Wall clock time and date at job start Wed Apr 1 2020 03:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28815 * 125.94242 * 2 1 4 4 N 1.28641 * 111.79614 * 180.02562 * 3 2 1 5 5 C 1.34756 * 109.29075 * 0.02562 * 4 3 2 6 6 C 1.39908 * 134.59066 * 179.97438 * 5 4 3 7 7 C 1.36154 * 119.97726 * 180.02562 * 6 5 4 8 8 C 1.40254 * 120.55771 * 359.71963 * 7 6 5 9 9 C 1.47712 * 119.88432 * 180.30517 * 8 7 6 10 10 O 1.21577 * 120.00502 * 180.25063 * 9 8 7 11 11 N 1.34776 * 120.00243 * 0.25056 * 9 8 7 12 12 C 1.46501 * 120.00382 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46856 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.51080 * 60.00600 * 13 12 11 15 15 C 1.53304 * 109.50913 * 180.10218 * 13 12 11 16 16 N 1.47152 * 108.38099 * 172.22424 * 15 13 12 17 17 C 1.36943 * 120.97853 * 129.48985 * 16 15 13 18 18 H 1.07997 * 119.99732 * 206.22600 * 17 16 15 19 19 C 1.38813 * 120.00020 * 26.22133 * 17 16 15 20 20 N 1.31622 * 119.99863 * 16.91203 * 19 17 16 21 21 Si 1.86797 * 120.00057 * 196.90704 * 19 17 16 22 22 H 1.48499 * 109.46967 * 90.00193 * 21 19 17 23 23 H 1.48495 * 109.47226 * 210.00268 * 21 19 17 24 24 H 1.48505 * 109.47268 * 330.00566 * 21 19 17 25 25 C 1.47144 * 118.03735 * 309.46570 * 16 15 13 26 26 C 1.53293 * 108.38772 * 50.53795 * 25 16 15 27 27 O 1.42954 * 109.26110 * 307.71987 * 26 25 16 28 28 C 1.39171 * 120.23625 * 0.55716 * 8 7 6 29 29 C 1.37366 * 125.94580 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47383 * 269.96745 * 1 2 3 31 31 H 1.09003 * 109.47214 * 29.97775 * 1 2 3 32 32 H 1.09005 * 109.46962 * 149.97011 * 1 2 3 33 33 H 1.08008 * 120.00912 * 0.03970 * 6 5 4 34 34 H 1.07998 * 119.72191 * 179.97438 * 7 6 5 35 35 H 0.97001 * 119.99935 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47171 * 300.00522 * 12 11 9 37 37 H 1.08998 * 109.46907 * 60.00216 * 12 11 9 38 38 H 1.08997 * 109.68435 * 291.95012 * 15 13 12 39 39 H 1.09001 * 109.68101 * 52.46458 * 15 13 12 40 40 H 0.96999 * 119.99571 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.68271 * 170.25902 * 25 16 15 42 42 H 1.09000 * 109.68155 * 290.77177 * 25 16 15 43 43 H 1.09001 * 109.51282 * 67.61936 * 26 25 16 44 44 H 1.09003 * 109.51154 * 187.77352 * 26 25 16 45 45 H 1.08000 * 120.24666 * 179.72241 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7285 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0028 7 6 4.4457 -2.8455 -0.0041 8 6 3.1371 -3.3502 0.0019 9 6 2.9113 -4.8099 0.0072 10 8 1.7779 -5.2498 0.0078 11 7 3.9617 -5.6544 0.0115 12 6 3.7377 -7.1022 0.0174 13 6 5.0854 -7.8266 0.0220 14 1 5.6482 -7.5428 0.9113 15 6 4.8521 -9.3418 0.0256 16 7 6.1494 -10.0114 -0.1589 17 6 6.5517 -11.0132 0.6837 18 1 7.6043 -11.2058 0.8297 19 6 5.6066 -11.7810 1.3502 20 7 4.3557 -11.7864 0.9407 21 14 6.1101 -12.8064 2.8281 22 1 5.9621 -11.9981 4.0650 23 1 5.2423 -14.0083 2.9154 24 1 7.5261 -13.2281 2.6788 25 6 7.0012 -9.5733 -1.2758 26 6 7.1298 -8.0469 -1.2160 27 8 5.8254 -7.4661 -1.1468 28 6 2.0506 -2.4805 -0.0026 29 6 2.2713 -1.1121 -0.0005 30 1 -0.3634 -0.0006 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5143 33 1 5.6811 -1.1235 -0.0026 34 1 5.2827 -3.5280 -0.0055 35 1 4.8660 -5.3035 0.0114 36 1 3.1737 -7.3789 0.9081 37 1 3.1751 -7.3863 -0.8718 38 1 4.4152 -9.6437 0.9774 39 1 4.1798 -9.6116 -0.7889 40 1 3.6954 -12.3232 1.4062 41 1 7.9875 -10.0285 -1.1859 42 1 6.5462 -9.8672 -2.2217 43 1 7.7009 -7.7640 -0.3317 44 1 7.6406 -7.6893 -2.1101 45 1 1.0429 -2.8690 -0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035589215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:40 Heat of formation + Delta-G solvation = 68.514696 kcal Electronic energy + Delta-G solvation = -29354.966322 eV Core-core repulsion = 25182.861697 eV Total energy + Delta-G solvation = -4172.104625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.53523 -40.08993 -38.59673 -37.60611 -35.27323 -34.94830 -34.39011 -31.74409 -31.28167 -31.18279 -30.45503 -28.33718 -27.47568 -25.98990 -24.31558 -23.85368 -23.31489 -21.77406 -21.51444 -20.92983 -19.76425 -18.51777 -18.07189 -17.20664 -17.10199 -16.65631 -16.12715 -16.02565 -15.29210 -14.91215 -14.85733 -14.63175 -14.43742 -14.27343 -13.98074 -13.90241 -13.66426 -13.32246 -13.30979 -13.01247 -12.90229 -12.54506 -12.48771 -12.10998 -12.07241 -11.58272 -11.17573 -11.14867 -11.07054 -10.89340 -10.78789 -10.47632 -10.29665 -10.15941 -9.99633 -9.71004 -9.38180 -9.15061 -8.99278 -8.70391 -8.60030 -6.81510 -5.89587 -3.33488 -0.00872 0.80353 1.74400 1.78451 2.71495 3.06231 3.31480 3.38548 3.39928 3.47937 3.58100 4.01245 4.17900 4.24795 4.39177 4.46047 4.50214 4.63905 4.65976 4.79574 4.93307 4.94997 5.13807 5.30589 5.46155 5.50040 5.54878 5.61761 5.78498 5.81295 5.85090 5.88060 5.95206 6.05259 6.05917 6.15908 6.19624 6.29146 6.43383 6.55029 6.73227 7.00908 7.41779 7.49888 7.66273 7.77211 7.92906 8.15520 8.27936 9.05693 9.68522 10.25210 11.18534 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.002072 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.562975 B =13507.636773 C =14108.521275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.315 5.315 3 N -0.017 5.017 4 N -0.258 5.258 5 C 0.027 3.973 6 C -0.054 4.054 7 C -0.089 4.089 8 C -0.097 4.097 9 C 0.556 3.444 10 O -0.538 6.538 11 N -0.709 5.709 12 C 0.132 3.868 13 C 0.054 3.946 14 H 0.057 0.943 15 C 0.152 3.848 16 N -0.594 5.594 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.108 3.892 26 C 0.050 3.950 27 O -0.390 6.390 28 C -0.034 4.034 29 C 0.013 3.987 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.403 0.597 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.032 0.968 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 21.556 -2.098 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.116 5.116 3 N 0.002 4.998 4 N -0.132 5.132 5 C -0.099 4.099 6 C -0.076 4.076 7 C -0.110 4.110 8 C -0.104 4.104 9 C 0.342 3.658 10 O -0.417 6.417 11 N -0.360 5.360 12 C 0.009 3.991 13 C -0.006 4.006 14 H 0.075 0.925 15 C 0.026 3.974 16 N -0.318 5.318 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.018 4.018 26 C -0.028 4.028 27 O -0.310 6.310 28 C -0.057 4.057 29 C -0.106 4.106 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.239 0.761 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.043 22.743 -2.171 23.396 hybrid contribution 0.503 -1.715 0.908 2.004 sum -4.540 21.028 -1.262 21.549 Atomic orbital electron populations 1.22306 0.71814 1.06198 1.05237 1.47136 1.08933 1.02965 1.52549 1.77994 0.96944 1.12334 1.12502 1.75373 1.07543 1.11307 1.18954 1.20100 0.93253 0.91220 1.05333 1.19930 0.97657 0.90993 0.99045 1.20944 0.96146 0.95214 0.98734 1.19818 0.93294 0.93419 1.03875 1.17997 0.85131 0.85511 0.77174 1.90796 1.22412 1.78344 1.50130 1.45885 1.09088 1.07297 1.73739 1.21496 0.96883 0.77378 1.03388 1.23165 0.90766 0.98764 0.87863 0.92491 1.21310 0.88056 0.85134 1.02944 1.44047 1.17915 1.39920 1.29907 1.19200 0.92010 1.08646 1.18754 0.91291 1.25067 0.96170 0.97762 1.00615 1.70016 1.02080 1.42598 1.39872 0.86241 0.77853 0.79501 0.82880 1.21322 1.21639 1.20387 1.21605 0.95930 0.92483 0.91771 1.23010 0.83916 0.95488 1.00358 1.87772 1.28520 1.71289 1.43396 1.20059 1.00504 0.87570 0.97587 1.19612 0.91035 0.90811 1.09111 0.88927 0.87715 0.88091 0.83668 0.83943 0.76120 0.89663 0.90393 0.88537 0.95010 0.93370 0.91952 0.95530 0.93807 0.89948 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 11.40 59.84 0.68 1.03 16 2 N -0.32 -2.90 3.80 -65.54 -0.25 -3.15 16 3 N -0.02 -0.19 13.07 60.35 0.79 0.60 16 4 N -0.26 -3.26 12.42 32.09 0.40 -2.86 16 5 C 0.03 0.31 7.36 -84.95 -0.63 -0.32 16 6 C -0.05 -0.49 10.03 -39.71 -0.40 -0.89 16 7 C -0.09 -0.79 9.46 -39.57 -0.37 -1.16 16 8 C -0.10 -1.06 5.88 -104.92 -0.62 -1.67 16 9 C 0.56 7.54 7.77 -12.39 -0.10 7.45 16 10 O -0.54 -9.08 16.32 5.30 0.09 -8.99 16 11 N -0.71 -9.25 5.40 -61.29 -0.33 -9.58 16 12 C 0.13 2.08 5.37 -4.04 -0.02 2.06 16 13 C 0.05 0.95 2.86 -26.57 -0.08 0.88 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 15 C 0.15 3.44 4.73 -3.53 -0.02 3.42 16 16 N -0.59 -14.30 3.05 -171.83 -0.52 -14.82 16 17 C -0.26 -6.77 9.65 -15.06 -0.15 -6.92 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 19 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 20 N -0.90 -25.30 11.14 55.49 0.62 -24.68 16 21 Si 0.91 20.98 29.59 -169.99 -5.03 15.95 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.11 2.16 6.73 -3.54 -0.02 2.14 16 26 C 0.05 0.82 6.98 37.31 0.26 1.08 16 27 O -0.39 -6.74 10.14 -35.23 -0.36 -7.10 16 28 C -0.03 -0.35 9.59 -39.10 -0.38 -0.73 16 29 C 0.01 0.13 6.93 -84.24 -0.58 -0.45 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.14 0.95 6.36 -52.49 -0.33 0.61 16 35 H 0.40 4.37 6.35 -40.82 -0.26 4.11 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.10 2.41 6.14 -51.93 -0.32 2.09 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.15 1.36 7.63 -52.49 -0.40 0.96 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -33.81 376.06 -7.35 -41.17 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.92 Total: 1.90 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -2.50 Total: 5.90 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.70 Total: -54.50 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.27 Total: -16.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.81 -7.35 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035589215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.680 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds