Wall clock time and date at job start Wed Apr 1 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36255 * 126.29565 * 2 1 4 4 N 1.30134 * 110.04898 * 180.02562 * 3 2 1 5 5 C 1.35699 * 109.50187 * 0.02562 * 4 3 2 6 6 C 1.39481 * 134.43320 * 180.02562 * 5 4 3 7 7 N 1.31763 * 120.63376 * 179.97438 * 6 5 4 8 8 C 1.31944 * 122.59747 * 0.02562 * 7 6 5 9 9 C 1.39369 * 121.02046 * 0.02562 * 8 7 6 10 10 C 1.47536 * 120.75281 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00197 * 221.01739 * 10 9 8 12 12 N 1.34773 * 120.00081 * 41.01799 * 10 9 8 13 13 C 1.46505 * 120.00236 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47053 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.67753 * 59.78367 * 14 13 12 16 16 C 1.53293 * 109.68027 * 180.33532 * 14 13 12 17 17 O 1.42966 * 109.22478 * 172.02629 * 16 14 13 18 18 C 1.42957 * 114.16542 * 297.42138 * 17 16 14 19 19 C 1.53300 * 109.22199 * 62.57854 * 18 17 16 20 20 N 1.47148 * 108.38561 * 307.69500 * 19 18 17 21 21 C 1.36937 * 120.98063 * 230.80916 * 20 19 18 22 22 H 1.08008 * 119.99603 * 145.27692 * 21 20 19 23 23 C 1.38807 * 120.00043 * 325.27441 * 21 20 19 24 24 N 1.31618 * 120.00104 * 357.52116 * 23 21 20 25 25 Si 1.86801 * 119.99800 * 177.52134 * 23 21 20 26 26 H 1.48497 * 109.47122 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47418 * 120.00223 * 25 23 21 28 28 H 1.48504 * 109.47083 * 239.99896 * 25 23 21 29 29 C 1.36921 * 126.30233 * 180.34991 * 2 1 3 30 30 H 1.08998 * 109.47144 * 97.07263 * 1 2 3 31 31 H 1.09000 * 109.47155 * 217.06605 * 1 2 3 32 32 H 1.09003 * 109.47454 * 337.06624 * 1 2 3 33 33 H 1.07998 * 124.98010 * 0.06283 * 3 2 1 34 34 H 1.08003 * 119.67679 * 359.96400 * 6 5 4 35 35 H 1.08003 * 119.48607 * 179.97438 * 8 7 6 36 36 H 0.97001 * 120.00100 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.46049 * 60.00775 * 13 12 10 38 38 H 1.08993 * 109.47530 * 300.01181 * 13 12 10 39 39 H 1.09005 * 109.51349 * 291.95408 * 16 14 13 40 40 H 1.09000 * 109.51345 * 52.05502 * 16 14 13 41 41 H 1.09001 * 109.51229 * 182.50048 * 18 17 16 42 42 H 1.08996 * 109.51668 * 302.65263 * 18 17 16 43 43 H 1.09001 * 109.67855 * 187.96919 * 19 18 17 44 44 H 1.09001 * 109.67783 * 67.42310 * 19 18 17 45 45 H 0.97004 * 120.00230 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2715 1.0982 0.0000 4 7 3.5209 0.7341 -0.0005 5 6 3.5980 -0.6207 -0.0015 6 6 4.6478 -1.5390 -0.0019 7 7 4.4067 -2.8344 -0.0024 8 6 3.1838 -3.3298 -0.0030 9 6 2.0696 -2.4925 -0.0037 10 6 0.7048 -3.0529 -0.0049 11 8 -0.1588 -2.5486 -0.6965 12 7 0.4153 -4.1236 0.7606 13 6 -0.9401 -4.6797 0.7599 14 6 -0.9994 -5.8801 1.7066 15 1 -0.7352 -5.5649 2.7160 16 6 -2.4138 -6.4710 1.7031 17 8 -2.4142 -7.6957 2.4407 18 6 -1.5812 -8.7150 1.8831 19 6 -0.1240 -8.2389 1.8959 20 7 -0.0616 -6.9182 1.2501 21 6 0.8387 -6.6643 0.2501 22 1 0.5715 -6.0050 -0.5626 23 6 2.0948 -7.2544 0.2808 24 7 2.4381 -8.0189 1.2956 25 14 3.2978 -6.9634 -1.1183 26 1 2.6741 -6.0736 -2.1305 27 1 4.5287 -6.3241 -0.5879 28 1 3.6469 -8.2616 -1.7492 29 6 2.2756 -1.1034 -0.0067 30 1 -0.3633 -0.1265 -1.0198 31 1 -0.3633 -0.8200 0.6194 32 1 -0.3634 0.9464 0.4004 33 1 1.9248 2.1210 0.0010 34 1 5.6681 -1.1848 -0.0021 35 1 3.0440 -4.4008 -0.0038 36 1 1.1041 -4.5257 1.3127 37 1 -1.2011 -4.9991 -0.2492 38 1 -1.6453 -3.9187 1.0938 39 1 -3.1040 -5.7663 2.1671 40 1 -2.7255 -6.6634 0.6765 41 1 -1.6722 -9.6247 2.4767 42 1 -1.8894 -8.9164 0.8573 43 1 0.4979 -8.9459 1.3467 44 1 0.2279 -8.1617 2.9246 45 1 3.3160 -8.4310 1.3173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050960432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:42 Heat of formation + Delta-G solvation = 45.308059 kcal Electronic energy + Delta-G solvation = -31503.025594 eV Core-core repulsion = 27329.914654 eV Total energy + Delta-G solvation = -4173.110940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49387 -39.56265 -38.54940 -38.13222 -35.46419 -34.25611 -33.68673 -32.11723 -31.27607 -30.48064 -29.88597 -27.41863 -27.19955 -25.84625 -24.21348 -23.53871 -22.95071 -22.12655 -21.35182 -20.00287 -19.62512 -17.90840 -17.64592 -17.17696 -16.54445 -16.20277 -15.93250 -15.78256 -15.33706 -15.05426 -14.86908 -14.57085 -14.38817 -14.13111 -13.93533 -13.78036 -13.63309 -13.44775 -13.02293 -12.85119 -12.60455 -12.45595 -12.39143 -11.81066 -11.63551 -11.03931 -10.94417 -10.80911 -10.59969 -10.49486 -10.46331 -10.26238 -10.18498 -10.13229 -9.72544 -9.34472 -9.03513 -8.98666 -8.77445 -8.47999 -8.27839 -6.76248 -5.99051 -3.53775 0.51020 1.38542 2.43462 2.48616 3.07846 3.23605 3.34973 3.38580 3.52767 3.89468 4.03504 4.25683 4.31554 4.47168 4.54141 4.61347 4.91625 4.94645 5.06096 5.16998 5.18550 5.23755 5.37759 5.48301 5.57417 5.64576 5.75358 5.76655 5.91153 5.96047 6.05046 6.09041 6.14629 6.21100 6.28796 6.45987 6.49610 6.65508 6.87469 6.87966 7.03706 7.47375 7.54690 7.61812 7.81392 7.96680 8.01672 8.24149 8.53262 8.98398 9.56422 10.17794 11.06685 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.004277 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.484622 B = 6545.680188 C = 8247.756869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.478 5.478 3 C 0.255 3.745 4 N -0.479 5.479 5 C -0.020 4.020 6 C 0.190 3.810 7 N -0.484 5.484 8 C 0.140 3.860 9 C -0.167 4.167 10 C 0.557 3.443 11 O -0.559 6.559 12 N -0.680 5.680 13 C 0.136 3.864 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.057 3.943 17 O -0.392 6.392 18 C 0.034 3.966 19 C 0.143 3.857 20 N -0.592 5.592 21 C -0.262 4.262 22 H 0.071 0.929 23 C 0.017 3.983 24 N -0.894 5.894 25 Si 0.872 3.128 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.285 1.285 29 C 0.120 3.880 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.219 0.781 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.417 0.583 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.029 0.971 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 12.764 0.398 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.166 5.166 3 C -0.031 4.031 4 N -0.198 5.198 5 C -0.141 4.141 6 C 0.023 3.977 7 N -0.193 5.193 8 C -0.011 4.011 9 C -0.175 4.175 10 C 0.342 3.658 11 O -0.440 6.440 12 N -0.330 5.330 13 C 0.012 3.988 14 C 0.017 3.983 15 H 0.060 0.940 16 C -0.023 4.023 17 O -0.311 6.311 18 C -0.044 4.044 19 C 0.018 3.982 20 N -0.317 5.317 21 C -0.391 4.391 22 H 0.088 0.912 23 C -0.183 4.183 24 N -0.536 5.536 25 Si 0.700 3.300 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.212 1.212 29 C 0.000 4.000 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.114 0.886 44 H 0.047 0.953 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.605 12.848 0.141 13.345 hybrid contribution -0.294 -0.121 -0.803 0.864 sum -3.899 12.727 -0.662 13.328 Atomic orbital electron populations 1.22195 0.74590 1.03755 1.05126 1.45167 1.08276 1.04910 1.58225 1.25515 0.85076 0.93445 0.99087 1.70438 1.18298 1.10025 1.21024 1.20117 0.92889 0.91448 1.09616 1.22331 0.98114 0.86306 0.90926 1.67748 1.23502 1.13650 1.14439 1.23049 0.85779 1.00453 0.91809 1.19945 0.96124 0.90025 1.11446 1.17866 0.86691 0.80723 0.80516 1.90712 1.48611 1.61871 1.42842 1.46023 1.13843 1.28644 1.44532 1.21223 0.82722 0.94087 1.00769 1.21444 0.91573 0.89311 0.95942 0.94038 1.22847 0.96792 0.86700 0.95930 1.87805 1.67555 1.22887 1.52842 1.23385 0.94013 0.89862 0.97173 1.21471 0.91170 0.88235 0.97330 1.44041 1.39473 1.06352 1.41878 1.19199 0.91510 1.28356 1.00056 0.91161 1.25237 0.96782 0.99622 0.96701 1.69914 1.20616 1.33473 1.29645 0.86722 0.82400 0.78566 0.82313 1.19840 1.19599 1.21194 1.18647 0.91522 0.88525 1.01302 0.89555 0.89263 0.89886 0.76516 0.81477 0.81183 0.74418 0.91123 0.92183 0.90002 0.93513 0.90246 0.94146 0.88576 0.95272 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.43 59.85 0.56 1.44 16 2 N -0.48 -6.11 3.18 -122.87 -0.39 -6.50 16 3 C 0.25 2.76 12.50 -89.56 -1.12 1.65 16 4 N -0.48 -6.65 11.28 -12.01 -0.14 -6.79 16 5 C -0.02 -0.31 7.27 -84.74 -0.62 -0.93 16 6 C 0.19 2.88 11.25 -17.12 -0.19 2.69 16 7 N -0.48 -8.56 10.30 -12.64 -0.13 -8.69 16 8 C 0.14 2.59 10.53 -17.08 -0.18 2.41 16 9 C -0.17 -2.93 5.76 -104.86 -0.60 -3.54 16 10 C 0.56 10.02 6.69 -12.47 -0.08 9.94 16 11 O -0.56 -10.51 13.67 5.28 0.07 -10.44 16 12 N -0.68 -12.19 3.79 -61.35 -0.23 -12.42 16 13 C 0.14 2.32 4.45 -4.04 -0.02 2.30 16 14 C 0.12 2.29 3.21 -67.42 -0.22 2.08 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.06 0.94 6.29 37.31 0.23 1.18 16 17 O -0.39 -7.35 10.74 -35.23 -0.38 -7.73 16 18 C 0.03 0.63 6.98 37.31 0.26 0.89 16 19 C 0.14 3.14 5.36 -3.53 -0.02 3.12 16 20 N -0.59 -13.00 3.03 -164.31 -0.50 -13.50 16 21 C -0.26 -6.18 6.93 -15.06 -0.10 -6.29 16 22 H 0.07 1.70 5.98 -52.48 -0.31 1.39 16 23 C 0.02 0.43 5.21 -17.43 -0.09 0.33 16 24 N -0.89 -23.28 10.95 55.49 0.61 -22.67 16 25 Si 0.87 20.00 27.34 -169.99 -4.65 15.35 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.12 1.92 6.77 -83.81 -0.57 1.36 16 30 H 0.09 0.97 7.77 -51.93 -0.40 0.56 16 31 H 0.09 1.10 6.33 -51.93 -0.33 0.77 16 32 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.22 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.17 1.99 8.06 -52.48 -0.42 1.56 16 35 H 0.17 3.40 5.47 -52.48 -0.29 3.12 16 36 H 0.42 7.99 6.87 -40.82 -0.28 7.71 16 37 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 2.34 6.32 -51.93 -0.33 2.01 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -30.06 360.05 -8.75 -38.81 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.69 Total: 10.53 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: -2.75 Total: 18.63 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.78 Total: -70.58 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.31 Total: -18.17 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.65 Total: 15.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.06 -8.75 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050960432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.122 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds