Wall clock time and date at job start Wed Apr 1 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35984 * 126.35623 * 2 1 4 4 N 1.30282 * 110.05866 * 179.97438 * 3 2 1 5 5 C 1.34647 * 109.66698 * 0.02562 * 4 3 2 6 6 C 1.37947 * 126.35846 * 179.97438 * 2 1 3 7 7 N 1.32111 * 133.80584 * 0.02562 * 6 2 1 8 8 C 1.31733 * 121.94546 * 179.97438 * 7 6 2 9 9 C 1.38342 * 121.54596 * 359.77554 * 8 7 6 10 10 C 1.39639 * 119.37219 * 0.46249 * 9 8 7 11 11 C 1.47768 * 121.06811 * 179.81292 * 10 9 8 12 12 O 1.21566 * 119.99726 * 179.71711 * 11 10 9 13 13 N 1.34772 * 120.00273 * 359.71163 * 11 10 9 14 14 C 1.46504 * 120.00028 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47031 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.68070 * 59.83731 * 15 14 13 17 17 C 1.53296 * 109.68110 * 180.38985 * 15 14 13 18 18 O 1.42957 * 109.22180 * 172.02400 * 17 15 14 19 19 C 1.42967 * 114.17006 * 297.42415 * 18 17 15 20 20 C 1.53294 * 109.22404 * 62.57904 * 19 18 17 21 21 N 1.47156 * 108.38336 * 307.69753 * 20 19 18 22 22 C 1.36933 * 120.98158 * 230.55475 * 21 20 19 23 23 H 1.07999 * 119.99384 * 148.31997 * 22 21 20 24 24 C 1.38807 * 120.00406 * 328.31518 * 22 21 20 25 25 N 1.31620 * 119.99733 * 349.25874 * 24 22 21 26 26 Si 1.86795 * 120.00251 * 169.24732 * 24 22 21 27 27 H 1.48510 * 109.46864 * 60.00591 * 26 24 22 28 28 H 1.48498 * 109.47180 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47509 * 300.00904 * 26 24 22 30 30 H 1.08994 * 109.47183 * 90.02069 * 1 2 3 31 31 H 1.09008 * 109.46576 * 210.02164 * 1 2 3 32 32 H 1.08994 * 109.47055 * 330.01862 * 1 2 3 33 33 H 1.08009 * 124.97443 * 359.96498 * 3 2 1 34 34 H 1.07992 * 119.22622 * 179.97438 * 8 7 6 35 35 H 1.07995 * 120.31263 * 180.24559 * 9 8 7 36 36 H 0.96996 * 120.00147 * 0.02562 * 13 11 10 37 37 H 1.08998 * 109.46884 * 60.00050 * 14 13 11 38 38 H 1.08997 * 109.46861 * 300.00236 * 14 13 11 39 39 H 1.08993 * 109.51228 * 291.95186 * 17 15 14 40 40 H 1.09009 * 109.50925 * 52.10524 * 17 15 14 41 41 H 1.09006 * 109.50966 * 302.65667 * 19 18 17 42 42 H 1.08995 * 109.55136 * 182.53094 * 19 18 17 43 43 H 1.08999 * 109.68336 * 187.97747 * 20 19 18 44 44 H 1.09000 * 109.71311 * 67.44005 * 20 19 18 45 45 H 0.96999 * 120.00125 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0951 0.0000 4 7 3.5216 0.7295 0.0005 5 6 3.6007 -0.6146 0.0004 6 6 2.2828 -1.1109 0.0005 7 7 2.0571 -2.4126 0.0007 8 6 3.0395 -3.2903 0.0007 9 6 4.3647 -2.8934 -0.0041 10 6 4.6717 -1.5312 0.0008 11 6 6.0741 -1.0656 0.0001 12 8 6.3192 0.1251 -0.0008 13 7 7.0815 -1.9609 0.0005 14 6 8.4719 -1.4992 0.0004 15 6 9.4105 -2.7074 0.0004 16 1 9.2283 -3.3137 -0.8869 17 6 10.8671 -2.2297 0.0101 18 8 11.7299 -3.3540 0.1973 19 6 11.5490 -4.0295 1.4443 20 6 10.1274 -4.5994 1.5080 21 7 9.1788 -3.5150 1.2086 22 6 8.1123 -3.2646 2.0301 23 1 7.7402 -2.2566 2.1397 24 6 7.5094 -4.3061 2.7219 25 7 7.8172 -5.5528 2.4334 26 14 6.2616 -3.9382 4.0624 27 1 5.1206 -3.1844 3.4832 28 1 5.7692 -5.2129 4.6436 29 1 6.9031 -3.1248 5.1262 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 1.9254 2.1184 -0.0005 34 1 2.8047 -4.3444 0.0012 35 1 5.1543 -3.6302 -0.0080 36 1 6.8860 -2.9109 0.0010 37 1 8.6546 -0.8966 0.8901 38 1 8.6547 -0.8974 -0.8898 39 1 11.0983 -1.7474 -0.9396 40 1 11.0120 -1.5199 0.8246 41 1 11.6964 -3.3263 2.2640 42 1 12.2710 -4.8418 1.5272 43 1 9.9334 -4.9915 2.5063 44 1 10.0176 -5.3967 0.7728 45 1 7.3962 -6.2807 2.9171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051102134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:33 Heat of formation + Delta-G solvation = 32.833556 kcal Electronic energy + Delta-G solvation = -31011.947231 eV Core-core repulsion = 26838.295356 eV Total energy + Delta-G solvation = -4173.651875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.46492 -40.92895 -39.93538 -39.15315 -36.95187 -35.50903 -35.31370 -33.70744 -32.78153 -31.95267 -30.83060 -28.99773 -28.05631 -27.39322 -25.48801 -25.19623 -24.02852 -23.53882 -22.60866 -21.44457 -20.92742 -19.21160 -18.65415 -18.49789 -18.02839 -17.57544 -17.22554 -17.15800 -16.45466 -16.27308 -16.12878 -16.05820 -15.64406 -15.43631 -15.33974 -15.02687 -14.87391 -14.64048 -14.44984 -14.26036 -13.71695 -13.54368 -13.46806 -13.38084 -13.11746 -12.90355 -12.74680 -12.50521 -12.16152 -11.99392 -11.89329 -11.84558 -11.75129 -11.32513 -11.21225 -10.67357 -10.56087 -10.25219 -9.98264 -9.74466 -9.59370 -8.59541 -7.86471 -5.37116 -0.70371 0.05620 1.32894 1.39048 1.43917 1.48672 1.69663 1.91058 2.17087 2.44439 2.80003 3.02498 3.07323 3.28709 3.30525 3.44593 3.58189 3.65057 3.88391 4.02793 4.06739 4.19960 4.23421 4.32318 4.42987 4.43925 4.49949 4.60766 4.64757 4.68186 4.70904 4.74483 4.79426 4.84650 5.01931 5.04875 5.13275 5.31951 5.48266 5.52410 5.65634 5.70533 5.94901 6.31388 6.39020 6.61425 6.67748 6.74620 7.12802 7.25076 7.77152 8.33938 9.17459 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003672 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.026205 B = 7622.720430 C = 8795.416097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.482 5.482 3 C 0.290 3.710 4 N -0.523 5.523 5 C 0.025 3.975 6 C 0.212 3.788 7 N -0.470 5.470 8 C 0.131 3.869 9 C -0.138 4.138 10 C -0.063 4.063 11 C 0.546 3.454 12 O -0.561 6.561 13 N -0.685 5.685 14 C 0.142 3.858 15 C 0.128 3.872 16 H 0.042 0.958 17 C 0.058 3.942 18 O -0.396 6.396 19 C 0.045 3.955 20 C 0.150 3.850 21 N -0.604 5.604 22 C -0.244 4.244 23 H 0.061 0.939 24 C -0.017 4.017 25 N -0.918 5.918 26 Si 0.933 3.067 27 H -0.284 1.284 28 H -0.287 1.287 29 H -0.293 1.293 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.277 0.723 34 H 0.208 0.792 35 H 0.157 0.843 36 H 0.413 0.587 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.011 0.989 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 7.087 -6.402 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.174 5.174 3 C 0.005 3.995 4 N -0.242 5.242 5 C -0.099 4.099 6 C -0.025 4.025 7 N -0.183 5.183 8 C -0.035 4.035 9 C -0.160 4.160 10 C -0.076 4.076 11 C 0.332 3.668 12 O -0.441 6.441 13 N -0.337 5.337 14 C 0.018 3.982 15 C 0.021 3.979 16 H 0.060 0.940 17 C -0.021 4.021 18 O -0.315 6.315 19 C -0.033 4.033 20 C 0.024 3.976 21 N -0.330 5.330 22 C -0.374 4.374 23 H 0.078 0.922 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.763 3.237 27 H -0.210 1.210 28 H -0.213 1.213 29 H -0.220 1.220 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.292 0.708 34 H 0.225 0.775 35 H 0.175 0.825 36 H 0.251 0.749 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.123 0.877 43 H 0.084 0.916 44 H 0.029 0.971 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.810 8.015 -6.468 15.670 hybrid contribution -0.638 -0.773 1.323 1.660 sum -12.448 7.243 -5.145 15.293 Atomic orbital electron populations 1.22376 0.72256 1.06426 1.05176 1.45445 1.09253 1.03198 1.59493 1.26726 0.83556 0.94928 0.94291 1.70268 1.20469 1.10703 1.22718 1.19476 0.92920 0.92001 1.05464 1.19240 0.89102 0.88965 1.05186 1.66289 1.38169 0.99348 1.14497 1.23076 0.86299 0.99901 0.94256 1.22474 1.00121 0.94093 0.99351 1.19810 0.92185 0.93302 1.02309 1.18215 0.85250 0.85864 0.77450 1.90741 1.85106 1.16926 1.51333 1.45908 1.05492 1.10428 1.71873 1.21166 0.79947 0.95878 1.01198 1.21551 0.94311 0.91717 0.90297 0.94042 1.22975 0.88898 0.87746 1.02462 1.87807 1.59828 1.45081 1.38750 1.23229 0.98332 0.96460 0.85256 1.21245 0.86842 0.89395 1.00073 1.44259 1.27964 1.36986 1.23828 1.19129 1.06586 0.92008 1.19667 0.92175 1.25411 0.99308 0.95233 1.01522 1.70052 1.45773 0.97957 1.42497 0.85899 0.80404 0.76480 0.80920 1.21008 1.21307 1.22047 0.89034 0.89969 0.85461 0.70818 0.77514 0.82515 0.74872 0.93178 0.90063 0.86408 0.93385 0.94018 0.87691 0.91596 0.97093 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 11.20 127.77 1.43 2.22 16 2 N -0.48 -10.46 3.20 -549.32 -1.76 -12.22 16 3 C 0.29 6.32 12.50 180.02 2.25 8.57 16 4 N -0.52 -18.38 10.63 -191.51 -2.04 -20.41 16 5 C 0.02 0.93 6.85 40.01 0.27 1.21 16 6 C 0.21 6.60 8.02 133.92 1.07 7.68 16 7 N -0.47 -14.03 10.35 -192.83 -2.00 -16.03 16 8 C 0.13 3.66 11.14 84.73 0.94 4.60 16 9 C -0.14 -4.51 9.60 22.63 0.22 -4.29 16 10 C -0.06 -2.46 5.93 -19.75 -0.12 -2.57 16 11 C 0.55 23.25 7.79 86.76 0.68 23.93 16 12 O -0.56 -27.01 16.19 -3.92 -0.06 -27.08 16 13 N -0.69 -27.22 3.74 -466.04 -1.74 -28.97 16 14 C 0.14 5.34 4.45 86.38 0.38 5.73 16 15 C 0.13 4.85 3.21 44.97 0.14 4.99 16 16 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 17 C 0.06 1.92 6.29 72.08 0.45 2.37 16 18 O -0.40 -14.43 10.74 -148.98 -1.60 -16.03 16 19 C 0.05 1.65 6.98 72.08 0.50 2.15 16 20 C 0.15 6.69 5.37 86.35 0.46 7.15 16 21 N -0.60 -27.40 3.03 -673.72 -2.04 -29.44 16 22 C -0.24 -12.04 7.04 84.03 0.59 -11.45 16 23 H 0.06 3.12 5.84 -2.91 -0.02 3.11 16 24 C -0.02 -0.87 5.05 84.86 0.43 -0.44 16 25 N -0.92 -48.41 11.17 21.65 0.24 -48.17 16 26 Si 0.93 43.30 29.57 68.60 2.03 45.33 16 27 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.28 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.21 4.07 8.06 -2.91 -0.02 4.05 16 35 H 0.16 4.95 6.53 -2.91 -0.02 4.93 16 36 H 0.41 16.52 5.46 -92.71 -0.51 16.02 16 37 H 0.05 2.08 7.56 -2.39 -0.02 2.06 16 38 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 43 H 0.07 3.28 6.37 -2.39 -0.02 3.26 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 Total: -1.00 -76.48 368.97 1.28 -75.20 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.53 Total: 25.96 kcal Atomic # 6 Polarization: 42.13 SS G_CDS: 9.72 Total: 51.85 kcal Atomic # 7 Polarization: -145.91 SS G_CDS: -9.33 Total: -155.24 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.66 Total: -43.11 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -76.48 1.28 -75.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051102134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.035 kcal (2) G-P(sol) polarization free energy of solvation -76.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds