Wall clock time and date at job start Wed Apr 1 2020 03:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35989 * 126.29620 * 2 1 4 4 N 1.30220 * 110.18266 * 179.97438 * 3 2 1 5 5 C 1.35443 * 109.57526 * 0.02562 * 4 3 2 6 6 C 1.39888 * 133.81160 * 179.97438 * 5 4 3 7 7 C 1.36986 * 118.35989 * 179.97438 * 6 5 4 8 8 C 1.39737 * 119.60194 * 0.02562 * 7 6 5 9 9 C 1.47966 * 119.43285 * 179.97438 * 8 7 6 10 10 O 1.21545 * 119.99785 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00194 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46847 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.50946 * 60.10345 * 13 12 11 15 15 C 1.53717 * 109.48148 * 180.36236 * 13 12 11 16 16 N 1.47154 * 108.16009 * 172.39943 * 15 13 12 17 17 C 1.36931 * 120.97887 * 129.43492 * 16 15 13 18 18 H 1.08005 * 120.00440 * 333.49504 * 17 16 15 19 19 C 1.38812 * 119.99878 * 153.49544 * 17 16 15 20 20 N 1.31622 * 120.00058 * 343.08256 * 19 17 16 21 21 Si 1.86803 * 119.99905 * 162.80886 * 19 17 16 22 22 H 1.48497 * 109.46927 * 90.00263 * 21 19 17 23 23 H 1.48506 * 109.46836 * 209.99902 * 21 19 17 24 24 H 1.48490 * 109.47352 * 329.99799 * 21 19 17 25 25 C 1.47149 * 118.03579 * 309.15864 * 16 15 13 26 26 C 1.53296 * 108.38694 * 50.78628 * 25 16 15 27 27 O 1.42963 * 109.22250 * 307.69880 * 26 25 16 28 28 N 1.32656 * 121.13538 * 0.25250 * 8 7 6 29 29 C 1.31877 * 121.37029 * 359.47794 * 28 8 7 30 30 H 1.09000 * 109.46546 * 90.02269 * 1 2 3 31 31 H 1.08993 * 109.47415 * 210.02382 * 1 2 3 32 32 H 1.08997 * 109.46755 * 330.02518 * 1 2 3 33 33 H 1.08003 * 124.91216 * 359.94490 * 3 2 1 34 34 H 1.07997 * 120.82325 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.20154 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99690 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.46958 * 60.00489 * 12 11 9 38 38 H 1.08997 * 109.46760 * 300.00352 * 12 11 9 39 39 H 1.08999 * 109.83737 * 52.72102 * 15 13 12 40 40 H 1.09001 * 109.74797 * 292.02541 * 15 13 12 41 41 H 0.96999 * 120.00005 * 180.02562 * 20 19 17 42 42 H 1.08993 * 109.68413 * 170.50997 * 25 16 15 43 43 H 1.08997 * 109.68203 * 291.02940 * 25 16 15 44 44 H 1.09004 * 109.50741 * 67.61742 * 26 25 16 45 45 H 1.08993 * 109.51437 * 187.72356 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0960 0.0000 4 7 3.5210 0.7346 0.0005 5 6 3.6028 -0.6173 0.0004 6 6 4.6689 -1.5231 0.0003 7 6 4.3843 -2.8630 0.0006 8 6 3.0525 -3.2858 0.0005 9 6 2.7493 -4.7341 0.0003 10 8 3.6552 -5.5446 -0.0002 11 7 1.4689 -5.1547 0.0007 12 6 1.1688 -6.5886 -0.0001 13 6 -0.3476 -6.7923 -0.0001 14 1 -0.7766 -6.3327 -0.8904 15 6 -0.6628 -8.2968 0.0083 16 7 -2.1135 -8.4604 0.1931 17 6 -2.8448 -9.2602 -0.6438 18 1 -2.5080 -9.4347 -1.6551 19 6 -4.0191 -9.8469 -0.1925 20 7 -4.2643 -9.9201 1.0986 21 14 -5.2550 -10.5256 -1.4179 22 1 -4.9434 -11.9503 -1.6976 23 1 -6.6234 -10.4204 -0.8505 24 1 -5.1809 -9.7457 -2.6793 25 6 -2.7539 -7.7440 1.3075 26 6 -2.3359 -6.2707 1.2392 27 8 -0.9105 -6.1887 1.1673 28 7 2.0551 -2.4111 -0.0049 29 6 2.2814 -1.1119 -0.0002 30 1 -0.3632 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.9221 2.1185 -0.0009 34 1 5.6911 -1.1745 0.0000 35 1 5.1845 -3.5884 0.0002 36 1 0.7460 -4.5079 0.0007 37 1 1.5978 -7.0500 0.8894 38 1 1.5970 -7.0489 -0.8905 39 1 -0.1314 -8.7815 0.8273 40 1 -0.3610 -8.7415 -0.9400 41 1 -5.0847 -10.3304 1.4140 42 1 -3.8375 -7.8226 1.2201 43 1 -2.4300 -8.1744 2.2551 44 1 -2.7722 -5.8093 0.3532 45 1 -2.6867 -5.7510 2.1306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035506649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:16 Heat of formation + Delta-G solvation = 20.869015 kcal Electronic energy + Delta-G solvation = -29521.323724 eV Core-core repulsion = 25347.153028 eV Total energy + Delta-G solvation = -4174.170697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.43714 -41.15488 -40.10559 -38.94229 -36.55374 -35.88373 -35.53346 -33.42263 -33.03129 -32.39069 -31.07570 -29.23530 -28.07195 -27.39044 -25.73484 -24.95496 -24.20787 -23.29574 -21.99097 -21.89416 -21.36300 -19.32381 -18.91654 -18.83231 -18.10495 -17.56146 -17.23506 -17.07538 -16.85712 -16.24790 -16.16397 -15.93923 -15.68883 -15.50565 -15.28179 -15.01800 -14.70269 -14.55468 -14.46258 -14.27346 -13.93149 -13.80320 -13.47880 -13.26835 -13.22006 -13.01329 -12.69348 -12.51279 -12.20622 -12.16647 -12.08717 -11.88892 -11.87799 -11.48396 -11.28919 -10.81428 -10.55749 -10.40252 -10.22417 -9.82942 -9.63145 -8.76301 -7.92148 -5.39427 -0.68686 0.09835 1.27078 1.36704 1.46249 1.47411 1.57369 1.91379 1.97366 2.47394 2.73463 2.76489 2.85688 3.21336 3.23246 3.47229 3.48900 3.72602 3.88123 3.95563 4.05183 4.11747 4.20461 4.24675 4.43416 4.45595 4.48077 4.50589 4.60837 4.71168 4.74974 4.75661 4.80904 4.88280 4.95831 5.04874 5.10867 5.22793 5.27744 5.42814 5.54511 5.60322 5.86909 6.24144 6.29705 6.32836 6.59918 6.60609 7.03935 7.05257 7.73254 8.27103 9.13989 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.002238 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.261630 B =12509.013877 C =13498.946226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.483 5.483 3 C 0.305 3.695 4 N -0.527 5.527 5 C 0.011 3.989 6 C -0.029 4.029 7 C -0.123 4.123 8 C 0.098 3.902 9 C 0.573 3.427 10 O -0.561 6.561 11 N -0.693 5.693 12 C 0.137 3.863 13 C 0.079 3.921 14 H 0.067 0.933 15 C 0.117 3.883 16 N -0.613 5.613 17 C -0.266 4.266 18 H 0.073 0.927 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.972 3.028 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.268 1.268 25 C 0.143 3.857 26 C 0.055 3.945 27 O -0.390 6.390 28 N -0.458 5.458 29 C 0.209 3.791 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.277 0.723 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.252 0.748 42 H 0.068 0.932 43 H -0.001 1.001 44 H 0.050 0.950 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.160 25.693 -2.876 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.175 5.175 3 C 0.020 3.980 4 N -0.247 5.247 5 C -0.111 4.111 6 C -0.056 4.056 7 C -0.147 4.147 8 C -0.050 4.050 9 C 0.358 3.642 10 O -0.439 6.439 11 N -0.344 5.344 12 C 0.013 3.987 13 C 0.019 3.981 14 H 0.085 0.915 15 C -0.009 4.009 16 N -0.337 5.337 17 C -0.396 4.396 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.193 1.193 25 C 0.018 3.982 26 C -0.023 4.023 27 O -0.310 6.310 28 N -0.174 5.174 29 C -0.029 4.029 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.292 0.708 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.253 0.747 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.017 0.983 44 H 0.069 0.931 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.369 25.358 -2.678 27.919 hybrid contribution -1.364 -1.084 -0.327 1.773 sum 10.005 24.274 -3.005 26.427 Atomic orbital electron populations 1.22367 0.72801 1.06451 1.05053 1.45443 1.09190 1.03566 1.59314 1.26655 0.83842 0.94657 0.92878 1.70492 1.20207 1.09711 1.24261 1.20242 0.93682 0.92399 1.04756 1.20723 0.99574 0.90085 0.95199 1.21655 0.96537 0.96774 0.99752 1.20727 0.90227 0.91724 1.02318 1.17926 0.82934 0.86829 0.76481 1.90779 1.46311 1.54854 1.51979 1.45705 1.07640 1.08670 1.72359 1.21362 0.92779 0.81130 1.03390 1.22741 0.92292 0.94334 0.88689 0.91479 1.21684 0.85269 0.93945 1.00008 1.44363 1.02621 1.52991 1.33752 1.19545 1.04436 1.22628 0.92994 0.90926 1.25843 1.02247 0.99268 0.97250 1.70191 1.26194 1.48186 1.13610 0.85222 0.78071 0.78117 0.78684 1.21221 1.21745 1.19296 1.21307 0.98431 0.89731 0.88750 1.23151 0.80346 0.96871 1.01912 1.87803 1.21326 1.78393 1.43450 1.66051 1.36978 1.00642 1.13744 1.19182 0.90479 0.87888 1.05369 0.89374 0.90398 0.85236 0.70801 0.80912 0.81662 0.74683 0.91268 0.88554 0.96195 0.90735 0.93920 0.91366 0.98328 0.93126 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.19 127.77 1.43 1.91 16 2 N -0.48 -6.60 3.20 -549.32 -1.76 -8.36 16 3 C 0.30 3.11 12.49 180.04 2.25 5.36 16 4 N -0.53 -9.67 11.27 -191.65 -2.16 -11.83 16 5 C 0.01 0.24 7.25 39.69 0.29 0.53 16 6 C -0.03 -0.55 10.16 22.38 0.23 -0.32 16 7 C -0.12 -2.65 9.55 22.34 0.21 -2.44 16 8 C 0.10 2.52 6.74 41.96 0.28 2.81 16 9 C 0.57 16.82 7.80 86.82 0.68 17.49 16 10 O -0.56 -18.98 16.29 -3.86 -0.06 -19.04 16 11 N -0.69 -19.54 5.44 -465.85 -2.53 -22.07 16 12 C 0.14 4.09 5.37 86.38 0.46 4.55 16 13 C 0.08 2.68 2.88 30.84 0.09 2.77 16 14 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.12 4.83 6.05 86.50 0.52 5.36 16 16 N -0.61 -30.64 3.04 -696.73 -2.12 -32.77 16 17 C -0.27 -14.40 9.65 84.03 0.81 -13.59 16 18 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 19 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 20 N -0.94 -54.71 11.14 21.65 0.24 -54.47 16 21 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C 0.14 6.88 5.44 86.35 0.47 7.35 16 26 C 0.05 2.02 6.99 72.08 0.50 2.53 16 27 O -0.39 -14.15 10.13 -148.98 -1.51 -15.66 16 28 N -0.46 -11.39 9.54 -181.82 -1.73 -13.13 16 29 C 0.21 4.58 8.01 134.06 1.07 5.65 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.28 -0.63 8.06 -2.91 -0.02 -0.65 16 34 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.17 3.16 7.61 -2.91 -0.02 3.14 16 36 H 0.42 11.19 7.66 -92.71 -0.71 10.48 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 2.88 7.96 -2.39 -0.02 2.86 16 41 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.07 3.61 6.14 -2.39 -0.01 3.60 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -76.77 378.57 0.44 -76.34 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.32 Total: 17.48 kcal Atomic # 6 Polarization: 27.88 SS G_CDS: 9.72 Total: 37.60 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -10.06 Total: -142.63 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.57 Total: -34.71 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -76.77 0.44 -76.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035506649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.206 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds