Wall clock time and date at job start Wed Apr 1 2020 03:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35984 * 126.35623 * 2 1 4 4 N 1.30282 * 110.05866 * 179.97438 * 3 2 1 5 5 C 1.34647 * 109.66698 * 0.02562 * 4 3 2 6 6 C 1.37947 * 126.35846 * 179.97438 * 2 1 3 7 7 N 1.32111 * 133.80584 * 0.02562 * 6 2 1 8 8 C 1.31733 * 121.94546 * 179.97438 * 7 6 2 9 9 C 1.38342 * 121.54596 * 359.77554 * 8 7 6 10 10 C 1.39639 * 119.37219 * 0.46249 * 9 8 7 11 11 C 1.47768 * 121.06811 * 179.81292 * 10 9 8 12 12 O 1.21566 * 119.99726 * 179.71711 * 11 10 9 13 13 N 1.34772 * 120.00273 * 359.71163 * 11 10 9 14 14 C 1.46504 * 120.00028 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47031 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.68070 * 59.83731 * 15 14 13 17 17 C 1.53296 * 109.68110 * 180.38985 * 15 14 13 18 18 O 1.42957 * 109.22180 * 172.02400 * 17 15 14 19 19 C 1.42967 * 114.17006 * 297.42415 * 18 17 15 20 20 C 1.53294 * 109.22404 * 62.57904 * 19 18 17 21 21 N 1.47156 * 108.38336 * 307.69753 * 20 19 18 22 22 C 1.36933 * 120.98158 * 230.55475 * 21 20 19 23 23 H 1.07999 * 119.99384 * 148.31997 * 22 21 20 24 24 C 1.38807 * 120.00406 * 328.31518 * 22 21 20 25 25 N 1.31620 * 119.99733 * 349.25874 * 24 22 21 26 26 Si 1.86795 * 120.00251 * 169.24732 * 24 22 21 27 27 H 1.48510 * 109.46864 * 60.00591 * 26 24 22 28 28 H 1.48498 * 109.47180 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47509 * 300.00904 * 26 24 22 30 30 H 1.08994 * 109.47183 * 90.02069 * 1 2 3 31 31 H 1.09008 * 109.46576 * 210.02164 * 1 2 3 32 32 H 1.08994 * 109.47055 * 330.01862 * 1 2 3 33 33 H 1.08009 * 124.97443 * 359.96498 * 3 2 1 34 34 H 1.07992 * 119.22622 * 179.97438 * 8 7 6 35 35 H 1.07995 * 120.31263 * 180.24559 * 9 8 7 36 36 H 0.96996 * 120.00147 * 0.02562 * 13 11 10 37 37 H 1.08998 * 109.46884 * 60.00050 * 14 13 11 38 38 H 1.08997 * 109.46861 * 300.00236 * 14 13 11 39 39 H 1.08993 * 109.51228 * 291.95186 * 17 15 14 40 40 H 1.09009 * 109.50925 * 52.10524 * 17 15 14 41 41 H 1.09006 * 109.50966 * 302.65667 * 19 18 17 42 42 H 1.08995 * 109.55136 * 182.53094 * 19 18 17 43 43 H 1.08999 * 109.68336 * 187.97747 * 20 19 18 44 44 H 1.09000 * 109.71311 * 67.44005 * 20 19 18 45 45 H 0.96999 * 120.00125 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0951 0.0000 4 7 3.5216 0.7295 0.0005 5 6 3.6007 -0.6146 0.0004 6 6 2.2828 -1.1109 0.0005 7 7 2.0571 -2.4126 0.0007 8 6 3.0395 -3.2903 0.0007 9 6 4.3647 -2.8934 -0.0041 10 6 4.6717 -1.5312 0.0008 11 6 6.0741 -1.0656 0.0001 12 8 6.3192 0.1251 -0.0008 13 7 7.0815 -1.9609 0.0005 14 6 8.4719 -1.4992 0.0004 15 6 9.4105 -2.7074 0.0004 16 1 9.2283 -3.3137 -0.8869 17 6 10.8671 -2.2297 0.0101 18 8 11.7299 -3.3540 0.1973 19 6 11.5490 -4.0295 1.4443 20 6 10.1274 -4.5994 1.5080 21 7 9.1788 -3.5150 1.2086 22 6 8.1123 -3.2646 2.0301 23 1 7.7402 -2.2566 2.1397 24 6 7.5094 -4.3061 2.7219 25 7 7.8172 -5.5528 2.4334 26 14 6.2616 -3.9382 4.0624 27 1 5.1206 -3.1844 3.4832 28 1 5.7692 -5.2129 4.6436 29 1 6.9031 -3.1248 5.1262 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 1.9254 2.1184 -0.0005 34 1 2.8047 -4.3444 0.0012 35 1 5.1543 -3.6302 -0.0080 36 1 6.8860 -2.9109 0.0010 37 1 8.6546 -0.8966 0.8901 38 1 8.6547 -0.8974 -0.8898 39 1 11.0983 -1.7474 -0.9396 40 1 11.0120 -1.5199 0.8246 41 1 11.6964 -3.3263 2.2640 42 1 12.2710 -4.8418 1.5272 43 1 9.9334 -4.9915 2.5063 44 1 10.0176 -5.3967 0.7728 45 1 7.3962 -6.2807 2.9171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051102134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:34 Heat of formation + Delta-G solvation = 55.294402 kcal Electronic energy + Delta-G solvation = -31010.973256 eV Core-core repulsion = 26838.295356 eV Total energy + Delta-G solvation = -4172.677900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37269 -39.41042 -38.45361 -37.85480 -35.32991 -34.46600 -33.58910 -32.28959 -31.18922 -30.35507 -29.68886 -27.29615 -27.23382 -25.90420 -24.20396 -23.45937 -22.86284 -22.08765 -21.24083 -19.83673 -19.50618 -17.96252 -17.43968 -17.19276 -16.45724 -16.20323 -15.86561 -15.68911 -15.06345 -14.81063 -14.63937 -14.46357 -14.35996 -13.93845 -13.91455 -13.78488 -13.44273 -13.37723 -13.07381 -12.88408 -12.62384 -12.40323 -12.28969 -11.86954 -11.55851 -11.06725 -10.88442 -10.77848 -10.75875 -10.63234 -10.41663 -10.27717 -10.06252 -9.73858 -9.65000 -9.10325 -8.90209 -8.70972 -8.67388 -8.48094 -8.21715 -6.74174 -5.93082 -3.43137 0.52696 1.23985 2.24364 2.79021 3.28158 3.31996 3.34327 3.39385 3.62904 4.07533 4.13143 4.26318 4.33104 4.46811 4.53514 4.82566 4.89546 4.92008 5.02507 5.14991 5.16438 5.24407 5.28867 5.58397 5.62721 5.73024 5.84779 5.92201 5.96368 6.02012 6.08328 6.16028 6.16799 6.26077 6.32884 6.52244 6.62391 6.75769 6.85777 7.06136 7.09316 7.47264 7.69427 7.79010 7.83407 7.86462 8.20005 8.27693 8.81959 9.04042 9.63776 10.23462 11.13015 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003672 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.026205 B = 7622.720430 C = 8795.416097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.488 5.488 3 C 0.263 3.737 4 N -0.459 5.459 5 C 0.051 3.949 6 C 0.227 3.773 7 N -0.473 5.473 8 C 0.134 3.866 9 C -0.141 4.141 10 C -0.026 4.026 11 C 0.547 3.453 12 O -0.526 6.526 13 N -0.688 5.688 14 C 0.137 3.863 15 C 0.125 3.875 16 H 0.043 0.957 17 C 0.056 3.944 18 O -0.392 6.392 19 C 0.034 3.966 20 C 0.144 3.856 21 N -0.591 5.591 22 C -0.256 4.256 23 H 0.072 0.928 24 C 0.014 3.986 25 N -0.898 5.898 26 Si 0.891 3.109 27 H -0.279 1.279 28 H -0.289 1.289 29 H -0.283 1.283 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.221 0.779 34 H 0.172 0.828 35 H 0.156 0.844 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 6.156 -5.779 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.182 5.182 3 C -0.023 4.023 4 N -0.177 5.177 5 C -0.072 4.072 6 C -0.008 4.008 7 N -0.187 5.187 8 C -0.032 4.032 9 C -0.164 4.164 10 C -0.039 4.039 11 C 0.331 3.669 12 O -0.403 6.403 13 N -0.341 5.341 14 C 0.013 3.987 15 C 0.018 3.982 16 H 0.060 0.940 17 C -0.023 4.023 18 O -0.311 6.311 19 C -0.043 4.043 20 C 0.019 3.981 21 N -0.317 5.317 22 C -0.385 4.385 23 H 0.090 0.910 24 C -0.186 4.186 25 N -0.542 5.542 26 Si 0.720 3.280 27 H -0.205 1.205 28 H -0.214 1.214 29 H -0.210 1.210 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.237 0.763 34 H 0.189 0.811 35 H 0.174 0.826 36 H 0.253 0.747 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.048 0.952 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.343 7.088 -5.833 13.829 hybrid contribution -0.989 -0.587 1.167 1.639 sum -11.332 6.501 -4.665 13.872 Atomic orbital electron populations 1.21970 0.75543 1.04732 1.03496 1.45050 1.07505 1.04617 1.61047 1.25650 0.84949 0.93122 0.98560 1.70325 1.17242 1.10795 1.19298 1.19183 0.91952 0.91199 1.04916 1.18921 0.88929 0.88087 1.04885 1.66158 1.38170 0.99407 1.14941 1.22515 0.87217 0.98394 0.95096 1.22385 0.99086 0.95084 0.99881 1.19774 0.92998 0.91882 0.99196 1.17879 0.84282 0.86291 0.78409 1.90787 1.84424 1.15653 1.49470 1.45917 1.05286 1.10657 1.72230 1.21186 0.80214 0.96150 1.01160 1.21441 0.92780 0.92168 0.91818 0.93995 1.22863 0.90704 0.88201 1.00541 1.87801 1.59722 1.44682 1.38878 1.23350 1.00117 0.95787 0.85085 1.21405 0.84795 0.89689 1.02207 1.44082 1.28170 1.36668 1.22780 1.19191 1.06682 0.92740 1.19936 0.91007 1.25095 0.98082 0.95228 1.00201 1.69968 1.44828 0.97692 1.41685 0.86548 0.81758 0.77106 0.82598 1.20511 1.21424 1.20958 0.90749 0.89385 0.89368 0.76252 0.81074 0.82609 0.74713 0.91321 0.92091 0.89859 0.93461 0.94132 0.90259 0.89069 0.95186 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.20 59.85 0.67 1.26 16 2 N -0.49 -5.90 3.20 -124.98 -0.40 -6.30 16 3 C 0.26 3.18 12.50 -89.69 -1.12 2.06 16 4 N -0.46 -8.11 10.63 -11.88 -0.13 -8.23 16 5 C 0.05 0.94 6.85 -84.62 -0.58 0.36 16 6 C 0.23 3.64 8.02 -155.64 -1.25 2.39 16 7 N -0.47 -7.33 10.35 -12.30 -0.13 -7.45 16 8 C 0.13 1.93 11.14 -17.56 -0.20 1.73 16 9 C -0.14 -2.28 9.60 -39.02 -0.37 -2.65 16 10 C -0.03 -0.48 5.93 -104.45 -0.62 -1.10 16 11 C 0.55 11.22 7.79 -12.37 -0.10 11.12 16 12 O -0.53 -12.20 16.19 5.31 0.09 -12.11 16 13 N -0.69 -13.30 3.74 -61.27 -0.23 -13.53 16 14 C 0.14 2.56 4.45 -4.04 -0.02 2.55 16 15 C 0.12 2.41 3.21 -67.42 -0.22 2.19 16 16 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 17 C 0.06 0.98 6.29 37.31 0.23 1.22 16 18 O -0.39 -7.54 10.74 -35.23 -0.38 -7.92 16 19 C 0.03 0.66 6.98 37.31 0.26 0.92 16 20 C 0.14 3.21 5.37 -3.53 -0.02 3.19 16 21 N -0.59 -13.32 3.03 -164.30 -0.50 -13.82 16 22 C -0.26 -6.23 7.04 -15.06 -0.11 -6.33 16 23 H 0.07 1.82 5.84 -52.49 -0.31 1.51 16 24 C 0.01 0.35 5.05 -17.43 -0.09 0.26 16 25 N -0.90 -23.33 11.17 55.49 0.62 -22.71 16 26 Si 0.89 20.71 29.57 -169.99 -5.03 15.69 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.22 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.16 2.39 6.53 -52.49 -0.34 2.04 16 36 H 0.41 8.05 5.46 -40.82 -0.22 7.82 16 37 H 0.07 1.40 7.56 -51.93 -0.39 1.01 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.09 2.23 6.37 -51.93 -0.33 1.90 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -33.86 368.97 -9.84 -43.70 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.80 Total: 7.99 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: -3.52 Total: 19.14 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -0.76 Total: -72.05 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.29 Total: -20.03 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.86 -9.84 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051102134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.998 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds