Wall clock time and date at job start Wed Apr 1 2020 03:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39795 * 125.33731 * 2 1 4 4 C 1.30201 * 110.13329 * 179.97438 * 3 2 1 5 5 C 1.45974 * 107.58723 * 359.97438 * 4 3 2 6 6 C 1.39657 * 134.12718 * 180.02562 * 5 4 3 7 7 C 1.39508 * 117.95380 * 179.97438 * 6 5 4 8 8 C 1.47680 * 120.41015 * 180.02562 * 7 6 5 9 9 O 1.21572 * 120.00046 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99843 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99658 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47126 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.50925 * 60.10149 * 12 11 10 14 14 C 1.53711 * 109.48951 * 180.36200 * 12 11 10 15 15 N 1.47146 * 108.16509 * 172.39691 * 14 12 11 16 16 C 1.36937 * 120.97935 * 129.43371 * 15 14 12 17 17 H 1.08003 * 120.00119 * 333.87097 * 16 15 14 18 18 C 1.38818 * 120.00012 * 153.87103 * 16 15 14 19 19 N 1.31616 * 119.99804 * 159.44782 * 18 16 15 20 20 Si 1.86798 * 119.99907 * 339.17353 * 18 16 15 21 21 H 1.48496 * 109.46963 * 94.51933 * 20 18 16 22 22 H 1.48502 * 109.46941 * 214.52256 * 20 18 16 23 23 H 1.48502 * 109.46975 * 334.52054 * 20 18 16 24 24 C 1.47149 * 118.03987 * 309.16579 * 15 14 12 25 25 C 1.53298 * 108.38351 * 50.78081 * 24 15 14 26 26 O 1.42956 * 109.22418 * 307.70003 * 25 24 15 27 27 C 1.40189 * 119.17816 * 0.27252 * 7 6 5 28 28 N 1.31186 * 121.37444 * 359.43186 * 27 7 6 29 29 C 1.32931 * 121.84544 * 0.57378 * 28 27 7 30 30 H 1.09010 * 109.46767 * 90.03174 * 1 2 3 31 31 H 1.08998 * 109.47035 * 210.02141 * 1 2 3 32 32 H 1.08995 * 109.47914 * 330.03152 * 1 2 3 33 33 H 1.07996 * 126.21029 * 180.02562 * 4 3 2 34 34 H 1.08002 * 121.01722 * 359.93455 * 6 5 4 35 35 H 0.96995 * 120.00115 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47248 * 60.00466 * 11 10 8 37 37 H 1.08995 * 109.47648 * 300.00278 * 11 10 8 38 38 H 1.09004 * 109.83038 * 52.72085 * 14 12 11 39 39 H 1.08994 * 109.74690 * 292.03139 * 14 12 11 40 40 H 0.97004 * 119.99619 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.68718 * 170.50603 * 24 15 14 42 42 H 1.09000 * 109.68352 * 291.02167 * 24 15 14 43 43 H 1.09002 * 109.50955 * 67.62852 * 25 24 15 44 44 H 1.09000 * 109.50991 * 187.72749 * 25 24 15 45 45 H 1.08001 * 119.31060 * 179.70912 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7989 0.0005 5 6 3.5907 -0.6595 0.0016 6 6 4.6327 -1.5894 0.0029 7 6 4.3002 -2.9442 0.0041 8 6 5.3589 -3.9738 0.0062 9 8 6.5287 -3.6428 0.0063 10 7 5.0283 -5.2804 0.0079 11 6 6.0786 -6.3017 0.0093 12 6 5.4386 -7.6914 0.0117 13 1 4.8209 -7.8093 -0.8786 14 6 6.5402 -8.7633 0.0224 15 7 5.9015 -10.0757 0.2095 16 6 6.1856 -11.1232 -0.6254 17 1 6.5193 -10.9340 -1.6350 18 6 6.0446 -12.4284 -0.1742 19 7 5.9162 -13.4131 -1.0380 20 14 6.0448 -12.7881 1.6589 21 1 4.6458 -12.8302 2.1552 22 1 6.6975 -14.0989 1.9061 23 1 6.7913 -11.7210 2.3726 24 6 4.9532 -10.2309 1.3239 25 6 3.9329 -9.0889 1.2530 26 8 4.6270 -7.8414 1.1791 27 6 2.9486 -3.3163 -0.0018 28 7 1.9928 -2.4176 0.0026 29 6 2.2553 -1.1145 0.0015 30 1 -0.3633 -0.0006 -1.0278 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3635 0.8902 0.5133 33 1 4.3742 1.4725 0.0011 34 1 5.6642 -1.2693 0.0024 35 1 4.0949 -5.5445 0.0081 36 1 6.6972 -6.1855 0.8992 37 1 6.6974 -6.1879 -0.8807 38 1 7.2339 -8.5725 0.8413 39 1 7.0778 -8.7484 -0.9257 40 1 5.8180 -14.3252 -0.7226 41 1 4.4392 -11.1883 1.2380 42 1 5.4898 -10.1861 2.2716 43 1 3.3098 -9.2120 0.3671 44 1 3.3058 -9.1052 2.1444 45 1 2.6887 -4.3645 -0.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035557418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:08 Heat of formation + Delta-G solvation = 62.645834 kcal Electronic energy + Delta-G solvation = -29190.871357 eV Core-core repulsion = 25018.512239 eV Total energy + Delta-G solvation = -4172.359118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04400 -40.03036 -38.84364 -38.03270 -35.20053 -34.52072 -34.26810 -32.24787 -31.78464 -31.42928 -30.48313 -27.93548 -27.30445 -25.96420 -24.35872 -23.93106 -23.20624 -22.01101 -21.39397 -20.94713 -20.05565 -18.27382 -18.14507 -17.18748 -16.93049 -16.37233 -16.25707 -16.04557 -15.58147 -15.55162 -15.02269 -14.69126 -14.40635 -14.25390 -14.12652 -13.93012 -13.81677 -13.63259 -13.49316 -13.37840 -12.97996 -12.81789 -12.55042 -12.42402 -11.94024 -11.76299 -11.60153 -11.28837 -10.92757 -10.90725 -10.53555 -10.37326 -10.32905 -9.89214 -9.78868 -9.58846 -9.54088 -9.47812 -9.16942 -8.73298 -8.64624 -7.09907 -6.03913 -3.41160 0.30339 0.41835 1.64091 1.94878 2.63881 2.97755 3.24368 3.43035 3.45482 3.48169 3.61836 3.78759 3.98303 4.10361 4.37007 4.41297 4.43962 4.63897 4.70449 4.77924 4.83555 4.93185 5.03530 5.08866 5.18388 5.26564 5.31496 5.51420 5.58333 5.69105 5.71180 5.76279 5.82978 5.93773 5.94833 6.07389 6.13926 6.25755 6.34008 6.39165 6.45444 6.65154 6.90535 7.35630 7.39771 7.52154 7.78963 8.07047 8.21409 8.79207 9.60135 9.95537 11.11473 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.001980 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.208587 B =14134.719801 C =14723.144440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.393 5.393 3 N -0.241 5.241 4 C 0.097 3.903 5 C -0.240 4.240 6 C 0.073 3.927 7 C -0.231 4.231 8 C 0.569 3.431 9 O -0.541 6.541 10 N -0.714 5.714 11 C 0.131 3.869 12 C 0.061 3.939 13 H 0.066 0.934 14 C 0.125 3.875 15 N -0.607 5.607 16 C -0.264 4.264 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.905 5.905 20 Si 0.883 3.117 21 H -0.289 1.289 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.089 3.911 25 C 0.050 3.950 26 O -0.386 6.386 27 C 0.207 3.793 28 N -0.504 5.504 29 C 0.329 3.671 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.206 0.794 34 H 0.156 0.844 35 H 0.402 0.598 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 26.682 2.588 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.182 5.182 3 N -0.053 5.053 4 C -0.102 4.102 5 C -0.250 4.250 6 C 0.045 3.955 7 C -0.238 4.238 8 C 0.355 3.645 9 O -0.419 6.419 10 N -0.366 5.366 11 C 0.008 3.992 12 C 0.001 3.999 13 H 0.084 0.916 14 C -0.002 4.002 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.106 0.894 18 C -0.176 4.176 19 N -0.548 5.548 20 Si 0.713 3.287 21 H -0.216 1.216 22 H -0.230 1.230 23 H -0.194 1.194 24 C -0.036 4.036 25 C -0.028 4.028 26 O -0.305 6.305 27 C 0.036 3.964 28 N -0.218 5.218 29 C 0.090 3.910 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.223 0.777 34 H 0.174 0.826 35 H 0.238 0.762 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.157 27.652 2.676 29.580 hybrid contribution 0.764 -1.265 0.865 1.713 sum -9.394 26.387 3.541 28.232 Atomic orbital electron populations 1.21875 0.73064 1.04663 1.03519 1.48151 1.06515 1.00015 1.63563 1.76755 1.02754 1.07346 1.18415 1.25161 0.94907 0.92524 0.97583 1.20474 0.94014 0.94849 1.15630 1.21180 0.99376 0.89958 0.85013 1.20675 0.94914 0.94570 1.13660 1.17772 0.87936 0.82193 0.76572 1.90789 1.19106 1.81550 1.50479 1.45800 1.10957 1.05205 1.74595 1.21463 0.89859 0.84582 1.03337 1.22961 0.94215 0.93828 0.88870 0.91600 1.21555 0.92773 0.85073 1.00781 1.44357 1.46805 1.08386 1.33612 1.18909 1.42920 0.83770 0.93539 0.89352 1.25247 0.99496 0.95419 0.97393 1.69827 1.51470 0.99960 1.33517 0.86965 0.77316 0.76973 0.87436 1.21625 1.22954 1.19433 1.22014 0.91888 0.98121 0.91586 1.23064 0.94208 0.84365 1.01183 1.87798 1.62711 1.36913 1.43108 1.22916 0.86852 0.98405 0.88179 1.66684 1.37344 0.98489 1.19320 1.19151 0.88708 0.88187 0.94988 0.90854 0.88946 0.89248 0.77710 0.82646 0.76202 0.90384 0.89626 0.94645 0.90688 0.92631 0.90174 0.94679 0.92937 0.89511 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 11.43 59.85 0.68 1.34 16 2 N -0.39 -3.72 4.03 -67.17 -0.27 -3.99 16 3 N -0.24 -2.23 12.39 31.87 0.39 -1.83 16 4 C 0.10 0.72 12.30 -15.15 -0.19 0.54 16 5 C -0.24 -2.26 6.37 -105.20 -0.67 -2.93 16 6 C 0.07 0.69 9.76 -38.58 -0.38 0.31 16 7 C -0.23 -2.35 5.89 -104.84 -0.62 -2.97 16 8 C 0.57 6.93 7.77 -12.41 -0.10 6.83 16 9 O -0.54 -8.27 16.40 5.30 0.09 -8.19 16 10 N -0.71 -8.07 5.40 -61.30 -0.33 -8.41 16 11 C 0.13 1.70 5.37 -4.04 -0.02 1.67 16 12 C 0.06 0.92 2.88 -26.36 -0.08 0.84 16 13 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.12 2.31 6.05 -3.32 -0.02 2.29 16 15 N -0.61 -13.85 2.83 -171.57 -0.49 -14.34 16 16 C -0.26 -7.11 10.09 -15.06 -0.15 -7.26 16 17 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 18 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 19 N -0.91 -27.05 13.97 55.49 0.78 -26.28 16 20 Si 0.88 21.80 24.32 -169.99 -4.13 17.67 16 21 H -0.29 -6.81 6.69 56.52 0.38 -6.43 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.27 -6.59 6.42 56.52 0.36 -6.23 16 24 C 0.09 1.87 4.38 -3.53 -0.02 1.85 16 25 C 0.05 0.83 6.98 37.31 0.26 1.09 16 26 O -0.39 -6.16 10.13 -35.23 -0.36 -6.52 16 27 C 0.21 1.93 10.69 -17.10 -0.18 1.75 16 28 N -0.50 -5.34 10.37 -12.02 -0.12 -5.46 16 29 C 0.33 3.49 7.96 -156.09 -1.24 2.25 16 30 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.16 1.25 7.72 -52.49 -0.41 0.84 16 35 H 0.40 3.79 6.39 -40.82 -0.26 3.53 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.34 7.96 -51.93 -0.41 0.93 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 1.80 4.68 -51.93 -0.24 1.56 16 42 H 0.04 0.75 6.81 -51.93 -0.35 0.40 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.17 1.15 6.39 -52.49 -0.34 0.81 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -35.05 370.86 -7.52 -42.57 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.86 Total: 1.00 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -2.80 Total: 8.18 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.04 Total: -60.31 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.27 Total: -14.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.13 Total: 17.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.05 -7.52 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035557418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.216 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds