Wall clock time and date at job start Wed Apr 1 2020 03:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35989 * 126.29620 * 2 1 4 4 N 1.30220 * 110.18266 * 179.97438 * 3 2 1 5 5 C 1.35443 * 109.57526 * 0.02562 * 4 3 2 6 6 C 1.39888 * 133.81160 * 179.97438 * 5 4 3 7 7 C 1.36986 * 118.35989 * 179.97438 * 6 5 4 8 8 C 1.39737 * 119.60194 * 0.02562 * 7 6 5 9 9 C 1.47966 * 119.43285 * 179.97438 * 8 7 6 10 10 O 1.21545 * 119.99785 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00194 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46847 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.50946 * 60.10345 * 13 12 11 15 15 C 1.53717 * 109.48148 * 180.36236 * 13 12 11 16 16 N 1.47154 * 108.16009 * 172.39943 * 15 13 12 17 17 C 1.36931 * 120.97887 * 129.43492 * 16 15 13 18 18 H 1.08005 * 120.00440 * 333.49504 * 17 16 15 19 19 C 1.38812 * 119.99878 * 153.49544 * 17 16 15 20 20 N 1.31622 * 120.00058 * 343.08256 * 19 17 16 21 21 Si 1.86803 * 119.99905 * 162.80886 * 19 17 16 22 22 H 1.48497 * 109.46927 * 90.00263 * 21 19 17 23 23 H 1.48506 * 109.46836 * 209.99902 * 21 19 17 24 24 H 1.48490 * 109.47352 * 329.99799 * 21 19 17 25 25 C 1.47149 * 118.03579 * 309.15864 * 16 15 13 26 26 C 1.53296 * 108.38694 * 50.78628 * 25 16 15 27 27 O 1.42963 * 109.22250 * 307.69880 * 26 25 16 28 28 N 1.32656 * 121.13538 * 0.25250 * 8 7 6 29 29 C 1.31877 * 121.37029 * 359.47794 * 28 8 7 30 30 H 1.09000 * 109.46546 * 90.02269 * 1 2 3 31 31 H 1.08993 * 109.47415 * 210.02382 * 1 2 3 32 32 H 1.08997 * 109.46755 * 330.02518 * 1 2 3 33 33 H 1.08003 * 124.91216 * 359.94490 * 3 2 1 34 34 H 1.07997 * 120.82325 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.20154 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99690 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46958 * 60.00489 * 12 11 9 38 38 H 1.08997 * 109.46760 * 300.00352 * 12 11 9 39 39 H 1.08999 * 109.83737 * 52.72102 * 15 13 12 40 40 H 1.09001 * 109.74797 * 292.02541 * 15 13 12 41 41 H 0.96999 * 120.00005 * 180.02562 * 20 19 17 42 42 H 1.08993 * 109.68413 * 170.50997 * 25 16 15 43 43 H 1.08997 * 109.68203 * 291.02940 * 25 16 15 44 44 H 1.09004 * 109.50741 * 67.61742 * 26 25 16 45 45 H 1.08993 * 109.51437 * 187.72356 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0960 0.0000 4 7 3.5210 0.7346 0.0005 5 6 3.6028 -0.6173 0.0004 6 6 4.6689 -1.5231 0.0003 7 6 4.3843 -2.8630 0.0006 8 6 3.0525 -3.2858 0.0005 9 6 2.7493 -4.7341 0.0003 10 8 3.6552 -5.5446 -0.0002 11 7 1.4689 -5.1547 0.0007 12 6 1.1688 -6.5886 -0.0001 13 6 -0.3476 -6.7923 -0.0001 14 1 -0.7766 -6.3327 -0.8904 15 6 -0.6628 -8.2968 0.0083 16 7 -2.1135 -8.4604 0.1931 17 6 -2.8448 -9.2602 -0.6438 18 1 -2.5080 -9.4347 -1.6551 19 6 -4.0191 -9.8469 -0.1925 20 7 -4.2643 -9.9201 1.0986 21 14 -5.2550 -10.5256 -1.4179 22 1 -4.9434 -11.9503 -1.6976 23 1 -6.6234 -10.4204 -0.8505 24 1 -5.1809 -9.7457 -2.6793 25 6 -2.7539 -7.7440 1.3075 26 6 -2.3359 -6.2707 1.2392 27 8 -0.9105 -6.1887 1.1673 28 7 2.0551 -2.4111 -0.0049 29 6 2.2814 -1.1119 -0.0002 30 1 -0.3632 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.9221 2.1185 -0.0009 34 1 5.6911 -1.1745 0.0000 35 1 5.1845 -3.5884 0.0002 36 1 0.7460 -4.5079 0.0007 37 1 1.5978 -7.0500 0.8894 38 1 1.5970 -7.0489 -0.8905 39 1 -0.1314 -8.7815 0.8273 40 1 -0.3610 -8.7415 -0.9400 41 1 -5.0847 -10.3304 1.4140 42 1 -3.8375 -7.8226 1.2201 43 1 -2.4300 -8.1744 2.2551 44 1 -2.7722 -5.8093 0.3532 45 1 -2.6867 -5.7510 2.1306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035506649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:17 Heat of formation + Delta-G solvation = 44.052319 kcal Electronic energy + Delta-G solvation = -29520.318421 eV Core-core repulsion = 25347.153028 eV Total energy + Delta-G solvation = -4173.165393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.74611 -40.06986 -38.64772 -37.95215 -35.07293 -34.85629 -34.29594 -32.32153 -31.58774 -30.87403 -30.08435 -27.60289 -27.56174 -25.91962 -24.69109 -23.41088 -23.13888 -21.85038 -21.24517 -20.85232 -19.73647 -18.36384 -18.10248 -17.40280 -16.90278 -16.57180 -16.10842 -15.81967 -15.31522 -15.03450 -14.95391 -14.91588 -14.40110 -14.27618 -13.86867 -13.82748 -13.62976 -13.39628 -13.19249 -13.10404 -12.95621 -12.80767 -12.67347 -12.21435 -11.57474 -11.40123 -11.21789 -11.15124 -10.87669 -10.73909 -10.44054 -10.34226 -10.30436 -10.00509 -9.71249 -9.54694 -9.13196 -9.09881 -9.05887 -8.81058 -8.56924 -6.78210 -5.87389 -3.30923 0.11876 0.88934 1.86896 2.14804 2.79385 3.06085 3.31850 3.38954 3.40923 3.59146 3.64009 3.82232 4.13390 4.21756 4.39569 4.41503 4.59104 4.68987 4.73078 4.88342 5.08075 5.12232 5.19285 5.30261 5.46611 5.48729 5.50697 5.70098 5.77419 5.78074 5.83943 6.01377 6.12731 6.18121 6.26904 6.34548 6.42459 6.46208 6.50235 6.73341 7.07457 7.24135 7.25542 7.48680 7.60712 7.68011 7.83038 8.16382 8.30382 9.08322 9.71085 10.28017 11.20731 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.002238 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.261630 B =12509.013877 C =13498.946226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.483 5.483 3 C 0.281 3.719 4 N -0.492 5.492 5 C 0.021 3.979 6 C -0.028 4.028 7 C -0.125 4.125 8 C 0.124 3.876 9 C 0.570 3.430 10 O -0.534 6.534 11 N -0.697 5.697 12 C 0.128 3.872 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.389 6.389 28 N -0.450 5.450 29 C 0.234 3.766 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.224 0.776 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.413 0.587 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.028 0.972 44 H 0.040 0.960 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.172 22.788 -1.841 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.175 5.175 3 C -0.005 4.005 4 N -0.212 5.212 5 C -0.101 4.101 6 C -0.055 4.055 7 C -0.148 4.148 8 C -0.025 4.025 9 C 0.354 3.646 10 O -0.410 6.410 11 N -0.347 5.347 12 C 0.004 3.996 13 C 0.005 3.995 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.014 3.986 26 C -0.037 4.037 27 O -0.308 6.308 28 N -0.165 5.165 29 C -0.003 4.003 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.240 0.760 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.249 0.751 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.384 22.431 -1.632 25.207 hybrid contribution -1.379 -0.308 -0.666 1.562 sum 10.004 22.123 -2.298 24.388 Atomic orbital electron populations 1.22112 0.74763 1.05353 1.04113 1.45097 1.07999 1.04413 1.60029 1.25532 0.84928 0.93208 0.96826 1.70460 1.18197 1.10496 1.21999 1.19873 0.93320 0.91497 1.05360 1.20457 0.98484 0.90648 0.95904 1.21580 0.97166 0.96090 1.00009 1.20960 0.89238 0.92684 0.99645 1.17688 0.83426 0.86045 0.77416 1.90805 1.45697 1.53866 1.50638 1.45798 1.07402 1.09174 1.72316 1.21536 0.94553 0.80327 1.03175 1.22898 0.90980 0.96861 0.88777 0.92291 1.21533 0.87500 0.91533 0.99980 1.44082 1.00942 1.52853 1.33886 1.19184 1.04021 1.22831 0.92432 0.91341 1.25056 1.00491 0.98426 0.95692 1.70033 1.25915 1.46901 1.11843 0.86261 0.80784 0.78934 0.80583 1.21261 1.21482 1.20457 1.21441 0.99997 0.86891 0.90301 1.23313 0.80160 1.00169 1.00093 1.87786 1.21585 1.78667 1.42805 1.66161 1.36878 0.99927 1.13562 1.18835 0.89265 0.87612 1.04555 0.90254 0.88790 0.89007 0.75994 0.83314 0.82385 0.75081 0.90328 0.89805 0.95109 0.91699 0.93484 0.88792 0.95361 0.94142 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.19 59.85 0.67 1.04 16 2 N -0.48 -3.91 3.20 -124.98 -0.40 -4.31 16 3 C 0.28 1.92 12.49 -89.74 -1.12 0.80 16 4 N -0.49 -5.07 11.27 -11.93 -0.13 -5.21 16 5 C 0.02 0.24 7.25 -84.57 -0.61 -0.37 16 6 C -0.03 -0.27 10.16 -39.42 -0.40 -0.67 16 7 C -0.12 -1.36 9.55 -39.48 -0.38 -1.73 16 8 C 0.12 1.60 6.74 -82.97 -0.56 1.04 16 9 C 0.57 8.35 7.80 -12.28 -0.10 8.26 16 10 O -0.53 -8.96 16.29 5.33 0.09 -8.87 16 11 N -0.70 -9.97 5.44 -61.21 -0.33 -10.30 16 12 C 0.13 1.94 5.37 -4.04 -0.02 1.91 16 13 C 0.06 1.12 2.88 -26.36 -0.08 1.05 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.12 2.51 6.05 -3.31 -0.02 2.49 16 16 N -0.59 -14.68 3.04 -171.57 -0.52 -15.21 16 17 C -0.26 -6.87 9.65 -15.06 -0.15 -7.01 16 18 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 19 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 20 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 21 Si 0.91 21.21 29.59 -169.99 -5.03 16.18 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 C 0.14 3.28 5.44 -3.53 -0.02 3.26 16 26 C 0.04 0.76 6.99 37.31 0.26 1.03 16 27 O -0.39 -7.24 10.13 -35.23 -0.36 -7.60 16 28 N -0.45 -5.68 9.54 -8.82 -0.08 -5.77 16 29 C 0.23 2.70 8.01 -155.73 -1.25 1.45 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.22 0.35 8.06 -52.48 -0.42 -0.08 16 34 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.16 1.52 7.61 -52.49 -0.40 1.12 16 36 H 0.41 5.69 7.66 -40.82 -0.31 5.38 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 378.57 15.07 5.71 5.71 Total: -1.00 -34.55 378.57 -10.37 -44.92 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.07 Total: 3.10 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -3.85 Total: 12.50 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.86 Total: -65.92 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.27 Total: -16.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.55 -10.37 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035506649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.968 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds