Wall clock time and date at job start Wed Apr 1 2020 03:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36003 * 126.28974 * 2 1 4 4 N 1.30217 * 110.17620 * 180.02562 * 3 2 1 5 5 C 1.35438 * 109.57875 * 0.02562 * 4 3 2 6 6 C 1.39891 * 133.80877 * 179.97438 * 5 4 3 7 7 C 1.36992 * 118.35740 * 179.71275 * 6 5 4 8 8 C 1.39734 * 119.59633 * 0.57593 * 7 6 5 9 9 C 1.47978 * 119.42659 * 179.70354 * 8 7 6 10 10 O 1.21539 * 119.99957 * 359.73056 * 9 8 7 11 11 N 1.34773 * 119.99850 * 179.73220 * 9 8 7 12 12 C 1.46500 * 119.99906 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47250 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.50733 * 304.99547 * 13 12 11 15 15 C 1.53299 * 109.51344 * 184.89916 * 13 12 11 16 16 N 1.47154 * 108.38248 * 187.71991 * 15 13 12 17 17 C 1.36931 * 120.97994 * 230.55368 * 16 15 13 18 18 H 1.07995 * 120.00567 * 26.58349 * 17 16 15 19 19 C 1.38814 * 119.99827 * 206.59158 * 17 16 15 20 20 N 1.31618 * 120.00115 * 17.02370 * 19 17 16 21 21 Si 1.86801 * 120.00070 * 197.02747 * 19 17 16 22 22 H 1.48499 * 109.47337 * 94.14473 * 21 19 17 23 23 H 1.48501 * 109.47278 * 214.15256 * 21 19 17 24 24 H 1.48503 * 109.46994 * 334.14617 * 21 19 17 25 25 C 1.47156 * 118.03453 * 50.53222 * 16 15 13 26 26 C 1.53289 * 108.38385 * 309.46096 * 25 16 15 27 27 O 1.42960 * 109.55523 * 65.11973 * 13 12 11 28 28 N 1.32649 * 121.14548 * 359.42690 * 8 7 6 29 29 C 1.31881 * 121.36283 * 0.27814 * 28 8 7 30 30 H 1.09002 * 109.46808 * 269.97119 * 1 2 3 31 31 H 1.08991 * 109.47369 * 29.96780 * 1 2 3 32 32 H 1.08996 * 109.46968 * 149.97295 * 1 2 3 33 33 H 1.07999 * 124.90656 * 0.04945 * 3 2 1 34 34 H 1.07999 * 120.82520 * 0.04348 * 6 5 4 35 35 H 1.08004 * 120.20462 * 180.27874 * 7 6 5 36 36 H 0.97004 * 120.00150 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47609 * 59.99827 * 12 11 9 38 38 H 1.09000 * 109.46973 * 299.99086 * 12 11 9 39 39 H 1.08998 * 109.67917 * 307.43829 * 15 13 12 40 40 H 1.08989 * 109.68340 * 67.95599 * 15 13 12 41 41 H 0.97006 * 119.99732 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.68166 * 69.18837 * 25 16 15 43 43 H 1.09008 * 109.67626 * 189.70028 * 25 16 15 44 44 H 1.09010 * 109.51146 * 172.22587 * 26 25 16 45 45 H 1.08991 * 109.51829 * 292.37840 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0962 0.0000 4 7 3.5210 0.7348 -0.0005 5 6 3.6028 -0.6171 -0.0015 6 6 4.6690 -1.5227 -0.0028 7 6 4.3846 -2.8627 0.0025 8 6 3.0527 -3.2855 -0.0031 9 6 2.7498 -4.7340 -0.0040 10 8 3.6556 -5.5443 -0.0048 11 7 1.4693 -5.1545 -0.0040 12 6 1.1694 -6.5885 -0.0043 13 6 -0.3470 -6.7924 -0.0048 14 1 -0.7866 -6.2570 0.8368 15 6 -0.6627 -8.2875 0.1183 16 7 -2.1101 -8.4733 -0.0713 17 6 -2.8511 -9.1967 0.8246 18 1 -2.5292 -9.2760 1.8524 19 6 -4.0162 -9.8284 0.4116 20 7 -4.2403 -10.0228 -0.8707 21 14 -5.2660 -10.4023 1.6757 22 1 -6.3001 -9.3528 1.8613 23 1 -5.9101 -11.6538 1.2023 24 1 -4.5813 -10.6566 2.9687 25 6 -2.7377 -7.8582 -1.2517 26 6 -2.3209 -6.3841 -1.3079 27 8 -0.8964 -6.2943 -1.2270 28 7 2.0553 -2.4111 -0.0023 29 6 2.2816 -1.1118 -0.0015 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5133 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9219 2.1186 0.0008 34 1 5.6912 -1.1741 -0.0026 35 1 5.1848 -3.5881 0.0062 36 1 0.7464 -4.5078 -0.0030 37 1 1.5980 -7.0496 0.8855 38 1 1.5977 -7.0491 -0.8945 39 1 -0.1183 -8.8417 -0.6462 40 1 -0.3726 -8.6438 1.1066 41 1 -5.0547 -10.4639 -1.1593 42 1 -2.4021 -8.3693 -2.1540 43 1 -3.8223 -7.9309 -1.1705 44 1 -2.6607 -5.9452 -2.2461 45 1 -2.7676 -5.8473 -0.4711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035506647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:15 Heat of formation + Delta-G solvation = 43.744498 kcal Electronic energy + Delta-G solvation = -29500.531739 eV Core-core repulsion = 25327.352998 eV Total energy + Delta-G solvation = -4173.178741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.75164 -40.07786 -38.65943 -37.96157 -35.08008 -34.86049 -34.30720 -32.32806 -31.59818 -30.88146 -30.09573 -27.60507 -27.56202 -25.92950 -24.69443 -23.41253 -23.14655 -21.85947 -21.25112 -20.87845 -19.72973 -18.36728 -18.10633 -17.40727 -16.90412 -16.57726 -16.09531 -15.85097 -15.31884 -15.02844 -14.96554 -14.93552 -14.39340 -14.28132 -13.87758 -13.82600 -13.63295 -13.39349 -13.19740 -13.10490 -12.95181 -12.82585 -12.67786 -12.22138 -11.58421 -11.40690 -11.22305 -11.15320 -10.89216 -10.75689 -10.44857 -10.33265 -10.27282 -10.01282 -9.71218 -9.55592 -9.13677 -9.09505 -9.07072 -8.81943 -8.57514 -6.78561 -5.87433 -3.31400 0.11310 0.88406 1.86343 2.14236 2.78811 3.05368 3.31838 3.39160 3.40728 3.58592 3.63411 3.81761 4.12975 4.21549 4.38907 4.40965 4.58555 4.68232 4.72489 4.87632 5.07387 5.11203 5.18770 5.29984 5.47176 5.48767 5.50145 5.69796 5.76952 5.78210 5.83839 6.00737 6.12284 6.17578 6.26162 6.34348 6.41918 6.45880 6.49809 6.73363 7.06956 7.23341 7.25044 7.48137 7.59306 7.68332 7.83104 8.15255 8.30265 9.08196 9.70813 10.27884 11.20709 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.002236 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.956132 B =12520.198525 C =13473.714922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.483 5.483 3 C 0.281 3.719 4 N -0.492 5.492 5 C 0.021 3.979 6 C -0.027 4.027 7 C -0.125 4.125 8 C 0.124 3.876 9 C 0.571 3.429 10 O -0.533 6.533 11 N -0.698 5.698 12 C 0.128 3.872 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.256 4.256 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.389 6.389 28 N -0.450 5.450 29 C 0.234 3.766 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.186 22.950 1.196 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.175 5.175 3 C -0.005 4.005 4 N -0.211 5.211 5 C -0.100 4.100 6 C -0.055 4.055 7 C -0.148 4.148 8 C -0.025 4.025 9 C 0.355 3.645 10 O -0.409 6.409 11 N -0.348 5.348 12 C 0.004 3.996 13 C 0.005 3.995 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.014 3.986 26 C -0.038 4.038 27 O -0.308 6.308 28 N -0.166 5.166 29 C -0.003 4.003 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.240 0.760 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.248 0.752 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.415 22.554 0.983 25.298 hybrid contribution -1.403 -0.215 0.707 1.586 sum 10.012 22.340 1.690 24.539 Atomic orbital electron populations 1.22112 0.74765 1.05345 1.04120 1.45100 1.07997 1.04415 1.60037 1.25536 0.84924 0.93204 0.96822 1.70455 1.18200 1.10500 1.21987 1.19871 0.93318 0.91495 1.05361 1.20461 0.98487 0.90648 0.95882 1.21582 0.97165 0.96092 1.00005 1.20961 0.89244 0.92683 0.99647 1.17686 0.83415 0.86043 0.77398 1.90805 1.45681 1.53871 1.50577 1.45824 1.07405 1.09161 1.72403 1.21523 0.94582 0.80259 1.03240 1.22805 0.91153 0.97827 0.87704 0.92335 1.21445 0.87546 0.91556 0.99995 1.44066 1.01222 1.59619 1.26855 1.19213 1.04341 1.24955 0.89977 0.91297 1.25060 1.00556 0.98056 0.95968 1.70042 1.26357 1.44862 1.13362 0.86224 0.81546 0.77874 0.80824 1.21427 1.21665 1.20307 1.21438 1.00058 0.87776 0.89348 1.23315 0.80209 1.00107 1.00127 1.87799 1.21833 1.83490 1.37700 1.66161 1.36872 0.99933 1.13590 1.18832 0.89271 0.87611 1.04554 0.90245 0.89005 0.88804 0.75990 0.83308 0.82376 0.75169 0.89734 0.90262 0.95126 0.91702 0.93494 0.95319 0.88868 0.90095 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.19 59.85 0.67 1.03 16 2 N -0.48 -3.89 3.20 -124.98 -0.40 -4.29 16 3 C 0.28 1.91 12.49 -89.73 -1.12 0.79 16 4 N -0.49 -5.05 11.27 -11.93 -0.13 -5.19 16 5 C 0.02 0.24 7.25 -84.58 -0.61 -0.37 16 6 C -0.03 -0.27 10.16 -39.42 -0.40 -0.67 16 7 C -0.12 -1.35 9.55 -39.47 -0.38 -1.73 16 8 C 0.12 1.59 6.74 -82.96 -0.56 1.03 16 9 C 0.57 8.32 7.80 -12.27 -0.10 8.23 16 10 O -0.53 -8.93 16.29 5.33 0.09 -8.84 16 11 N -0.70 -9.92 5.49 -61.21 -0.34 -10.26 16 12 C 0.13 1.93 5.35 -4.04 -0.02 1.91 16 13 C 0.07 1.13 2.81 -26.58 -0.07 1.05 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.12 2.51 6.02 -3.53 -0.02 2.49 16 16 N -0.59 -14.68 3.05 -171.83 -0.52 -15.21 16 17 C -0.26 -6.87 9.64 -15.06 -0.15 -7.02 16 18 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 19 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 20 N -0.90 -25.74 11.18 55.49 0.62 -25.12 16 21 Si 0.91 21.24 29.59 -169.99 -5.03 16.21 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.14 3.28 5.44 -3.53 -0.02 3.26 16 26 C 0.04 0.76 6.98 37.31 0.26 1.02 16 27 O -0.39 -7.27 10.34 -35.23 -0.36 -7.63 16 28 N -0.45 -5.65 9.54 -8.82 -0.08 -5.74 16 29 C 0.23 2.69 8.01 -155.74 -1.25 1.44 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.22 0.34 8.06 -52.49 -0.42 -0.08 16 34 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.16 1.51 7.61 -52.48 -0.40 1.11 16 36 H 0.41 5.62 7.78 -40.82 -0.32 5.30 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.26 7.96 -51.94 -0.41 0.85 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.40 6.17 -51.92 -0.32 2.08 16 44 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -34.58 378.89 -10.38 -44.96 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.07 Total: 2.96 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -3.85 Total: 12.45 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.86 Total: -65.81 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.28 Total: -16.48 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.58 -10.38 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035506647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.705 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds