Wall clock time and date at job start Wed Apr 1 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39800 * 125.33784 * 2 1 4 4 C 1.30202 * 110.12825 * 179.97438 * 3 2 1 5 5 C 1.45971 * 107.58878 * 359.76235 * 4 3 2 6 6 C 1.39653 * 134.11577 * 179.45143 * 5 4 3 7 7 C 1.39511 * 117.94840 * 180.46507 * 6 5 4 8 8 C 1.47688 * 120.41040 * 180.25410 * 7 6 5 9 9 O 1.21577 * 119.99594 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00234 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00100 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47041 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.51030 * 304.99590 * 12 11 10 14 14 C 1.53297 * 109.51375 * 184.89599 * 12 11 10 15 15 N 1.47149 * 108.38765 * 187.77163 * 14 12 11 16 16 C 1.36929 * 120.98271 * 230.55611 * 15 14 12 17 17 H 1.08007 * 120.00403 * 26.23961 * 16 15 14 18 18 C 1.38809 * 120.00097 * 206.23881 * 16 15 14 19 19 N 1.31618 * 120.00023 * 16.90788 * 18 16 15 20 20 Si 1.86806 * 120.00262 * 196.90811 * 18 16 15 21 21 H 1.48493 * 109.46924 * 90.00063 * 20 18 16 22 22 H 1.48498 * 109.46922 * 210.00252 * 20 18 16 23 23 H 1.48504 * 109.46968 * 330.00063 * 20 18 16 24 24 C 1.47149 * 118.03249 * 50.53538 * 15 14 12 25 25 C 1.53302 * 108.38486 * 309.46407 * 24 15 14 26 26 O 1.42948 * 109.26457 * 52.28326 * 25 24 15 27 27 C 1.40184 * 119.17962 * 0.28171 * 7 6 5 28 28 N 1.31181 * 121.37657 * 0.02562 * 27 7 6 29 29 C 1.32933 * 121.84553 * 359.97438 * 28 27 7 30 30 H 1.09002 * 109.46941 * 270.03802 * 1 2 3 31 31 H 1.08997 * 109.46928 * 30.03928 * 1 2 3 32 32 H 1.08990 * 109.46980 * 150.03901 * 1 2 3 33 33 H 1.08008 * 126.20196 * 180.02562 * 4 3 2 34 34 H 1.07996 * 121.02893 * 0.74332 * 6 5 4 35 35 H 0.96997 * 119.99556 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.46716 * 299.99488 * 11 10 8 37 37 H 1.08998 * 109.47251 * 59.99369 * 11 10 8 38 38 H 1.09002 * 109.68118 * 307.50066 * 14 12 11 39 39 H 1.09004 * 109.68216 * 68.00888 * 14 12 11 40 40 H 0.97004 * 120.00419 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.68402 * 69.18760 * 24 15 14 42 42 H 1.08998 * 109.68101 * 189.70470 * 24 15 14 43 43 H 1.09000 * 109.50806 * 172.22936 * 25 24 15 44 44 H 1.09002 * 109.51160 * 292.37902 * 25 24 15 45 45 H 1.07998 * 119.30723 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7988 0.0005 5 6 3.5907 -0.6596 0.0067 6 6 4.6327 -1.5893 0.0003 7 6 4.3002 -2.9442 0.0001 8 6 5.3589 -3.9739 -0.0009 9 8 6.5288 -3.6428 -0.0019 10 7 5.0284 -5.2804 -0.0017 11 6 6.0786 -6.3017 -0.0021 12 6 5.4386 -7.6914 -0.0023 13 1 4.7512 -7.7758 0.8394 14 6 6.5320 -8.7588 0.1206 15 7 5.9140 -10.0806 -0.0698 16 6 6.1277 -11.0943 0.8255 17 1 6.3722 -10.8654 1.8523 18 6 6.0302 -12.4162 0.4135 19 7 6.0657 -12.7102 -0.8689 20 14 5.8487 -13.7781 1.6792 21 1 4.4076 -14.0154 1.9477 22 1 6.4669 -15.0237 1.1581 23 1 6.5274 -13.3778 2.9379 24 6 5.0590 -10.2805 -1.2507 25 6 4.0373 -9.1390 -1.3068 26 8 4.7233 -7.8876 -1.2245 27 6 2.9486 -3.3162 0.0001 28 7 1.9929 -2.4177 -0.0001 29 6 2.2554 -1.1145 0.0002 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8903 -0.5132 33 1 4.3743 1.4725 0.0011 34 1 5.6642 -1.2694 0.0002 35 1 4.0950 -5.5445 -0.0012 36 1 6.6974 -6.1862 -0.8920 37 1 6.6973 -6.1871 0.8880 38 1 7.2921 -8.5954 -0.6434 39 1 6.9880 -8.7052 1.1093 40 1 5.9979 -13.6340 -1.1569 41 1 5.6707 -10.2703 -2.1528 42 1 4.5394 -11.2353 -1.1703 43 1 3.4851 -9.1905 -2.2451 44 1 3.3443 -9.2293 -0.4702 45 1 2.6888 -4.3645 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035557416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:00 Heat of formation + Delta-G solvation = 32.555815 kcal Electronic energy + Delta-G solvation = -29093.076145 eV Core-core repulsion = 24919.412226 eV Total energy + Delta-G solvation = -4173.663919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.71115 -40.97458 -40.00606 -38.82018 -36.51051 -35.80810 -34.91159 -33.41065 -32.90545 -32.39909 -31.28151 -29.21897 -28.03334 -27.07097 -25.13523 -24.99157 -24.63277 -23.22678 -22.01665 -21.90511 -21.24342 -19.16197 -18.83502 -18.75940 -17.88679 -17.44100 -16.96776 -16.91250 -16.88279 -16.39789 -16.13509 -15.93743 -15.50306 -15.39716 -15.06052 -14.99332 -14.65227 -14.55312 -14.42331 -14.32993 -14.14785 -13.66580 -13.44961 -13.29998 -13.19194 -12.98169 -12.67940 -12.50476 -12.25204 -12.13910 -12.05437 -11.84864 -11.61356 -11.41536 -11.23223 -10.77278 -10.60297 -10.51447 -10.25312 -10.13479 -9.42012 -8.73775 -7.89774 -5.36990 -0.36246 -0.33030 1.05962 1.34656 1.48229 1.49128 1.58137 1.77427 2.04754 2.49292 2.70817 2.81465 3.01227 3.17569 3.25131 3.48988 3.50942 3.63097 3.74227 3.94323 4.01949 4.11563 4.25840 4.29466 4.37614 4.40731 4.47685 4.52255 4.57042 4.65033 4.66496 4.75901 4.79939 4.90863 4.94632 5.09728 5.11014 5.27742 5.32069 5.36878 5.57947 5.63625 5.64164 6.27153 6.28014 6.35623 6.49052 6.68770 7.07833 7.15340 7.76327 8.29491 9.16065 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.001906 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.645150 B =14686.010630 C =15193.151504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.263 5.263 4 C 0.110 3.890 5 C -0.251 4.251 6 C 0.079 3.921 7 C -0.242 4.242 8 C 0.574 3.426 9 O -0.576 6.576 10 N -0.706 5.706 11 C 0.142 3.858 12 C 0.078 3.922 13 H 0.073 0.927 14 C 0.116 3.884 15 N -0.613 5.613 16 C -0.263 4.263 17 H 0.074 0.926 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.283 1.283 22 H -0.298 1.298 23 H -0.268 1.268 24 C 0.142 3.858 25 C 0.055 3.945 26 O -0.389 6.389 27 C 0.212 3.788 28 N -0.519 5.519 29 C 0.310 3.690 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.167 0.833 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.251 0.749 41 H -0.002 1.002 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.435 26.087 2.187 28.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.190 5.190 3 N -0.074 5.074 4 C -0.088 4.088 5 C -0.261 4.261 6 C 0.051 3.949 7 C -0.250 4.250 8 C 0.361 3.639 9 O -0.457 6.457 10 N -0.358 5.358 11 C 0.018 3.982 12 C 0.018 3.982 13 H 0.091 0.909 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.393 4.393 17 H 0.092 0.908 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.209 1.209 22 H -0.224 1.224 23 H -0.193 1.193 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 C 0.041 3.959 28 N -0.234 5.234 29 C 0.070 3.930 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.578 27.108 1.983 29.543 hybrid contribution 1.038 -2.087 0.387 2.363 sum -10.541 25.020 2.370 27.253 Atomic orbital electron populations 1.22089 0.71677 1.05542 1.04369 1.48482 1.07517 0.99751 1.63208 1.76753 1.03478 1.07579 1.19631 1.25831 0.95412 0.92109 0.95454 1.20682 0.93559 0.95906 1.16000 1.21335 0.99981 0.89743 0.83862 1.20526 0.94669 0.94360 1.15398 1.17983 0.87825 0.82431 0.75613 1.90772 1.20612 1.82039 1.52260 1.45690 1.11130 1.04780 1.74195 1.21234 0.89957 0.83899 1.03158 1.22676 0.94337 0.93472 0.87718 0.90928 1.21615 0.93908 0.85496 1.00048 1.44343 1.54101 1.08637 1.26637 1.19560 1.43162 0.85868 0.90731 0.90848 1.25830 1.01477 0.99808 0.97620 1.70191 1.54877 1.18022 1.15126 0.85213 0.77784 0.78333 0.78782 1.20923 1.22441 1.19250 1.21326 0.91764 0.97511 0.87815 1.23143 0.93722 0.83284 1.02149 1.87806 1.67401 1.37053 1.38513 1.23224 0.86315 0.99265 0.87106 1.66732 1.37690 0.98758 1.20176 1.19494 0.89702 0.88562 0.95214 0.89989 0.87801 0.88680 0.73895 0.81583 0.74975 0.91584 0.88893 0.96413 0.90835 0.94003 0.98413 0.91523 0.87421 0.92888 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 11.43 127.77 1.46 2.60 16 2 N -0.40 -7.23 4.03 -366.44 -1.48 -8.70 16 3 N -0.26 -4.52 12.39 -53.07 -0.66 -5.18 16 4 C 0.11 1.45 12.30 86.94 1.07 2.52 16 5 C -0.25 -4.46 6.36 -20.24 -0.13 -4.59 16 6 C 0.08 1.42 9.76 22.92 0.22 1.64 16 7 C -0.24 -4.76 5.89 -20.00 -0.12 -4.87 16 8 C 0.57 13.76 7.77 86.74 0.67 14.43 16 9 O -0.58 -17.70 16.40 -3.96 -0.06 -17.76 16 10 N -0.71 -15.56 5.46 -466.12 -2.54 -18.10 16 11 C 0.14 3.72 5.34 86.38 0.46 4.19 16 12 C 0.08 2.39 2.81 30.69 0.09 2.48 16 13 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 14 C 0.12 4.56 6.02 86.36 0.52 5.08 16 15 N -0.61 -29.84 3.05 -697.54 -2.13 -31.96 16 16 C -0.26 -13.99 9.65 84.03 0.81 -13.18 16 17 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 18 C -0.05 -2.83 4.95 84.86 0.42 -2.41 16 19 N -0.94 -54.35 11.14 21.65 0.24 -54.11 16 20 Si 0.97 43.61 29.59 68.60 2.03 45.64 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 C 0.14 6.63 5.45 86.36 0.47 7.10 16 25 C 0.05 1.92 6.98 72.08 0.50 2.42 16 26 O -0.39 -12.95 10.33 -148.98 -1.54 -14.49 16 27 C 0.21 3.73 10.69 85.26 0.91 4.64 16 28 N -0.52 -10.58 10.37 -191.97 -1.99 -12.57 16 29 C 0.31 6.33 7.96 134.17 1.07 7.40 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.25 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.17 2.52 7.72 -2.91 -0.02 2.49 16 35 H 0.41 7.20 6.51 -92.71 -0.60 6.60 16 36 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 2.72 7.96 -2.38 -0.02 2.70 16 40 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.07 3.48 6.14 -2.39 -0.01 3.46 16 43 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.19 2.28 6.39 -2.91 -0.02 2.26 16 Total: -1.00 -74.09 377.82 0.73 -73.36 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.43 Total: 14.43 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 8.43 Total: 29.45 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -8.55 Total: -130.63 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.60 Total: -32.25 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.09 0.73 -73.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035557416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.917 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds