Wall clock time and date at job start Wed Apr 1 2020 03:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00311 * 2 1 4 4 O 1.21581 * 120.00009 * 175.28441 * 3 2 1 5 5 C 1.47690 * 120.00007 * 355.29485 * 3 2 1 6 6 C 1.39984 * 120.37573 * 221.75731 * 5 3 2 7 7 N 1.31390 * 121.15044 * 179.70706 * 6 5 3 8 8 C 1.32543 * 121.79551 * 0.61614 * 7 6 5 9 9 C 1.40796 * 120.61838 * 359.65474 * 8 7 6 10 10 C 1.39491 * 119.14234 * 0.03147 * 9 8 7 11 11 N 1.35779 * 107.11362 * 180.02562 * 9 8 7 12 12 C 1.30064 * 109.43042 * 359.97438 * 11 9 8 13 13 N 1.36169 * 110.11393 * 0.02562 * 12 11 9 14 14 C 1.46501 * 126.23554 * 180.02562 * 13 12 11 15 15 C 1.46497 * 119.99662 * 180.02562 * 2 1 3 16 16 H 1.09005 * 110.64112 * 178.30959 * 15 2 1 17 17 C 1.54329 * 110.72106 * 301.44911 * 15 2 1 18 18 N 1.47018 * 107.27441 * 140.73284 * 17 15 2 19 19 C 1.36933 * 125.65165 * 181.01962 * 18 17 15 20 20 H 1.08001 * 119.99695 * 11.33241 * 19 18 17 21 21 C 1.38808 * 120.00362 * 191.32943 * 19 18 17 22 22 N 1.31617 * 119.99806 * 32.50833 * 21 19 18 23 23 Si 1.86800 * 120.00259 * 212.23134 * 21 19 18 24 24 H 1.48495 * 109.47208 * 180.27429 * 23 21 19 25 25 H 1.48498 * 109.46976 * 300.27793 * 23 21 19 26 26 H 1.48504 * 109.46938 * 60.27495 * 23 21 19 27 27 C 1.47431 * 108.70011 * 1.29284 * 18 17 15 28 28 C 1.55126 * 104.72265 * 335.54601 * 27 18 17 29 29 H 1.09003 * 111.19783 * 279.20024 * 28 27 18 30 30 O 1.42898 * 110.93862 * 155.29117 * 28 27 18 31 31 H 1.09002 * 109.46705 * 275.55686 * 1 2 3 32 32 H 1.08997 * 109.47240 * 35.54538 * 1 2 3 33 33 H 1.08994 * 109.47394 * 155.55281 * 1 2 3 34 34 H 1.07995 * 119.42352 * 359.97438 * 6 5 3 35 35 H 1.07998 * 120.97550 * 180.02562 * 10 9 8 36 36 H 1.07996 * 124.94168 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47106 * 89.97582 * 14 13 12 38 38 H 1.08997 * 109.46908 * 209.97183 * 14 13 12 39 39 H 1.08995 * 109.47211 * 329.97940 * 14 13 12 40 40 H 1.09001 * 109.88273 * 21.31402 * 17 15 2 41 41 H 1.09005 * 109.87957 * 260.15302 * 17 15 2 42 42 H 0.97005 * 120.00309 * 0.09170 * 22 21 19 43 43 H 1.08995 * 110.37185 * 94.48457 * 27 18 17 44 44 H 1.09010 * 110.36261 * 216.80397 * 27 18 17 45 45 H 0.96700 * 114.00176 * 67.96059 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1689 0.0866 5 6 1.4043 2.4441 -0.1049 6 6 1.8882 3.4742 -0.9198 7 7 1.2440 4.6142 -1.0288 8 6 0.1190 4.8466 -0.3677 9 6 -0.4320 3.8645 0.4774 10 6 0.2219 2.6397 0.6122 11 7 -1.5680 4.3857 1.0080 12 6 -1.7433 5.5921 0.5548 13 7 -0.7332 5.9242 -0.2959 14 6 -0.5812 7.1973 -1.0046 15 6 2.1974 -1.2687 -0.0006 16 1 3.2726 -1.0918 -0.0306 17 6 1.8182 -2.1187 1.2305 18 7 1.7364 -3.5179 0.7865 19 6 1.4058 -4.5874 1.5751 20 1 1.0020 -4.4251 2.5636 21 6 1.5894 -5.8801 1.1041 22 7 2.5848 -6.1470 0.2854 23 14 0.4285 -7.2427 1.6383 24 1 0.8412 -8.5210 1.0054 25 1 0.4771 -7.3834 3.1158 26 1 -0.9557 -6.9065 1.2183 27 6 2.0758 -3.5796 -0.6469 28 6 1.7547 -2.1622 -1.1894 29 1 0.6890 -2.0482 -1.3880 30 8 2.5244 -1.8767 -2.3590 31 1 -0.3633 0.0995 1.0229 32 1 -0.3633 0.8361 -0.5974 33 1 -0.3634 -0.9355 -0.4253 34 1 2.8048 3.3279 -1.4719 35 1 -0.1748 1.8654 1.2521 36 1 -2.5702 6.2364 0.8146 37 1 -0.0025 7.8879 -0.3911 38 1 -0.0629 7.0281 -1.9484 39 1 -1.5650 7.6232 -1.2015 40 1 0.8526 -1.7965 1.6203 41 1 2.5833 -2.0181 2.0003 42 1 3.1909 -5.4406 0.0122 43 1 3.1337 -3.8075 -0.7768 44 1 1.4614 -4.3261 -1.1503 45 1 2.2836 -2.4107 -3.1284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047483491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:01 Heat of formation + Delta-G solvation = 59.887336 kcal Electronic energy + Delta-G solvation = -30221.524837 eV Core-core repulsion = 26049.046102 eV Total energy + Delta-G solvation = -4172.478735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.75186 -40.35182 -38.64016 -37.67794 -35.47054 -35.15786 -34.81947 -32.67713 -31.66260 -30.17853 -28.54873 -27.77238 -27.62444 -26.76133 -24.62932 -24.40538 -23.62700 -21.43887 -20.85754 -20.53676 -19.25028 -18.49849 -17.74142 -17.65446 -17.38923 -16.79752 -16.55915 -16.03269 -15.82179 -15.16938 -14.78665 -14.46239 -14.16458 -14.06537 -13.97718 -13.69513 -13.55088 -13.52664 -13.22305 -13.04148 -12.88024 -12.66153 -12.54646 -12.23621 -12.07854 -11.72361 -11.39629 -11.34212 -11.05888 -10.79784 -10.56130 -10.22022 -10.12148 -10.04640 -9.84794 -9.53520 -9.42933 -9.03645 -8.92480 -8.51969 -8.37438 -7.04042 -6.23397 -3.15481 0.40188 0.61891 1.88837 2.35358 2.67406 2.91827 3.47049 3.47591 3.51035 3.65802 3.69416 3.86574 4.11460 4.32110 4.41267 4.51897 4.54463 4.57548 4.64145 4.70889 4.93580 5.02058 5.06440 5.12116 5.23865 5.32433 5.44371 5.45750 5.49652 5.58007 5.63661 5.74670 5.78827 5.87735 5.92962 6.15149 6.36232 6.45897 6.50592 6.69600 6.76911 6.87007 7.26918 7.36857 7.48692 7.67762 7.95165 8.13949 8.42012 8.92677 9.75600 10.26595 11.15191 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.002440 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.426573 B =11474.544736 C =12233.791479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.592 5.592 3 C 0.571 3.429 4 O -0.527 6.527 5 C -0.186 4.186 6 C 0.194 3.806 7 N -0.485 5.485 8 C 0.252 3.748 9 C -0.008 4.008 10 C 0.015 3.985 11 N -0.480 5.480 12 C 0.271 3.729 13 N -0.486 5.486 14 C 0.081 3.919 15 C 0.138 3.862 16 H 0.116 0.884 17 C 0.132 3.868 18 N -0.597 5.597 19 C -0.347 4.347 20 H 0.071 0.929 21 C -0.024 4.024 22 N -0.911 5.911 23 Si 1.067 2.933 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.294 1.294 27 C 0.120 3.880 28 C 0.073 3.927 29 H 0.067 0.933 30 O -0.560 6.560 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.224 0.776 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.270 0.730 43 H 0.038 0.962 44 H 0.058 0.942 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 25.810 -4.867 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.324 5.324 3 C 0.358 3.642 4 O -0.404 6.404 5 C -0.194 4.194 6 C 0.025 3.975 7 N -0.197 5.197 8 C 0.017 3.983 9 C -0.127 4.127 10 C -0.013 4.013 11 N -0.198 5.198 12 C -0.015 4.015 13 N -0.179 5.179 14 C -0.061 4.061 15 C 0.035 3.965 16 H 0.134 0.866 17 C 0.005 3.995 18 N -0.326 5.326 19 C -0.474 4.474 20 H 0.089 0.911 21 C -0.226 4.226 22 N -0.552 5.552 23 Si 0.896 3.104 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.221 1.221 27 C -0.007 4.007 28 C 0.012 3.988 29 H 0.085 0.915 30 O -0.364 6.364 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.194 0.806 35 H 0.172 0.828 36 H 0.240 0.760 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.798 24.928 -4.520 27.163 hybrid contribution 0.088 1.177 -0.117 1.186 sum -9.710 26.105 -4.638 28.236 Atomic orbital electron populations 1.22093 0.79687 1.03752 1.01868 1.47646 1.06930 1.05566 1.72240 1.17852 0.86871 0.82827 0.76685 1.90813 1.13260 1.86881 1.49422 1.20674 0.97507 0.97353 1.03866 1.22671 0.96849 0.84873 0.93091 1.66461 1.06487 1.23203 1.23546 1.19139 0.92588 0.88835 0.97749 1.19502 0.95978 0.96027 1.01206 1.21205 0.90745 0.94296 0.95011 1.70510 1.16324 1.07660 1.25311 1.25494 0.92542 0.93770 0.89721 1.45060 1.20470 1.13252 1.39129 1.22052 1.04036 0.82039 0.97972 1.22168 0.98376 0.81284 0.94690 0.86621 1.21567 0.98780 0.85614 0.93536 1.44403 1.82150 1.01679 1.04411 1.19702 1.41832 0.85325 1.00525 0.91116 1.25766 0.99162 0.97473 1.00216 1.70836 1.11546 1.34877 1.37892 0.83474 0.75589 0.75805 0.75505 1.21106 1.21915 1.22099 1.22192 0.99145 0.93077 0.86278 1.23547 0.93973 0.96191 0.85063 0.91529 1.86479 1.63306 1.65230 1.21402 0.91854 0.91099 0.89958 0.80646 0.82792 0.76019 0.90449 0.89103 0.89107 0.94642 0.94827 0.91849 0.94466 0.92406 0.77733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 7.70 59.85 0.46 1.31 16 2 N -0.59 -9.23 2.89 -173.00 -0.50 -9.73 16 3 C 0.57 9.12 7.33 -12.40 -0.09 9.03 16 4 O -0.53 -10.20 16.34 5.29 0.09 -10.11 16 5 C -0.19 -2.45 5.15 -104.85 -0.54 -2.99 16 6 C 0.19 2.40 10.80 -17.09 -0.18 2.22 16 7 N -0.48 -5.95 10.36 -11.96 -0.12 -6.07 16 8 C 0.25 2.92 7.99 -155.64 -1.24 1.67 16 9 C -0.01 -0.09 7.23 -84.69 -0.61 -0.70 16 10 C 0.01 0.18 7.79 -38.58 -0.30 -0.12 16 11 N -0.48 -5.29 11.29 -12.02 -0.14 -5.42 16 12 C 0.27 1.92 12.50 -89.70 -1.12 0.80 16 13 N -0.49 -3.85 3.19 -124.99 -0.40 -4.25 16 14 C 0.08 0.30 11.18 59.85 0.67 0.97 16 15 C 0.14 2.59 3.08 -66.09 -0.20 2.38 16 16 H 0.12 2.43 7.01 -51.93 -0.36 2.07 16 17 C 0.13 2.77 6.88 -3.06 -0.02 2.75 16 18 N -0.60 -14.91 3.34 -169.93 -0.57 -15.48 16 19 C -0.35 -9.64 10.01 -15.06 -0.15 -9.79 16 20 H 0.07 1.96 8.00 -52.49 -0.42 1.54 16 21 C -0.02 -0.67 4.99 -17.43 -0.09 -0.76 16 22 N -0.91 -27.22 12.97 55.49 0.72 -26.50 16 23 Si 1.07 24.94 30.02 -169.99 -5.10 19.84 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.12 2.72 4.99 -2.41 -0.01 2.71 16 28 C 0.07 1.33 3.95 -24.46 -0.10 1.23 16 29 H 0.07 1.12 6.17 -51.93 -0.32 0.80 16 30 O -0.56 -9.54 13.47 -35.23 -0.47 -10.02 16 31 H 0.06 0.70 6.81 -51.93 -0.35 0.35 16 32 H 0.07 0.76 6.03 -51.93 -0.31 0.45 16 33 H 0.08 1.04 6.15 -51.93 -0.32 0.72 16 34 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.15 1.69 5.64 -52.49 -0.30 1.39 16 36 H 0.22 0.40 8.06 -52.49 -0.42 -0.03 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.04 0.71 7.07 -51.93 -0.37 0.34 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.27 8.12 5.94 -40.82 -0.24 7.87 16 43 H 0.04 0.93 6.93 -51.93 -0.36 0.57 16 44 H 0.06 1.40 7.74 -51.92 -0.40 0.99 16 45 H 0.38 4.75 9.12 45.56 0.42 5.17 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -37.53 368.02 -9.16 -46.68 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.67 Total: 4.80 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -3.53 Total: 10.72 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -1.01 Total: -67.45 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.39 Total: -20.13 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.10 Total: 19.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.53 -9.16 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047483491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.571 kcal (2) G-P(sol) polarization free energy of solvation -37.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds