Wall clock time and date at job start Wed Apr 1 2020 03:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28815 * 125.94242 * 2 1 4 4 N 1.28641 * 111.79614 * 180.02562 * 3 2 1 5 5 C 1.34756 * 109.29075 * 0.02562 * 4 3 2 6 6 C 1.39908 * 134.59066 * 179.97438 * 5 4 3 7 7 C 1.36154 * 119.97726 * 180.02562 * 6 5 4 8 8 C 1.40254 * 120.55771 * 359.71963 * 7 6 5 9 9 C 1.47712 * 119.88432 * 180.30517 * 8 7 6 10 10 O 1.21577 * 120.00502 * 180.25063 * 9 8 7 11 11 N 1.34776 * 120.00243 * 0.25056 * 9 8 7 12 12 C 1.46501 * 120.00382 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46856 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.51080 * 60.00600 * 13 12 11 15 15 C 1.53304 * 109.50913 * 180.10218 * 13 12 11 16 16 N 1.47152 * 108.38099 * 172.22424 * 15 13 12 17 17 C 1.36943 * 120.97853 * 129.48985 * 16 15 13 18 18 H 1.07997 * 119.99732 * 206.22600 * 17 16 15 19 19 C 1.38813 * 120.00020 * 26.22133 * 17 16 15 20 20 N 1.31622 * 119.99863 * 16.91203 * 19 17 16 21 21 Si 1.86797 * 120.00057 * 196.90704 * 19 17 16 22 22 H 1.48499 * 109.46967 * 90.00193 * 21 19 17 23 23 H 1.48495 * 109.47226 * 210.00268 * 21 19 17 24 24 H 1.48505 * 109.47268 * 330.00566 * 21 19 17 25 25 C 1.47144 * 118.03735 * 309.46570 * 16 15 13 26 26 C 1.53293 * 108.38772 * 50.53795 * 25 16 15 27 27 O 1.42954 * 109.26110 * 307.71987 * 26 25 16 28 28 C 1.39171 * 120.23625 * 0.55716 * 8 7 6 29 29 C 1.37366 * 125.94580 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47383 * 269.96745 * 1 2 3 31 31 H 1.09003 * 109.47214 * 29.97775 * 1 2 3 32 32 H 1.09005 * 109.46962 * 149.97011 * 1 2 3 33 33 H 1.08008 * 120.00912 * 0.03970 * 6 5 4 34 34 H 1.07998 * 119.72191 * 179.97438 * 7 6 5 35 35 H 0.97001 * 119.99935 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47171 * 300.00522 * 12 11 9 37 37 H 1.08998 * 109.46907 * 60.00216 * 12 11 9 38 38 H 1.08997 * 109.68435 * 291.95012 * 15 13 12 39 39 H 1.09001 * 109.68101 * 52.46458 * 15 13 12 40 40 H 0.96999 * 119.99571 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.68271 * 170.25902 * 25 16 15 42 42 H 1.09000 * 109.68155 * 290.77177 * 25 16 15 43 43 H 1.09001 * 109.51282 * 67.61936 * 26 25 16 44 44 H 1.09003 * 109.51154 * 187.77352 * 26 25 16 45 45 H 1.08000 * 120.24666 * 179.72241 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7285 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0028 7 6 4.4457 -2.8455 -0.0041 8 6 3.1371 -3.3502 0.0019 9 6 2.9113 -4.8099 0.0072 10 8 1.7779 -5.2498 0.0078 11 7 3.9617 -5.6544 0.0115 12 6 3.7377 -7.1022 0.0174 13 6 5.0854 -7.8266 0.0220 14 1 5.6482 -7.5428 0.9113 15 6 4.8521 -9.3418 0.0256 16 7 6.1494 -10.0114 -0.1589 17 6 6.5517 -11.0132 0.6837 18 1 7.6043 -11.2058 0.8297 19 6 5.6066 -11.7810 1.3502 20 7 4.3557 -11.7864 0.9407 21 14 6.1101 -12.8064 2.8281 22 1 5.9621 -11.9981 4.0650 23 1 5.2423 -14.0083 2.9154 24 1 7.5261 -13.2281 2.6788 25 6 7.0012 -9.5733 -1.2758 26 6 7.1298 -8.0469 -1.2160 27 8 5.8254 -7.4661 -1.1468 28 6 2.0506 -2.4805 -0.0026 29 6 2.2713 -1.1121 -0.0005 30 1 -0.3634 -0.0006 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5143 33 1 5.6811 -1.1235 -0.0026 34 1 5.2827 -3.5280 -0.0055 35 1 4.8660 -5.3035 0.0114 36 1 3.1737 -7.3789 0.9081 37 1 3.1751 -7.3863 -0.8718 38 1 4.4152 -9.6437 0.9774 39 1 4.1798 -9.6116 -0.7889 40 1 3.6954 -12.3232 1.4062 41 1 7.9875 -10.0285 -1.1859 42 1 6.5462 -9.8672 -2.2217 43 1 7.7009 -7.7640 -0.3317 44 1 7.6406 -7.6893 -2.1101 45 1 1.0429 -2.8690 -0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035589215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:39 Heat of formation + Delta-G solvation = 44.106873 kcal Electronic energy + Delta-G solvation = -29356.024725 eV Core-core repulsion = 25182.861697 eV Total energy + Delta-G solvation = -4173.163027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.29710 -41.17120 -40.03410 -38.49074 -36.47743 -35.97048 -35.85098 -33.25846 -32.83361 -31.90419 -31.54489 -29.10744 -28.83974 -27.46888 -25.45489 -24.94162 -24.62787 -23.21732 -22.23061 -21.97879 -21.32654 -19.48699 -18.93516 -18.75609 -17.81268 -17.74366 -17.44534 -17.20763 -16.86944 -16.11787 -16.05198 -15.89878 -15.52809 -15.37343 -15.28058 -15.00034 -14.58043 -14.47303 -14.44602 -14.33414 -13.82392 -13.79573 -13.28455 -13.17506 -13.04348 -12.98006 -12.79732 -12.66185 -12.50579 -12.14846 -12.07345 -11.86544 -11.84715 -11.82847 -11.32511 -11.16533 -10.76789 -10.53261 -10.29512 -10.04248 -9.45577 -8.73708 -7.90093 -5.37285 -0.81210 0.07008 0.95460 1.14193 1.47748 1.49155 1.57845 1.78432 2.00369 2.48877 2.62557 2.79720 2.86019 3.24393 3.44140 3.49772 3.54531 3.60014 3.90825 3.94758 4.03838 4.11003 4.22830 4.25711 4.30668 4.42365 4.49056 4.55555 4.56555 4.64240 4.70322 4.79470 4.83937 4.87865 5.00893 5.09309 5.10541 5.13560 5.26231 5.29749 5.40533 5.49546 5.55965 5.62224 6.28588 6.35225 6.47271 7.07258 7.11125 7.13601 7.76375 8.29444 9.15566 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.002072 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.562975 B =13507.636773 C =14108.521275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.304 5.304 3 N -0.030 5.030 4 N -0.289 5.289 5 C 0.012 3.988 6 C -0.054 4.054 7 C -0.078 4.078 8 C -0.107 4.107 9 C 0.559 3.441 10 O -0.576 6.576 11 N -0.698 5.698 12 C 0.143 3.857 13 C 0.076 3.924 14 H 0.068 0.932 15 C 0.158 3.842 16 N -0.614 5.614 17 C -0.264 4.264 18 H 0.074 0.926 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.283 1.283 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.100 3.900 26 C 0.058 3.942 27 O -0.388 6.388 28 C -0.030 4.030 29 C 0.002 3.998 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.417 0.583 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.000 1.000 40 H 0.251 0.749 41 H 0.071 0.929 42 H 0.014 0.986 43 H 0.057 0.943 44 H 0.121 0.879 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 23.085 -1.923 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.106 5.106 3 N -0.011 5.011 4 N -0.162 5.162 5 C -0.115 4.115 6 C -0.076 4.076 7 C -0.099 4.099 8 C -0.114 4.114 9 C 0.347 3.653 10 O -0.457 6.457 11 N -0.350 5.350 12 C 0.018 3.982 13 C 0.016 3.984 14 H 0.086 0.914 15 C 0.031 3.969 16 N -0.339 5.339 17 C -0.394 4.394 18 H 0.092 0.908 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.210 1.210 23 H -0.225 1.225 24 H -0.192 1.192 25 C -0.025 4.025 26 C -0.020 4.020 27 O -0.307 6.307 28 C -0.052 4.052 29 C -0.117 4.117 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.187 0.813 34 H 0.186 0.814 35 H 0.255 0.745 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.589 24.324 -2.012 24.669 hybrid contribution 0.025 -2.184 0.775 2.318 sum -3.564 22.140 -1.237 22.459 Atomic orbital electron populations 1.22788 0.69152 1.07935 1.06939 1.47548 1.10355 1.02093 1.50590 1.77913 0.97086 1.13133 1.12952 1.75325 1.08222 1.12162 1.20516 1.20534 0.94407 0.91147 1.05362 1.20210 0.98295 0.90680 0.98383 1.21133 0.95840 0.95513 0.97458 1.19639 0.94582 0.91567 1.05635 1.18325 0.84414 0.86530 0.76015 1.90780 1.23891 1.79171 1.51888 1.45662 1.09917 1.05910 1.73515 1.21162 0.95487 0.79024 1.02497 1.22766 0.91816 0.95193 0.88635 0.91390 1.21108 0.87187 0.88531 1.00089 1.44352 1.18531 1.39947 1.31028 1.19552 0.92265 1.08757 1.18776 0.90837 1.25823 0.96229 0.99396 1.03186 1.70179 1.03048 1.43797 1.41103 0.85242 0.77721 0.77616 0.79719 1.20967 1.22473 1.19187 1.21842 0.95401 0.95463 0.89791 1.23077 0.83657 0.92369 1.02876 1.87790 1.29113 1.70808 1.43010 1.20100 1.00776 0.87460 0.96894 1.19681 0.91240 0.91064 1.09756 0.87195 0.85951 0.86497 0.81312 0.81409 0.74495 0.90212 0.91928 0.91445 0.98193 0.93974 0.91053 0.96782 0.92515 0.86072 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.40 127.77 1.46 1.90 16 2 N -0.30 -5.22 3.80 -361.28 -1.37 -6.59 16 3 N -0.03 -0.66 13.07 37.02 0.48 -0.18 16 4 N -0.29 -7.11 12.42 -52.38 -0.65 -7.76 16 5 C 0.01 0.26 7.36 39.75 0.29 0.55 16 6 C -0.05 -0.86 10.03 22.19 0.22 -0.63 16 7 C -0.08 -1.17 9.46 22.27 0.21 -0.96 16 8 C -0.11 -2.16 5.88 -20.06 -0.12 -2.27 16 9 C 0.56 14.55 7.77 86.75 0.67 15.23 16 10 O -0.58 -19.35 16.32 -3.96 -0.06 -19.41 16 11 N -0.70 -17.06 5.40 -466.10 -2.52 -19.57 16 12 C 0.14 4.46 5.37 86.38 0.46 4.92 16 13 C 0.08 2.60 2.86 30.70 0.09 2.68 16 14 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 15 C 0.16 7.28 4.73 86.36 0.41 7.69 16 16 N -0.61 -29.59 3.05 -697.54 -2.13 -31.72 16 17 C -0.26 -13.90 9.65 84.03 0.81 -13.09 16 18 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 19 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 20 N -0.94 -54.12 11.14 21.65 0.24 -53.88 16 21 Si 0.97 43.44 29.59 68.60 2.03 45.47 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.10 3.87 6.73 86.35 0.58 4.45 16 26 C 0.06 1.70 6.98 72.08 0.50 2.20 16 27 O -0.39 -12.46 10.14 -148.98 -1.51 -13.97 16 28 C -0.03 -0.57 9.59 22.58 0.22 -0.36 16 29 C 0.00 0.03 6.93 39.02 0.27 0.31 16 30 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.12 0.38 8.14 -2.38 -0.02 0.37 16 33 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.17 1.58 6.36 -2.91 -0.02 1.56 16 35 H 0.42 7.79 6.35 -92.71 -0.59 7.20 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.07 3.50 6.14 -2.39 -0.01 3.48 16 39 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.07 2.58 7.96 -2.38 -0.02 2.56 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.12 2.69 8.14 -2.39 -0.02 2.68 16 45 H 0.15 2.68 7.63 -2.91 -0.02 2.66 16 Total: -1.00 -75.04 376.06 1.46 -73.58 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.45 Total: 13.75 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 6.50 Total: 20.29 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -5.94 Total: -119.70 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.57 Total: -33.38 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.04 1.46 -73.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035589215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.688 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds