Wall clock time and date at job start Wed Apr 1 2020 03:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36255 * 126.29565 * 2 1 4 4 N 1.30134 * 110.04898 * 180.02562 * 3 2 1 5 5 C 1.35699 * 109.50187 * 0.02562 * 4 3 2 6 6 C 1.39481 * 134.43320 * 180.02562 * 5 4 3 7 7 N 1.31763 * 120.63376 * 179.97438 * 6 5 4 8 8 C 1.31944 * 122.59747 * 0.02562 * 7 6 5 9 9 C 1.39369 * 121.02046 * 0.02562 * 8 7 6 10 10 C 1.47536 * 120.75281 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00197 * 221.01739 * 10 9 8 12 12 N 1.34773 * 120.00081 * 41.01799 * 10 9 8 13 13 C 1.46505 * 120.00236 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47053 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.67753 * 59.78367 * 14 13 12 16 16 C 1.53293 * 109.68027 * 180.33532 * 14 13 12 17 17 O 1.42966 * 109.22478 * 172.02629 * 16 14 13 18 18 C 1.42957 * 114.16542 * 297.42138 * 17 16 14 19 19 C 1.53300 * 109.22199 * 62.57854 * 18 17 16 20 20 N 1.47148 * 108.38561 * 307.69500 * 19 18 17 21 21 C 1.36937 * 120.98063 * 230.80916 * 20 19 18 22 22 H 1.08008 * 119.99603 * 145.27692 * 21 20 19 23 23 C 1.38807 * 120.00043 * 325.27441 * 21 20 19 24 24 N 1.31618 * 120.00104 * 357.52116 * 23 21 20 25 25 Si 1.86801 * 119.99800 * 177.52134 * 23 21 20 26 26 H 1.48497 * 109.47122 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47418 * 120.00223 * 25 23 21 28 28 H 1.48504 * 109.47083 * 239.99896 * 25 23 21 29 29 C 1.36921 * 126.30233 * 180.34991 * 2 1 3 30 30 H 1.08998 * 109.47144 * 97.07263 * 1 2 3 31 31 H 1.09000 * 109.47155 * 217.06605 * 1 2 3 32 32 H 1.09003 * 109.47454 * 337.06624 * 1 2 3 33 33 H 1.07998 * 124.98010 * 0.06283 * 3 2 1 34 34 H 1.08003 * 119.67679 * 359.96400 * 6 5 4 35 35 H 1.08003 * 119.48607 * 179.97438 * 8 7 6 36 36 H 0.97001 * 120.00100 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.46049 * 60.00775 * 13 12 10 38 38 H 1.08993 * 109.47530 * 300.01181 * 13 12 10 39 39 H 1.09005 * 109.51349 * 291.95408 * 16 14 13 40 40 H 1.09000 * 109.51345 * 52.05502 * 16 14 13 41 41 H 1.09001 * 109.51229 * 182.50048 * 18 17 16 42 42 H 1.08996 * 109.51668 * 302.65263 * 18 17 16 43 43 H 1.09001 * 109.67855 * 187.96919 * 19 18 17 44 44 H 1.09001 * 109.67783 * 67.42310 * 19 18 17 45 45 H 0.97004 * 120.00230 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2715 1.0982 0.0000 4 7 3.5209 0.7341 -0.0005 5 6 3.5980 -0.6207 -0.0015 6 6 4.6478 -1.5390 -0.0019 7 7 4.4067 -2.8344 -0.0024 8 6 3.1838 -3.3298 -0.0030 9 6 2.0696 -2.4925 -0.0037 10 6 0.7048 -3.0529 -0.0049 11 8 -0.1588 -2.5486 -0.6965 12 7 0.4153 -4.1236 0.7606 13 6 -0.9401 -4.6797 0.7599 14 6 -0.9994 -5.8801 1.7066 15 1 -0.7352 -5.5649 2.7160 16 6 -2.4138 -6.4710 1.7031 17 8 -2.4142 -7.6957 2.4407 18 6 -1.5812 -8.7150 1.8831 19 6 -0.1240 -8.2389 1.8959 20 7 -0.0616 -6.9182 1.2501 21 6 0.8387 -6.6643 0.2501 22 1 0.5715 -6.0050 -0.5626 23 6 2.0948 -7.2544 0.2808 24 7 2.4381 -8.0189 1.2956 25 14 3.2978 -6.9634 -1.1183 26 1 2.6741 -6.0736 -2.1305 27 1 4.5287 -6.3241 -0.5879 28 1 3.6469 -8.2616 -1.7492 29 6 2.2756 -1.1034 -0.0067 30 1 -0.3633 -0.1265 -1.0198 31 1 -0.3633 -0.8200 0.6194 32 1 -0.3634 0.9464 0.4004 33 1 1.9248 2.1210 0.0010 34 1 5.6681 -1.1848 -0.0021 35 1 3.0440 -4.4008 -0.0038 36 1 1.1041 -4.5257 1.3127 37 1 -1.2011 -4.9991 -0.2492 38 1 -1.6453 -3.9187 1.0938 39 1 -3.1040 -5.7663 2.1671 40 1 -2.7255 -6.6634 0.6765 41 1 -1.6722 -9.6247 2.4767 42 1 -1.8894 -8.9164 0.8573 43 1 0.4979 -8.9459 1.3467 44 1 0.2279 -8.1617 2.9246 45 1 3.3160 -8.4310 1.3173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050960432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:41 Heat of formation + Delta-G solvation = 24.744247 kcal Electronic energy + Delta-G solvation = -31503.917308 eV Core-core repulsion = 27329.914654 eV Total energy + Delta-G solvation = -4174.002654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.57573 -40.97150 -39.97917 -39.44610 -36.99391 -35.41059 -35.22298 -33.58531 -32.75474 -32.03030 -31.07209 -29.02520 -28.27560 -27.22776 -25.45278 -25.23583 -24.15438 -23.53646 -22.61901 -21.49739 -21.05047 -19.21239 -18.78084 -18.53944 -18.08248 -17.67417 -17.25245 -17.11986 -16.56407 -16.46609 -16.29537 -16.04626 -15.84988 -15.44907 -15.32987 -15.17346 -14.92446 -14.74041 -14.65483 -14.28578 -13.76911 -13.71324 -13.53087 -13.23270 -13.01865 -12.80934 -12.75573 -12.51474 -12.13393 -11.99684 -11.91884 -11.73797 -11.67061 -11.38087 -11.29921 -10.73956 -10.60251 -10.53335 -10.13041 -9.95817 -9.49018 -8.58753 -7.90908 -5.45194 -0.69077 0.16492 1.34534 1.35398 1.45571 1.48217 1.50260 1.80343 2.14373 2.39256 2.64751 2.99210 3.04342 3.23237 3.27233 3.34966 3.44119 3.66499 3.77778 3.93244 3.99972 4.05719 4.21591 4.28962 4.33860 4.38370 4.48387 4.51810 4.58282 4.64539 4.66711 4.72754 4.76346 4.91680 5.01516 5.11637 5.12572 5.27613 5.31549 5.43744 5.65891 5.67240 5.97613 6.30356 6.37959 6.49534 6.51042 6.79079 7.07682 7.10131 7.73539 8.31222 9.13019 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.004277 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.484622 B = 6545.680188 C = 8247.756869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.478 5.478 3 C 0.282 3.718 4 N -0.503 5.503 5 C -0.024 4.024 6 C 0.190 3.810 7 N -0.507 5.507 8 C 0.121 3.879 9 C -0.175 4.175 10 C 0.560 3.440 11 O -0.568 6.568 12 N -0.684 5.684 13 C 0.142 3.858 14 C 0.125 3.875 15 H 0.038 0.962 16 C 0.058 3.942 17 O -0.398 6.398 18 C 0.046 3.954 19 C 0.148 3.852 20 N -0.606 5.606 21 C -0.240 4.240 22 H 0.066 0.934 23 C -0.018 4.018 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.277 1.277 27 H -0.276 1.276 28 H -0.294 1.294 29 C 0.099 3.901 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.276 0.724 34 H 0.197 0.803 35 H 0.148 0.852 36 H 0.410 0.590 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.006 0.994 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 15.785 0.473 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.166 5.166 3 C -0.004 4.004 4 N -0.222 5.222 5 C -0.145 4.145 6 C 0.024 3.976 7 N -0.217 5.217 8 C -0.030 4.030 9 C -0.183 4.183 10 C 0.346 3.654 11 O -0.450 6.450 12 N -0.333 5.333 13 C 0.019 3.981 14 C 0.018 3.982 15 H 0.055 0.945 16 C -0.020 4.020 17 O -0.316 6.316 18 C -0.032 4.032 19 C 0.023 3.977 20 N -0.332 5.332 21 C -0.370 4.370 22 H 0.083 0.917 23 C -0.216 4.216 24 N -0.565 5.565 25 Si 0.744 3.256 26 H -0.202 1.202 27 H -0.202 1.202 28 H -0.222 1.222 29 C -0.022 4.022 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.292 0.708 34 H 0.214 0.786 35 H 0.165 0.835 36 H 0.247 0.753 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.024 0.976 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.456 15.891 0.207 16.803 hybrid contribution 0.200 -0.863 -0.822 1.209 sum -5.256 15.028 -0.615 15.933 Atomic orbital electron populations 1.22335 0.73092 1.05695 1.04500 1.45478 1.09224 1.04333 1.57516 1.26719 0.83845 0.94859 0.94929 1.70484 1.20112 1.08704 1.22900 1.20318 0.92687 0.92466 1.09025 1.22762 0.99596 0.85496 0.89749 1.67706 1.23179 1.15161 1.15651 1.22718 0.86741 0.99651 0.93854 1.19844 0.95301 0.91001 1.12194 1.17933 0.86880 0.80494 0.80100 1.90693 1.48971 1.62173 1.43136 1.46041 1.13987 1.28730 1.44510 1.21223 0.82930 0.94326 0.99632 1.21591 0.91863 0.88944 0.95763 0.94485 1.22988 0.95940 0.86530 0.96588 1.87807 1.67069 1.23438 1.53321 1.23222 0.91366 0.90652 0.97956 1.21277 0.93152 0.87949 0.95358 1.44244 1.39818 1.07526 1.41603 1.19187 0.91340 1.26554 0.99963 0.91657 1.25564 0.97870 1.00361 0.97795 1.70018 1.20486 1.35059 1.30956 0.86067 0.81269 0.77491 0.80810 1.20190 1.20208 1.22160 1.18784 0.92761 0.88746 1.01928 0.90452 0.91410 0.84825 0.70825 0.78586 0.83507 0.75301 0.92575 0.89213 0.86276 0.93171 0.87958 0.93859 0.91329 0.97599 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.43 127.77 1.20 2.69 16 2 N -0.48 -10.89 3.18 -542.66 -1.73 -12.61 16 3 C 0.28 4.92 12.50 179.98 2.25 7.17 16 4 N -0.50 -12.56 11.28 -191.90 -2.16 -14.73 16 5 C -0.02 -0.72 7.27 39.46 0.29 -0.43 16 6 C 0.19 5.69 11.25 85.00 0.96 6.65 16 7 N -0.51 -18.39 10.30 -193.92 -2.00 -20.39 16 8 C 0.12 4.67 10.53 84.95 0.89 5.57 16 9 C -0.17 -6.23 5.76 -20.02 -0.12 -6.35 16 10 C 0.56 20.24 6.69 86.70 0.58 20.82 16 11 O -0.57 -21.02 13.67 -4.01 -0.05 -21.07 16 12 N -0.68 -24.71 3.79 -466.26 -1.77 -26.48 16 13 C 0.14 4.72 4.45 86.38 0.38 5.11 16 14 C 0.12 4.47 3.21 44.97 0.14 4.62 16 15 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 16 C 0.06 1.80 6.29 72.08 0.45 2.25 16 17 O -0.40 -14.04 10.74 -148.98 -1.60 -15.64 16 18 C 0.05 1.66 6.98 72.08 0.50 2.16 16 19 C 0.15 6.61 5.36 86.36 0.46 7.07 16 20 N -0.61 -26.89 3.03 -673.74 -2.04 -28.93 16 21 C -0.24 -11.61 6.93 84.03 0.58 -11.03 16 22 H 0.07 3.23 5.98 -2.91 -0.02 3.21 16 23 C -0.02 -0.94 5.21 84.86 0.44 -0.50 16 24 N -0.92 -49.92 10.95 21.65 0.24 -49.69 16 25 Si 0.91 43.06 27.34 68.60 1.88 44.94 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 28 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 29 C 0.10 3.08 6.77 39.50 0.27 3.34 16 30 H 0.08 1.54 7.77 -2.39 -0.02 1.52 16 31 H 0.07 1.53 6.33 -2.39 -0.02 1.51 16 32 H 0.13 0.98 8.13 -2.39 -0.02 0.96 16 33 H 0.28 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.20 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.15 6.24 5.47 -2.91 -0.02 6.23 16 36 H 0.41 16.22 6.87 -92.71 -0.64 15.59 16 37 H 0.06 2.04 7.53 -2.38 -0.02 2.03 16 38 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 3.44 6.32 -2.39 -0.02 3.43 16 44 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -68.09 360.05 0.47 -67.62 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.41 Total: 27.83 kcal Atomic # 6 Polarization: 39.84 SS G_CDS: 9.30 Total: 49.14 kcal Atomic # 7 Polarization: -143.36 SS G_CDS: -9.46 Total: -152.82 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.66 Total: -36.71 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Total: -68.09 0.47 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050960432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.367 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds