.58 -22.13 16.40 -3.96 -0.06 -22.20 16 10 N -0.70 -18.92 5.40 -466.09 -2.52 -21.44 16 11 C 0.14 4.77 5.37 86.38 0.46 5.23 16 12 C 0.08 2.73 2.86 30.69 0.09 2.82 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.16 7.50 4.73 86.35 0.41 7.91 16 15 N -0.61 -30.20 3.05 -697.55 -2.13 -32.33 16 16 C -0.26 -14.08 9.65 84.03 0.81 -13.27 16 17 H 0.07 3.82 7.88 -2.91 -0.02 3.79 16 18 C -0.05 -2.86 4.95 84.86 0.42 -2.44 16 19 N -0.94 -55.10 11.14 21.65 0.24 -54.85 16 20 Si 0.97 44.15 29.59 68.60 2.03 46.17 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 C 0.10 3.97 6.74 86.35 0.58 4.56 16 25 C 0.06 1.75 6.98 72.08 0.50 2.25 16 26 O -0.39 -13.04 10.14 -148.98 -1.51 -14.55 16 27 C 0.18 3.66 10.69 85.18 0.91 4.57 16 28 N -0.49 -10.47 10.36 -191.76 -1.99 -12.46 16 29 C 0.24 5.12 7.99 133.91 1.07 6.19 16 30 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.28 -0.53 8.06 -2.91 -0.02 -0.55 16 34 H 0.14 4.02 7.72 -2.91 -0.02 4.00 16 35 H 0.42 8.72 6.39 -92.71 -0.59 8.13 16 36 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 38 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.07 2.66 7.96 -2.39 -0.02 2.64 16 42 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.20 2.73 6.39 -2.91 -0.02 2.71 16 Total: -1.00 -80.83 376.43 0.59 -80.25 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.44 Total: 14.33 kcal Atomic # 6 Polarization: 28.28 SS G_CDS: 10.00 Total: 38.28 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -10.31 Total: -142.28 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.58 Total: -36.75 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -80.83 0.59 -80.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035468268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.512 kcal (2) G-P(sol) polarization free energy of solvation -80.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds