Wall clock time and date at job start Wed Apr 1 2020 03:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40252 * 126.65976 * 2 1 4 4 N 1.28654 * 109.42328 * 179.97438 * 3 2 1 5 5 C 1.35399 * 110.10606 * 359.97438 * 4 3 2 6 6 C 1.40116 * 133.03200 * 180.02562 * 5 4 3 7 7 C 1.37598 * 120.15706 * 179.72060 * 6 5 4 8 8 C 1.38489 * 120.79533 * 0.52250 * 7 6 5 9 9 C 1.39216 * 120.27509 * 359.48002 * 8 7 6 10 10 C 1.47533 * 120.24189 * 180.28015 * 9 8 7 11 11 O 1.21584 * 119.99810 * 140.91322 * 10 9 8 12 12 N 1.34777 * 119.99895 * 320.90739 * 10 9 8 13 13 C 1.46497 * 119.99935 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47539 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.51411 * 59.99748 * 14 13 12 16 16 C 1.53290 * 109.51630 * 180.10384 * 14 13 12 17 17 N 1.47155 * 108.38656 * 172.22478 * 16 14 13 18 18 C 1.36934 * 120.98270 * 129.48350 * 17 16 14 19 19 H 1.08000 * 119.99984 * 208.31734 * 18 17 16 20 20 C 1.38818 * 120.00000 * 28.31556 * 18 17 16 21 21 N 1.31619 * 120.00123 * 13.54158 * 20 18 17 22 22 Si 1.86796 * 119.99940 * 193.53655 * 20 18 17 23 23 H 1.48500 * 109.46831 * 90.00397 * 22 20 18 24 24 H 1.48505 * 109.47142 * 210.00148 * 22 20 18 25 25 H 1.48493 * 109.47507 * 330.00422 * 22 20 18 26 26 C 1.47152 * 118.03253 * 309.46395 * 17 16 14 27 27 C 1.53293 * 108.38688 * 50.53545 * 26 17 16 28 28 O 1.42962 * 109.26296 * 307.72097 * 27 26 17 29 29 C 1.36970 * 126.66969 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47236 * 263.92842 * 1 2 3 31 31 H 1.08997 * 109.47517 * 23.93887 * 1 2 3 32 32 H 1.09003 * 109.46738 * 143.93722 * 1 2 3 33 33 H 1.08004 * 119.92344 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.60643 * 180.28102 * 7 6 5 35 35 H 1.08003 * 119.86343 * 179.75763 * 8 7 6 36 36 H 0.96995 * 120.00090 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47009 * 300.00401 * 13 12 10 38 38 H 1.09004 * 109.47135 * 60.00020 * 13 12 10 39 39 H 1.09000 * 109.67933 * 291.94667 * 16 14 13 40 40 H 1.08997 * 109.68444 * 52.46195 * 16 14 13 41 41 H 0.96993 * 120.00224 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.67723 * 170.25642 * 26 17 16 43 43 H 1.08999 * 109.68340 * 290.76959 * 26 17 16 44 44 H 1.08997 * 109.51279 * 67.61753 * 27 26 17 45 45 H 1.08996 * 109.51090 * 187.77106 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3024 1.1251 0.0000 4 7 3.5312 0.7439 0.0005 5 6 3.5989 -0.6084 0.0015 6 6 4.6697 -1.5121 0.0028 7 6 4.4307 -2.8672 0.0094 8 6 3.1360 -3.3587 0.0039 9 6 2.0531 -2.4839 0.0025 10 6 0.6741 -3.0084 0.0029 11 8 -0.1848 -2.4597 0.6659 12 7 0.3665 -4.0957 -0.7318 13 6 -1.0029 -4.6162 -0.7318 14 6 -1.0813 -5.8455 -1.6392 15 1 -0.4011 -6.6136 -1.2712 16 6 -2.5144 -6.3894 -1.6420 17 7 -2.6070 -7.4485 -2.6595 18 6 -3.1382 -8.6735 -2.3556 19 1 -2.8135 -9.5515 -2.8942 20 6 -4.0940 -8.7867 -1.3552 21 7 -4.6843 -7.7089 -0.8839 22 14 -4.5423 -10.4689 -0.6780 23 1 -3.6599 -10.7907 0.4722 24 1 -5.9578 -10.4604 -0.2288 25 1 -4.3659 -11.4928 -1.7389 26 6 -2.1122 -7.1520 -4.0133 27 6 -0.6986 -6.5710 -3.8950 28 8 -0.7129 -5.4799 -2.9713 29 6 2.2830 -1.0986 0.0005 30 1 -0.3634 -0.1087 1.0219 31 1 -0.3634 0.9392 -0.4170 32 1 -0.3633 -0.8308 -0.6050 33 1 5.6852 -1.1442 0.0028 34 1 5.2627 -3.5557 0.0150 35 1 2.9657 -4.4253 0.0052 36 1 1.0518 -4.5335 -1.2604 37 1 -1.2854 -4.8956 0.2832 38 1 -1.6834 -3.8484 -1.1000 39 1 -2.7528 -6.8008 -0.6612 40 1 -3.2113 -5.5866 -1.8825 41 1 -5.3518 -7.7879 -0.1847 42 1 -2.0843 -8.0685 -4.6027 43 1 -2.7690 -6.4267 -4.4935 44 1 -0.0170 -7.3420 -3.5360 45 1 -0.3676 -6.2172 -4.8713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035631995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:48 Heat of formation + Delta-G solvation = 65.032043 kcal Electronic energy + Delta-G solvation = -30068.105633 eV Core-core repulsion = 25895.849989 eV Total energy + Delta-G solvation = -4172.255644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.38789 -39.89259 -38.57109 -37.59718 -35.13229 -34.62266 -34.39090 -31.85031 -31.33115 -30.64530 -30.47305 -27.73980 -27.39017 -25.82396 -24.53304 -23.38930 -22.92485 -22.55988 -21.62056 -20.40736 -19.66852 -18.35759 -17.76738 -17.03706 -16.78622 -16.42075 -16.12707 -15.80398 -15.73594 -15.19756 -15.07567 -14.46695 -14.39786 -14.26723 -13.95395 -13.61683 -13.34591 -13.19834 -13.05456 -12.88096 -12.73700 -12.57470 -12.45830 -12.18466 -11.89062 -11.60621 -11.36659 -11.15976 -10.93842 -10.88709 -10.81884 -10.51009 -10.32389 -10.19706 -10.00713 -9.75013 -9.23701 -9.18474 -9.06696 -8.64780 -8.59943 -6.82326 -5.92695 -3.39865 -0.03535 0.92368 1.72569 1.89651 2.59005 3.01200 3.28476 3.31600 3.35572 3.37016 3.76288 4.12041 4.23664 4.33868 4.35992 4.41999 4.56782 4.77719 5.00526 5.08046 5.13634 5.21574 5.27323 5.40663 5.43857 5.48252 5.53363 5.57742 5.76056 5.80837 5.83195 5.88110 5.89618 6.00236 6.10675 6.17486 6.23519 6.32739 6.38258 6.48509 6.69833 6.97117 7.38198 7.40091 7.62793 7.72594 7.72817 8.04162 8.25921 9.02782 9.64464 10.22058 11.15252 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.002392 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.447884 B =11701.668168 C =12002.740449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.379 5.379 3 N -0.008 5.008 4 N -0.221 5.221 5 C -0.027 4.027 6 C -0.012 4.012 7 C -0.142 4.142 8 C -0.033 4.033 9 C -0.130 4.130 10 C 0.554 3.446 11 O -0.539 6.539 12 N -0.706 5.706 13 C 0.131 3.869 14 C 0.054 3.946 15 H 0.057 0.943 16 C 0.154 3.846 17 N -0.594 5.594 18 C -0.258 4.258 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.108 3.892 27 C 0.051 3.949 28 O -0.391 6.391 29 C 0.127 3.873 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.405 0.595 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.257 0.743 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.044 0.956 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.911 9.350 0.483 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.172 5.172 3 N 0.012 4.988 4 N -0.099 5.099 5 C -0.151 4.151 6 C -0.035 4.035 7 C -0.163 4.163 8 C -0.055 4.055 9 C -0.138 4.138 10 C 0.340 3.660 11 O -0.418 6.418 12 N -0.356 5.356 13 C 0.008 3.992 14 C -0.006 4.006 15 H 0.075 0.925 16 C 0.027 3.973 17 N -0.318 5.318 18 C -0.387 4.387 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.027 4.027 28 O -0.310 6.310 29 C 0.003 3.997 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.240 0.760 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.071 11.476 1.007 19.773 hybrid contribution -0.395 -2.383 0.162 2.421 sum 15.675 9.093 1.169 18.160 Atomic orbital electron populations 1.22303 0.71426 1.04488 1.05432 1.50138 1.08510 1.02995 1.55577 1.81649 0.94008 1.07765 1.15426 1.74857 1.11517 1.10155 1.13364 1.19912 0.92925 0.90375 1.11896 1.20621 0.97611 0.91401 0.93841 1.20933 0.97030 0.94773 1.03552 1.21395 0.91309 0.99674 0.93150 1.18910 0.94626 0.89467 1.10771 1.18043 0.87212 0.80695 0.80055 1.90799 1.49538 1.58764 1.42672 1.45950 1.13073 1.29347 1.47258 1.21512 0.81926 0.95832 0.99924 1.23172 1.00823 0.94295 0.82287 0.92519 1.21298 0.88800 0.90955 0.96245 1.44018 1.71618 1.12294 1.03851 1.19190 1.16439 0.84506 1.18572 0.91377 1.25135 0.95977 0.97249 1.01101 1.69975 1.27438 1.27165 1.30109 0.86220 0.77524 0.83490 0.79101 1.21289 1.21564 1.20359 1.21611 0.92794 0.98408 0.88975 1.23010 0.98389 0.89238 0.92109 1.87772 1.89780 1.34351 1.19146 1.18968 0.91063 0.89225 1.00483 0.88916 0.89195 0.88403 0.83951 0.83756 0.83779 0.76043 0.89587 0.90509 0.88553 0.95061 0.93330 0.91926 0.95538 0.93813 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 9.67 59.85 0.58 1.75 16 2 N -0.38 -5.02 4.10 -65.28 -0.27 -5.29 16 3 N -0.01 -0.12 13.72 60.35 0.83 0.71 16 4 N -0.22 -3.02 12.40 32.15 0.40 -2.62 16 5 C -0.03 -0.32 7.26 -84.76 -0.62 -0.94 16 6 C -0.01 -0.10 10.09 -39.11 -0.39 -0.50 16 7 C -0.14 -0.94 9.98 -39.72 -0.40 -1.34 16 8 C -0.03 -0.27 9.33 -39.13 -0.36 -0.63 16 9 C -0.13 -1.48 5.77 -104.92 -0.61 -2.09 16 10 C 0.55 7.28 6.68 -12.47 -0.08 7.19 16 11 O -0.54 -8.42 13.15 5.29 0.07 -8.35 16 12 N -0.71 -8.78 5.37 -61.35 -0.33 -9.11 16 13 C 0.13 1.97 5.37 -4.05 -0.02 1.95 16 14 C 0.05 0.92 2.86 -26.58 -0.08 0.85 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 16 C 0.15 3.41 4.70 -3.53 -0.02 3.39 16 17 N -0.59 -14.12 3.04 -171.83 -0.52 -14.65 16 18 C -0.26 -6.72 9.65 -15.06 -0.15 -6.86 16 19 H 0.07 1.74 7.87 -52.49 -0.41 1.32 16 20 C 0.00 0.12 5.01 -17.43 -0.09 0.03 16 21 N -0.90 -25.04 11.08 55.49 0.62 -24.43 16 22 Si 0.91 20.76 29.57 -169.99 -5.03 15.74 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.11 2.14 6.74 -3.53 -0.02 2.12 16 27 C 0.05 0.82 6.98 37.31 0.26 1.08 16 28 O -0.39 -6.66 10.14 -35.23 -0.36 -7.02 16 29 C 0.13 1.63 6.80 -83.92 -0.57 1.06 16 30 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.18 6.04 -51.93 -0.31 0.87 16 33 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 35 H 0.14 0.83 7.79 -52.48 -0.41 0.42 16 36 H 0.40 4.28 7.73 -40.82 -0.32 3.96 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.10 2.37 6.19 -51.93 -0.32 2.05 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -32.06 371.61 -7.50 -39.57 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.95 Total: 2.79 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -2.56 Total: 7.06 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.72 Total: -55.39 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.29 Total: -15.37 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.06 -7.50 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035631995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.599 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds