Wall clock time and date at job start Wed Apr 1 2020 03:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00311 * 2 1 4 4 O 1.21581 * 120.00009 * 175.28441 * 3 2 1 5 5 C 1.47690 * 120.00007 * 355.29485 * 3 2 1 6 6 C 1.39984 * 120.37573 * 221.75731 * 5 3 2 7 7 N 1.31390 * 121.15044 * 179.70706 * 6 5 3 8 8 C 1.32543 * 121.79551 * 0.61614 * 7 6 5 9 9 C 1.40796 * 120.61838 * 359.65474 * 8 7 6 10 10 C 1.39491 * 119.14234 * 0.03147 * 9 8 7 11 11 N 1.35779 * 107.11362 * 180.02562 * 9 8 7 12 12 C 1.30064 * 109.43042 * 359.97438 * 11 9 8 13 13 N 1.36169 * 110.11393 * 0.02562 * 12 11 9 14 14 C 1.46501 * 126.23554 * 180.02562 * 13 12 11 15 15 C 1.46497 * 119.99662 * 180.02562 * 2 1 3 16 16 H 1.09005 * 110.64112 * 178.30959 * 15 2 1 17 17 C 1.54329 * 110.72106 * 301.44911 * 15 2 1 18 18 N 1.47018 * 107.27441 * 140.73284 * 17 15 2 19 19 C 1.36933 * 125.65165 * 181.01962 * 18 17 15 20 20 H 1.08001 * 119.99695 * 11.33241 * 19 18 17 21 21 C 1.38808 * 120.00362 * 191.32943 * 19 18 17 22 22 N 1.31617 * 119.99806 * 32.50833 * 21 19 18 23 23 Si 1.86800 * 120.00259 * 212.23134 * 21 19 18 24 24 H 1.48495 * 109.47208 * 180.27429 * 23 21 19 25 25 H 1.48498 * 109.46976 * 300.27793 * 23 21 19 26 26 H 1.48504 * 109.46938 * 60.27495 * 23 21 19 27 27 C 1.47431 * 108.70011 * 1.29284 * 18 17 15 28 28 C 1.55126 * 104.72265 * 335.54601 * 27 18 17 29 29 H 1.09003 * 111.19783 * 279.20024 * 28 27 18 30 30 O 1.42898 * 110.93862 * 155.29117 * 28 27 18 31 31 H 1.09002 * 109.46705 * 275.55686 * 1 2 3 32 32 H 1.08997 * 109.47240 * 35.54538 * 1 2 3 33 33 H 1.08994 * 109.47394 * 155.55281 * 1 2 3 34 34 H 1.07995 * 119.42352 * 359.97438 * 6 5 3 35 35 H 1.07998 * 120.97550 * 180.02562 * 10 9 8 36 36 H 1.07996 * 124.94168 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47106 * 89.97582 * 14 13 12 38 38 H 1.08997 * 109.46908 * 209.97183 * 14 13 12 39 39 H 1.08995 * 109.47211 * 329.97940 * 14 13 12 40 40 H 1.09001 * 109.88273 * 21.31402 * 17 15 2 41 41 H 1.09005 * 109.87957 * 260.15302 * 17 15 2 42 42 H 0.97005 * 120.00309 * 0.09170 * 22 21 19 43 43 H 1.08995 * 110.37185 * 94.48457 * 27 18 17 44 44 H 1.09010 * 110.36261 * 216.80397 * 27 18 17 45 45 H 0.96700 * 114.00176 * 67.96059 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1689 0.0866 5 6 1.4043 2.4441 -0.1049 6 6 1.8882 3.4742 -0.9198 7 7 1.2440 4.6142 -1.0288 8 6 0.1190 4.8466 -0.3677 9 6 -0.4320 3.8645 0.4774 10 6 0.2219 2.6397 0.6122 11 7 -1.5680 4.3857 1.0080 12 6 -1.7433 5.5921 0.5548 13 7 -0.7332 5.9242 -0.2959 14 6 -0.5812 7.1973 -1.0046 15 6 2.1974 -1.2687 -0.0006 16 1 3.2726 -1.0918 -0.0306 17 6 1.8182 -2.1187 1.2305 18 7 1.7364 -3.5179 0.7865 19 6 1.4058 -4.5874 1.5751 20 1 1.0020 -4.4251 2.5636 21 6 1.5894 -5.8801 1.1041 22 7 2.5848 -6.1470 0.2854 23 14 0.4285 -7.2427 1.6383 24 1 0.8412 -8.5210 1.0054 25 1 0.4771 -7.3834 3.1158 26 1 -0.9557 -6.9065 1.2183 27 6 2.0758 -3.5796 -0.6469 28 6 1.7547 -2.1622 -1.1894 29 1 0.6890 -2.0482 -1.3880 30 8 2.5244 -1.8767 -2.3590 31 1 -0.3633 0.0995 1.0229 32 1 -0.3633 0.8361 -0.5974 33 1 -0.3634 -0.9355 -0.4253 34 1 2.8048 3.3279 -1.4719 35 1 -0.1748 1.8654 1.2521 36 1 -2.5702 6.2364 0.8146 37 1 -0.0025 7.8879 -0.3911 38 1 -0.0629 7.0281 -1.9484 39 1 -1.5650 7.6232 -1.2015 40 1 0.8526 -1.7965 1.6203 41 1 2.5833 -2.0181 2.0003 42 1 3.1909 -5.4406 0.0122 43 1 3.1337 -3.8075 -0.7768 44 1 1.4614 -4.3261 -1.1503 45 1 2.2836 -2.4107 -3.1284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047483491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:00 Heat of formation + Delta-G solvation = 32.241788 kcal Electronic energy + Delta-G solvation = -30222.723638 eV Core-core repulsion = 26049.046102 eV Total energy + Delta-G solvation = -4173.677536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.48890 -41.60849 -39.93322 -38.88349 -36.91316 -36.65828 -35.58200 -34.18258 -33.00709 -31.02419 -30.25582 -29.28792 -28.35175 -27.86187 -26.31240 -25.30042 -24.78028 -22.50164 -22.32461 -21.86756 -20.56991 -19.68816 -19.42521 -18.65829 -18.50748 -17.91163 -17.51311 -17.17075 -16.75776 -16.37128 -16.17479 -15.89322 -15.56865 -15.37279 -15.14940 -14.92132 -14.72367 -14.50050 -14.36371 -14.16910 -14.03594 -13.78026 -13.52495 -13.45486 -13.42646 -13.17226 -13.03356 -12.62203 -12.47807 -12.12353 -11.89435 -11.85225 -11.81235 -11.75260 -11.34250 -11.06933 -10.49488 -10.39492 -9.91941 -9.78823 -9.69775 -9.10691 -8.45329 -5.33790 -0.44842 -0.26906 1.28778 1.45242 1.59331 1.65302 1.67849 1.73447 1.86850 2.56385 2.60329 2.83728 2.92653 3.15937 3.18883 3.44861 3.49316 3.50584 3.63331 3.66305 3.82397 3.91270 3.97374 4.07659 4.10862 4.24653 4.25698 4.32268 4.43319 4.48713 4.70493 4.71517 4.72955 4.74379 4.79277 4.84175 4.91087 4.99127 5.01689 5.27588 5.35966 5.60648 5.89684 6.14606 6.24292 6.59166 6.61110 6.72412 6.79299 6.88859 7.64810 8.18810 8.93244 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.002440 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.426573 B =11474.544736 C =12233.791479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.590 5.590 3 C 0.573 3.427 4 O -0.569 6.569 5 C -0.192 4.192 6 C 0.185 3.815 7 N -0.490 5.490 8 C 0.236 3.764 9 C -0.020 4.020 10 C 0.016 3.984 11 N -0.519 5.519 12 C 0.297 3.703 13 N -0.484 5.484 14 C 0.074 3.926 15 C 0.150 3.850 16 H 0.088 0.912 17 C 0.133 3.867 18 N -0.617 5.617 19 C -0.355 4.355 20 H 0.068 0.932 21 C -0.076 4.076 22 N -0.940 5.940 23 Si 1.121 2.879 24 H -0.293 1.293 25 H -0.276 1.276 26 H -0.275 1.275 27 C 0.126 3.874 28 C 0.096 3.904 29 H 0.094 0.906 30 O -0.566 6.566 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.180 0.820 35 H 0.163 0.837 36 H 0.278 0.722 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.056 0.944 41 H 0.015 0.985 42 H 0.254 0.746 43 H 0.007 0.993 44 H 0.040 0.960 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 28.437 -4.904 31.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.320 5.320 3 C 0.362 3.638 4 O -0.449 6.449 5 C -0.201 4.201 6 C 0.016 3.984 7 N -0.202 5.202 8 C -0.001 4.001 9 C -0.140 4.140 10 C -0.011 4.011 11 N -0.238 5.238 12 C 0.011 3.989 13 N -0.175 5.175 14 C -0.066 4.066 15 C 0.045 3.955 16 H 0.106 0.894 17 C 0.007 3.993 18 N -0.345 5.345 19 C -0.483 4.483 20 H 0.086 0.914 21 C -0.272 4.272 22 N -0.582 5.582 23 Si 0.944 3.056 24 H -0.219 1.219 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.001 4.001 28 C 0.036 3.964 29 H 0.111 0.889 30 O -0.373 6.373 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.196 0.804 35 H 0.180 0.820 36 H 0.293 0.707 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.058 0.942 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -13.259 27.620 -4.578 30.978 hybrid contribution 1.099 0.572 -0.082 1.242 sum -12.160 28.192 -4.660 31.055 Atomic orbital electron populations 1.22328 0.77287 1.04602 1.03392 1.47623 1.08215 1.04221 1.71953 1.18250 0.86461 0.83631 0.75488 1.90786 1.15236 1.87518 1.51361 1.20317 0.98171 0.96042 1.05530 1.22714 0.97218 0.85001 0.93442 1.66488 1.06992 1.22868 1.23866 1.19496 0.92733 0.90274 0.97616 1.19694 0.96662 0.96154 1.01485 1.21232 0.90250 0.94901 0.94700 1.70527 1.16403 1.09718 1.27114 1.26633 0.92360 0.92887 0.86989 1.45462 1.19531 1.13506 1.39017 1.22388 1.06601 0.80321 0.97272 1.21702 0.97330 0.82548 0.93901 0.89404 1.21623 0.99072 0.84346 0.94230 1.44643 1.81990 1.02588 1.05314 1.19981 1.40973 0.86439 1.00883 0.91365 1.27226 0.99681 1.00201 1.00100 1.70961 1.12863 1.34437 1.39969 0.82779 0.74196 0.72614 0.75986 1.21940 1.20147 1.20053 1.22087 0.96849 0.95590 0.85571 1.23252 0.95282 0.92667 0.85249 0.88897 1.86452 1.63523 1.65572 1.21777 0.90242 0.89171 0.89867 0.80350 0.81982 0.70711 0.89398 0.90095 0.85146 0.92595 0.96722 0.93497 0.97570 0.94154 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 7.70 127.77 0.98 2.47 16 2 N -0.59 -18.17 2.89 -819.52 -2.36 -20.54 16 3 C 0.57 18.55 7.33 86.74 0.64 19.18 16 4 O -0.57 -22.93 16.34 -3.97 -0.06 -23.00 16 5 C -0.19 -5.03 5.15 -20.01 -0.10 -5.13 16 6 C 0.19 4.60 10.80 85.18 0.92 5.52 16 7 N -0.49 -11.65 10.36 -191.76 -1.99 -13.63 16 8 C 0.24 5.05 7.99 133.91 1.07 6.12 16 9 C -0.02 -0.46 7.23 39.46 0.29 -0.18 16 10 C 0.02 0.38 7.79 22.92 0.18 0.56 16 11 N -0.52 -10.02 11.29 -191.93 -2.17 -12.19 16 12 C 0.30 2.98 12.50 180.03 2.25 5.23 16 13 N -0.48 -6.06 3.19 -549.36 -1.75 -7.81 16 14 C 0.07 0.28 11.18 127.77 1.43 1.71 16 15 C 0.15 5.72 3.08 46.18 0.14 5.86 16 16 H 0.09 3.88 7.01 -2.38 -0.02 3.86 16 17 C 0.13 5.72 6.88 86.73 0.60 6.31 16 18 N -0.62 -31.49 3.34 -691.53 -2.31 -33.80 16 19 C -0.36 -20.02 10.01 84.03 0.84 -19.18 16 20 H 0.07 3.80 8.00 -2.91 -0.02 3.78 16 21 C -0.08 -4.33 4.99 84.86 0.42 -3.90 16 22 N -0.94 -57.88 12.97 21.65 0.28 -57.60 16 23 Si 1.12 50.35 30.02 68.60 2.06 52.41 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 C 0.13 5.91 4.99 86.93 0.43 6.34 16 28 C 0.10 3.51 3.95 32.06 0.13 3.63 16 29 H 0.09 2.95 6.17 -2.39 -0.01 2.94 16 30 O -0.57 -19.11 13.47 -148.98 -2.01 -21.12 16 31 H 0.08 1.58 6.81 -2.39 -0.02 1.56 16 32 H 0.09 1.75 6.03 -2.39 -0.01 1.73 16 33 H 0.08 1.90 6.15 -2.39 -0.01 1.89 16 34 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.16 3.32 5.64 -2.91 -0.02 3.31 16 36 H 0.28 -0.70 8.06 -2.91 -0.02 -0.73 16 37 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.06 2.18 7.07 -2.39 -0.02 2.16 16 41 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.25 16.07 5.94 -92.70 -0.55 15.52 16 43 H 0.01 0.35 6.93 -2.39 -0.02 0.33 16 44 H 0.04 2.01 7.74 -2.38 -0.02 1.99 16 45 H 0.40 9.66 9.12 -74.06 -0.68 8.98 16 Total: -1.00 -85.32 368.02 0.50 -84.82 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.60 Total: 17.92 kcal Atomic # 6 Polarization: 24.33 SS G_CDS: 10.21 Total: 34.54 kcal Atomic # 7 Polarization: -135.27 SS G_CDS: -10.30 Total: -145.57 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -2.07 Total: -44.12 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.06 Total: 52.41 kcal Total: -85.32 0.50 -84.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047483491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.061 kcal (2) G-P(sol) polarization free energy of solvation -85.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds