Wall clock time and date at job start Wed Apr 1 2020 03:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39795 * 125.33731 * 2 1 4 4 C 1.30201 * 110.13329 * 179.97438 * 3 2 1 5 5 C 1.45974 * 107.58723 * 359.97438 * 4 3 2 6 6 C 1.39657 * 134.12718 * 180.02562 * 5 4 3 7 7 C 1.39508 * 117.95380 * 179.97438 * 6 5 4 8 8 C 1.47680 * 120.41015 * 180.02562 * 7 6 5 9 9 O 1.21572 * 120.00046 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99843 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99658 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47126 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.50925 * 60.10149 * 12 11 10 14 14 C 1.53711 * 109.48951 * 180.36200 * 12 11 10 15 15 N 1.47146 * 108.16509 * 172.39691 * 14 12 11 16 16 C 1.36937 * 120.97935 * 129.43371 * 15 14 12 17 17 H 1.08003 * 120.00119 * 333.87097 * 16 15 14 18 18 C 1.38818 * 120.00012 * 153.87103 * 16 15 14 19 19 N 1.31616 * 119.99804 * 159.44782 * 18 16 15 20 20 Si 1.86798 * 119.99907 * 339.17353 * 18 16 15 21 21 H 1.48496 * 109.46963 * 94.51933 * 20 18 16 22 22 H 1.48502 * 109.46941 * 214.52256 * 20 18 16 23 23 H 1.48502 * 109.46975 * 334.52054 * 20 18 16 24 24 C 1.47149 * 118.03987 * 309.16579 * 15 14 12 25 25 C 1.53298 * 108.38351 * 50.78081 * 24 15 14 26 26 O 1.42956 * 109.22418 * 307.70003 * 25 24 15 27 27 C 1.40189 * 119.17816 * 0.27252 * 7 6 5 28 28 N 1.31186 * 121.37444 * 359.43186 * 27 7 6 29 29 C 1.32931 * 121.84544 * 0.57378 * 28 27 7 30 30 H 1.09010 * 109.46767 * 90.03174 * 1 2 3 31 31 H 1.08998 * 109.47035 * 210.02141 * 1 2 3 32 32 H 1.08995 * 109.47914 * 330.03152 * 1 2 3 33 33 H 1.07996 * 126.21029 * 180.02562 * 4 3 2 34 34 H 1.08002 * 121.01722 * 359.93455 * 6 5 4 35 35 H 0.96995 * 120.00115 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47248 * 60.00466 * 11 10 8 37 37 H 1.08995 * 109.47648 * 300.00278 * 11 10 8 38 38 H 1.09004 * 109.83038 * 52.72085 * 14 12 11 39 39 H 1.08994 * 109.74690 * 292.03139 * 14 12 11 40 40 H 0.97004 * 119.99619 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.68718 * 170.50603 * 24 15 14 42 42 H 1.09000 * 109.68352 * 291.02167 * 24 15 14 43 43 H 1.09002 * 109.50955 * 67.62852 * 25 24 15 44 44 H 1.09000 * 109.50991 * 187.72749 * 25 24 15 45 45 H 1.08001 * 119.31060 * 179.70912 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7989 0.0005 5 6 3.5907 -0.6595 0.0016 6 6 4.6327 -1.5894 0.0029 7 6 4.3002 -2.9442 0.0041 8 6 5.3589 -3.9738 0.0062 9 8 6.5287 -3.6428 0.0063 10 7 5.0283 -5.2804 0.0079 11 6 6.0786 -6.3017 0.0093 12 6 5.4386 -7.6914 0.0117 13 1 4.8209 -7.8093 -0.8786 14 6 6.5402 -8.7633 0.0224 15 7 5.9015 -10.0757 0.2095 16 6 6.1856 -11.1232 -0.6254 17 1 6.5193 -10.9340 -1.6350 18 6 6.0446 -12.4284 -0.1742 19 7 5.9162 -13.4131 -1.0380 20 14 6.0448 -12.7881 1.6589 21 1 4.6458 -12.8302 2.1552 22 1 6.6975 -14.0989 1.9061 23 1 6.7913 -11.7210 2.3726 24 6 4.9532 -10.2309 1.3239 25 6 3.9329 -9.0889 1.2530 26 8 4.6270 -7.8414 1.1791 27 6 2.9486 -3.3163 -0.0018 28 7 1.9928 -2.4176 0.0026 29 6 2.2553 -1.1145 0.0015 30 1 -0.3633 -0.0006 -1.0278 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3635 0.8902 0.5133 33 1 4.3742 1.4725 0.0011 34 1 5.6642 -1.2693 0.0024 35 1 4.0949 -5.5445 0.0081 36 1 6.6972 -6.1855 0.8992 37 1 6.6974 -6.1879 -0.8807 38 1 7.2339 -8.5725 0.8413 39 1 7.0778 -8.7484 -0.9257 40 1 5.8180 -14.3252 -0.7226 41 1 4.4392 -11.1883 1.2380 42 1 5.4898 -10.1861 2.2716 43 1 3.3098 -9.2120 0.3671 44 1 3.3058 -9.1052 2.1444 45 1 2.6887 -4.3645 -0.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035557418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:06 Heat of formation + Delta-G solvation = 36.518215 kcal Electronic energy + Delta-G solvation = -29192.004335 eV Core-core repulsion = 25018.512239 eV Total energy + Delta-G solvation = -4173.492096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.71194 -40.99886 -40.14281 -38.82740 -36.65740 -35.82835 -34.91326 -33.66489 -33.08107 -32.57297 -31.34678 -29.35731 -28.10393 -27.26923 -25.09093 -24.86891 -24.77997 -23.35176 -22.02747 -21.97787 -21.41727 -19.18593 -18.89554 -18.78591 -17.94090 -17.59999 -17.27086 -16.96794 -16.87890 -16.52835 -16.05600 -15.82976 -15.76698 -15.57580 -15.29533 -15.10423 -14.76804 -14.50015 -14.45401 -14.22524 -14.11756 -13.89693 -13.51047 -13.47387 -13.42572 -13.29016 -12.92921 -12.37644 -12.29718 -12.25171 -12.06227 -11.61449 -11.55317 -11.42158 -11.30089 -11.12760 -10.60581 -10.49628 -10.25312 -10.13054 -9.42104 -8.97091 -8.18861 -5.51806 -0.36265 -0.33013 1.05831 1.27713 1.34490 1.41743 1.49495 1.77538 2.03907 2.38629 2.69355 2.73075 3.01086 3.01736 3.17374 3.22934 3.48873 3.62849 3.73446 3.92089 3.96075 4.04330 4.19807 4.25880 4.30028 4.37205 4.37255 4.40443 4.47542 4.52317 4.61828 4.64743 4.72880 4.81571 4.90377 4.91391 4.97327 5.10423 5.17188 5.31809 5.36364 5.64016 5.78532 6.08880 6.21368 6.27046 6.49020 6.68772 6.82674 7.15536 7.54986 7.95056 9.00290 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.001980 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.208587 B =14134.719801 C =14723.144440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.263 5.263 4 C 0.110 3.890 5 C -0.252 4.252 6 C 0.079 3.921 7 C -0.242 4.242 8 C 0.574 3.426 9 O -0.576 6.576 10 N -0.706 5.706 11 C 0.141 3.859 12 C 0.075 3.925 13 H 0.071 0.929 14 C 0.118 3.882 15 N -0.622 5.622 16 C -0.249 4.249 17 H 0.059 0.941 18 C -0.034 4.034 19 N -0.953 5.953 20 Si 0.945 3.055 21 H -0.270 1.270 22 H -0.312 1.312 23 H -0.265 1.265 24 C 0.080 3.920 25 C 0.059 3.941 26 O -0.381 6.381 27 C 0.212 3.788 28 N -0.519 5.519 29 C 0.310 3.690 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.245 0.755 34 H 0.167 0.833 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.262 0.738 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.121 0.879 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 28.899 3.910 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.190 5.190 3 N -0.075 5.075 4 C -0.088 4.088 5 C -0.262 4.262 6 C 0.051 3.949 7 C -0.250 4.250 8 C 0.362 3.638 9 O -0.456 6.456 10 N -0.358 5.358 11 C 0.017 3.983 12 C 0.016 3.984 13 H 0.089 0.911 14 C -0.008 4.008 15 N -0.348 5.348 16 C -0.379 4.379 17 H 0.077 0.923 18 C -0.229 4.229 19 N -0.599 5.599 20 Si 0.774 3.226 21 H -0.196 1.196 22 H -0.241 1.241 23 H -0.190 1.190 24 C -0.045 4.045 25 C -0.019 4.019 26 O -0.300 6.300 27 C 0.041 3.959 28 N -0.234 5.234 29 C 0.070 3.930 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.251 0.749 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.229 29.929 4.020 32.217 hybrid contribution 1.097 -1.847 0.389 2.183 sum -10.131 28.081 4.409 30.177 Atomic orbital electron populations 1.22088 0.71692 1.05538 1.04361 1.48481 1.07516 0.99771 1.63205 1.76752 1.03492 1.07594 1.19632 1.25829 0.95403 0.92137 0.95464 1.20686 0.93578 0.95895 1.16015 1.21339 0.99961 0.89772 0.83873 1.20530 0.94694 0.94366 1.15374 1.17959 0.87786 0.82446 0.75622 1.90773 1.20580 1.82042 1.52246 1.45661 1.11199 1.04736 1.74206 1.21260 0.89968 0.83702 1.03415 1.22774 0.92961 0.93734 0.88967 0.91080 1.21750 0.94022 0.84121 1.00909 1.44485 1.48008 1.08731 1.33568 1.18865 1.40904 0.85068 0.93036 0.92329 1.25858 1.00436 0.95391 1.01259 1.69951 1.54260 1.00293 1.35417 0.85951 0.78110 0.75999 0.82519 1.19620 1.24110 1.19015 1.22131 0.92430 0.99323 0.90572 1.23013 0.93046 0.82690 1.03107 1.87825 1.62536 1.36332 1.43314 1.23235 0.86318 0.99263 0.87092 1.66732 1.37731 0.98752 1.20176 1.19495 0.89692 0.88564 0.95222 0.90016 0.88662 0.87814 0.73918 0.81583 0.74923 0.91060 0.88980 0.94317 0.90718 0.92867 0.91951 0.94720 0.92552 0.86093 0.79094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 11.43 127.77 1.46 2.57 16 2 N -0.40 -7.07 4.03 -366.42 -1.48 -8.55 16 3 N -0.26 -4.43 12.39 -53.08 -0.66 -5.09 16 4 C 0.11 1.40 12.30 86.94 1.07 2.47 16 5 C -0.25 -4.32 6.37 -20.24 -0.13 -4.45 16 6 C 0.08 1.35 9.76 22.92 0.22 1.58 16 7 C -0.24 -4.53 5.89 -20.00 -0.12 -4.64 16 8 C 0.57 13.00 7.77 86.74 0.67 13.67 16 9 O -0.58 -16.90 16.40 -3.94 -0.06 -16.96 16 10 N -0.71 -14.35 5.40 -466.14 -2.52 -16.87 16 11 C 0.14 3.35 5.37 86.38 0.46 3.81 16 12 C 0.08 2.10 2.88 30.83 0.09 2.19 16 13 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 14 C 0.12 4.22 6.05 86.50 0.52 4.74 16 15 N -0.62 -27.91 2.83 -696.74 -1.97 -29.88 16 16 C -0.25 -13.64 10.09 84.03 0.85 -12.79 16 17 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 18 C -0.03 -1.96 5.24 84.86 0.45 -1.51 16 19 N -0.95 -58.48 13.97 21.65 0.30 -58.18 16 20 Si 0.95 45.34 24.32 68.60 1.67 47.01 16 21 H -0.27 -11.98 6.69 99.48 0.67 -11.32 16 22 H -0.31 -15.38 7.11 99.48 0.71 -14.68 16 23 H -0.27 -12.38 6.42 99.48 0.64 -11.74 16 24 C 0.08 3.19 4.38 86.36 0.38 3.57 16 25 C 0.06 1.77 6.98 72.08 0.50 2.27 16 26 O -0.38 -10.92 10.13 -148.98 -1.51 -12.43 16 27 C 0.21 3.55 10.69 85.26 0.91 4.46 16 28 N -0.52 -10.25 10.37 -191.96 -1.99 -12.24 16 29 C 0.31 6.17 7.96 134.18 1.07 7.24 16 30 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.24 0.78 8.06 -2.91 -0.02 0.75 16 34 H 0.17 2.39 7.72 -2.91 -0.02 2.37 16 35 H 0.41 6.58 6.39 -92.71 -0.59 5.99 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.06 2.70 4.68 -2.39 -0.01 2.69 16 42 H 0.03 1.39 6.81 -2.39 -0.02 1.37 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.19 2.10 6.39 -2.91 -0.02 2.08 16 Total: -1.00 -76.35 370.86 0.53 -75.81 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.34 Total: 12.20 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 8.41 Total: 25.16 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -8.31 Total: -130.79 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.57 Total: -29.39 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Total: -76.35 0.53 -75.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035557418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.333 kcal (2) G-P(sol) polarization free energy of solvation -76.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds