Wall clock time and date at job start Wed Apr 1 2020 03:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36003 * 126.28974 * 2 1 4 4 N 1.30217 * 110.17620 * 180.02562 * 3 2 1 5 5 C 1.35438 * 109.57875 * 0.02562 * 4 3 2 6 6 C 1.39891 * 133.80877 * 179.97438 * 5 4 3 7 7 C 1.36992 * 118.35740 * 179.71275 * 6 5 4 8 8 C 1.39734 * 119.59633 * 0.57593 * 7 6 5 9 9 C 1.47978 * 119.42659 * 179.70354 * 8 7 6 10 10 O 1.21539 * 119.99957 * 359.73056 * 9 8 7 11 11 N 1.34773 * 119.99850 * 179.73220 * 9 8 7 12 12 C 1.46500 * 119.99906 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47250 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.50733 * 304.99547 * 13 12 11 15 15 C 1.53299 * 109.51344 * 184.89916 * 13 12 11 16 16 N 1.47154 * 108.38248 * 187.71991 * 15 13 12 17 17 C 1.36931 * 120.97994 * 230.55368 * 16 15 13 18 18 H 1.07995 * 120.00567 * 26.58349 * 17 16 15 19 19 C 1.38814 * 119.99827 * 206.59158 * 17 16 15 20 20 N 1.31618 * 120.00115 * 17.02370 * 19 17 16 21 21 Si 1.86801 * 120.00070 * 197.02747 * 19 17 16 22 22 H 1.48499 * 109.47337 * 94.14473 * 21 19 17 23 23 H 1.48501 * 109.47278 * 214.15256 * 21 19 17 24 24 H 1.48503 * 109.46994 * 334.14617 * 21 19 17 25 25 C 1.47156 * 118.03453 * 50.53222 * 16 15 13 26 26 C 1.53289 * 108.38385 * 309.46096 * 25 16 15 27 27 O 1.42960 * 109.55523 * 65.11973 * 13 12 11 28 28 N 1.32649 * 121.14548 * 359.42690 * 8 7 6 29 29 C 1.31881 * 121.36283 * 0.27814 * 28 8 7 30 30 H 1.09002 * 109.46808 * 269.97119 * 1 2 3 31 31 H 1.08991 * 109.47369 * 29.96780 * 1 2 3 32 32 H 1.08996 * 109.46968 * 149.97295 * 1 2 3 33 33 H 1.07999 * 124.90656 * 0.04945 * 3 2 1 34 34 H 1.07999 * 120.82520 * 0.04348 * 6 5 4 35 35 H 1.08004 * 120.20462 * 180.27874 * 7 6 5 36 36 H 0.97004 * 120.00150 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47609 * 59.99827 * 12 11 9 38 38 H 1.09000 * 109.46973 * 299.99086 * 12 11 9 39 39 H 1.08998 * 109.67917 * 307.43829 * 15 13 12 40 40 H 1.08989 * 109.68340 * 67.95599 * 15 13 12 41 41 H 0.97006 * 119.99732 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.68166 * 69.18837 * 25 16 15 43 43 H 1.09008 * 109.67626 * 189.70028 * 25 16 15 44 44 H 1.09010 * 109.51146 * 172.22587 * 26 25 16 45 45 H 1.08991 * 109.51829 * 292.37840 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0962 0.0000 4 7 3.5210 0.7348 -0.0005 5 6 3.6028 -0.6171 -0.0015 6 6 4.6690 -1.5227 -0.0028 7 6 4.3846 -2.8627 0.0025 8 6 3.0527 -3.2855 -0.0031 9 6 2.7498 -4.7340 -0.0040 10 8 3.6556 -5.5443 -0.0048 11 7 1.4693 -5.1545 -0.0040 12 6 1.1694 -6.5885 -0.0043 13 6 -0.3470 -6.7924 -0.0048 14 1 -0.7866 -6.2570 0.8368 15 6 -0.6627 -8.2875 0.1183 16 7 -2.1101 -8.4733 -0.0713 17 6 -2.8511 -9.1967 0.8246 18 1 -2.5292 -9.2760 1.8524 19 6 -4.0162 -9.8284 0.4116 20 7 -4.2403 -10.0228 -0.8707 21 14 -5.2660 -10.4023 1.6757 22 1 -6.3001 -9.3528 1.8613 23 1 -5.9101 -11.6538 1.2023 24 1 -4.5813 -10.6566 2.9687 25 6 -2.7377 -7.8582 -1.2517 26 6 -2.3209 -6.3841 -1.3079 27 8 -0.8964 -6.2943 -1.2270 28 7 2.0553 -2.4111 -0.0023 29 6 2.2816 -1.1118 -0.0015 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5133 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9219 2.1186 0.0008 34 1 5.6912 -1.1741 -0.0026 35 1 5.1848 -3.5881 0.0062 36 1 0.7464 -4.5078 -0.0030 37 1 1.5980 -7.0496 0.8855 38 1 1.5977 -7.0491 -0.8945 39 1 -0.1183 -8.8417 -0.6462 40 1 -0.3726 -8.6438 1.1066 41 1 -5.0547 -10.4639 -1.1593 42 1 -2.4021 -8.3693 -2.1540 43 1 -3.8223 -7.9309 -1.1705 44 1 -2.6607 -5.9452 -2.2461 45 1 -2.7676 -5.8473 -0.4711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035506647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:14 Heat of formation + Delta-G solvation = 20.464553 kcal Electronic energy + Delta-G solvation = -29501.541234 eV Core-core repulsion = 25327.352998 eV Total energy + Delta-G solvation = -4174.188235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.43900 -41.16011 -40.11999 -38.94614 -36.55124 -35.90022 -35.53824 -33.43081 -33.03312 -32.40464 -31.08116 -29.23454 -28.07347 -27.39735 -25.73355 -24.96351 -24.21045 -23.30495 -22.01892 -21.89634 -21.34884 -19.32274 -18.91813 -18.83412 -18.10620 -17.56508 -17.23234 -17.09991 -16.86128 -16.24288 -16.16810 -15.94721 -15.69150 -15.50578 -15.27763 -15.02012 -14.69409 -14.56560 -14.46606 -14.27686 -13.93345 -13.80730 -13.48098 -13.26916 -13.22646 -13.02031 -12.71022 -12.54113 -12.19233 -12.15433 -12.07777 -11.89186 -11.87926 -11.48082 -11.29885 -10.81210 -10.56773 -10.40546 -10.23359 -9.83047 -9.63410 -8.76747 -7.92311 -5.39999 -0.68873 0.09681 1.26880 1.36478 1.46481 1.47245 1.57002 1.91274 1.97046 2.47028 2.73222 2.76645 2.84748 3.21087 3.22744 3.46872 3.48371 3.72197 3.87940 3.95103 4.05571 4.11627 4.20567 4.24869 4.43241 4.45295 4.47953 4.51031 4.59606 4.70580 4.74010 4.75465 4.80718 4.87846 4.95687 5.04719 5.10717 5.22523 5.27171 5.42669 5.54117 5.60123 5.86694 6.24214 6.29065 6.32507 6.59367 6.60496 7.03380 7.05027 7.72870 8.26903 9.13888 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.002236 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.956132 B =12520.198525 C =13473.714922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.484 5.484 3 C 0.305 3.695 4 N -0.527 5.527 5 C 0.011 3.989 6 C -0.029 4.029 7 C -0.123 4.123 8 C 0.098 3.902 9 C 0.573 3.427 10 O -0.560 6.560 11 N -0.694 5.694 12 C 0.138 3.862 13 C 0.079 3.921 14 H 0.067 0.933 15 C 0.117 3.883 16 N -0.613 5.613 17 C -0.266 4.266 18 H 0.073 0.927 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.972 3.028 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.267 1.267 25 C 0.144 3.856 26 C 0.054 3.946 27 O -0.391 6.391 28 N -0.458 5.458 29 C 0.209 3.791 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.277 0.723 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.416 0.584 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.252 0.748 42 H -0.001 1.001 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.163 25.934 2.170 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.175 5.175 3 C 0.020 3.980 4 N -0.247 5.247 5 C -0.111 4.111 6 C -0.056 4.056 7 C -0.147 4.147 8 C -0.050 4.050 9 C 0.359 3.641 10 O -0.439 6.439 11 N -0.344 5.344 12 C 0.014 3.986 13 C 0.020 3.980 14 H 0.085 0.915 15 C -0.009 4.009 16 N -0.337 5.337 17 C -0.396 4.396 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.800 3.200 22 H -0.209 1.209 23 H -0.223 1.223 24 H -0.192 1.192 25 C 0.018 3.982 26 C -0.023 4.023 27 O -0.310 6.310 28 N -0.174 5.174 29 C -0.029 4.029 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.096 0.904 33 H 0.292 0.708 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.253 0.747 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.389 25.562 1.968 28.054 hybrid contribution -1.387 -1.015 0.390 1.762 sum 10.002 24.548 2.357 26.612 Atomic orbital electron populations 1.22367 0.72801 1.06453 1.05056 1.45447 1.09189 1.03569 1.59317 1.26657 0.83840 0.94652 0.92881 1.70487 1.20212 1.09720 1.24250 1.20240 0.93684 0.92395 1.04761 1.20726 0.99574 0.90088 0.95183 1.21657 0.96541 0.96771 0.99752 1.20725 0.90230 0.91717 1.02314 1.17924 0.82924 0.86825 0.76459 1.90779 1.46305 1.54864 1.51928 1.45726 1.07652 1.08636 1.72434 1.21340 0.92799 0.81093 1.03407 1.22651 0.92475 0.95376 0.87541 0.91494 1.21595 0.85314 0.93831 1.00156 1.44344 1.02892 1.59779 1.26712 1.19559 1.04747 1.24650 0.90600 0.90928 1.25844 1.02362 0.98690 0.97676 1.70198 1.26676 1.46081 1.15189 0.85188 0.79070 0.76969 0.78816 1.20943 1.22277 1.19188 1.21302 0.98463 0.90531 0.87903 1.23155 0.80387 0.96745 1.02029 1.87814 1.21584 1.83186 1.38420 1.66051 1.36964 1.00640 1.13764 1.19179 0.90478 0.87888 1.05367 0.89375 0.85241 0.90387 0.70805 0.80914 0.81660 0.74724 0.88561 0.91214 0.96187 0.90742 0.93926 0.98266 0.91448 0.87423 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.19 127.77 1.43 1.90 16 2 N -0.48 -6.56 3.20 -549.31 -1.76 -8.31 16 3 C 0.31 3.09 12.49 180.04 2.25 5.34 16 4 N -0.53 -9.63 11.27 -191.65 -2.16 -11.79 16 5 C 0.01 0.24 7.25 39.69 0.29 0.53 16 6 C -0.03 -0.54 10.16 22.38 0.23 -0.31 16 7 C -0.12 -2.64 9.55 22.34 0.21 -2.43 16 8 C 0.10 2.51 6.74 41.97 0.28 2.80 16 9 C 0.57 16.75 7.80 86.83 0.68 17.43 16 10 O -0.56 -18.93 16.29 -3.84 -0.06 -18.99 16 11 N -0.69 -19.44 5.49 -465.85 -2.56 -22.00 16 12 C 0.14 4.09 5.35 86.38 0.46 4.55 16 13 C 0.08 2.68 2.81 30.70 0.09 2.77 16 14 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 15 C 0.12 4.83 6.02 86.35 0.52 5.35 16 16 N -0.61 -30.64 3.05 -697.54 -2.13 -32.76 16 17 C -0.27 -14.37 9.64 84.03 0.81 -13.56 16 18 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 19 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16 20 N -0.94 -54.74 11.18 21.65 0.24 -54.49 16 21 Si 0.97 43.92 29.59 68.60 2.03 45.95 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 C 0.14 6.90 5.44 86.35 0.47 7.37 16 26 C 0.05 2.01 6.98 72.08 0.50 2.52 16 27 O -0.39 -14.23 10.34 -148.98 -1.54 -15.77 16 28 N -0.46 -11.32 9.54 -181.83 -1.73 -13.06 16 29 C 0.21 4.55 8.01 134.06 1.07 5.63 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.28 -0.65 8.06 -2.91 -0.02 -0.67 16 34 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.17 3.15 7.61 -2.91 -0.02 3.13 16 36 H 0.42 11.03 7.78 -92.71 -0.72 10.31 16 37 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 2.87 7.96 -2.39 -0.02 2.86 16 41 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.07 3.57 6.17 -2.38 -0.01 3.55 16 44 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -76.81 378.89 0.35 -76.46 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.31 Total: 17.21 kcal Atomic # 6 Polarization: 27.84 SS G_CDS: 9.71 Total: 37.55 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -10.10 Total: -142.41 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.60 Total: -34.76 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -76.81 0.35 -76.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035506647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.924 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds