Wall clock time and date at job start Wed Apr 1 2020 03:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35998 * 126.28975 * 2 1 4 4 N 1.30220 * 110.17541 * 179.97438 * 3 2 1 5 5 C 1.35429 * 109.57769 * 0.02562 * 4 3 2 6 6 C 1.39896 * 133.81070 * 179.97438 * 5 4 3 7 7 C 1.36989 * 118.36447 * 180.02562 * 6 5 4 8 8 C 1.39738 * 119.59457 * 0.02562 * 7 6 5 9 9 C 1.47973 * 119.42384 * 179.97438 * 8 7 6 10 10 O 1.21541 * 120.00485 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99497 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99841 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47185 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.67984 * 59.10414 * 13 12 11 15 15 C 1.53296 * 109.68154 * 179.62262 * 13 12 11 16 16 O 1.42967 * 109.22174 * 172.02407 * 15 13 12 17 17 C 1.42954 * 114.16854 * 297.42371 * 16 15 13 18 18 C 1.53293 * 109.22758 * 62.57943 * 17 16 15 19 19 N 1.47155 * 109.68318 * 298.58857 * 13 12 11 20 20 C 1.36938 * 120.98250 * 9.70968 * 19 13 12 21 21 H 1.07998 * 119.99673 * 329.55495 * 20 19 13 22 22 C 1.38810 * 119.99722 * 149.55064 * 20 19 13 23 23 N 1.31622 * 119.99537 * 163.24483 * 22 20 19 24 24 Si 1.86795 * 120.00446 * 343.24740 * 22 20 19 25 25 H 1.48496 * 109.47335 * 88.91499 * 24 22 20 26 26 H 1.48498 * 109.47281 * 208.92137 * 24 22 20 27 27 H 1.48501 * 109.47010 * 328.91607 * 24 22 20 28 28 N 1.32652 * 121.14150 * 359.97438 * 8 7 6 29 29 C 1.31878 * 121.37147 * 0.02562 * 28 8 7 30 30 H 1.09005 * 109.46823 * 90.02343 * 1 2 3 31 31 H 1.09003 * 109.47014 * 210.02106 * 1 2 3 32 32 H 1.08993 * 109.47064 * 330.02338 * 1 2 3 33 33 H 1.07994 * 124.91062 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.81970 * 0.02562 * 6 5 4 35 35 H 1.07991 * 120.20607 * 180.02562 * 7 6 5 36 36 H 0.97002 * 120.00037 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.47374 * 300.00686 * 12 11 9 38 38 H 1.09005 * 109.46826 * 60.00279 * 12 11 9 39 39 H 1.08995 * 109.51517 * 291.95268 * 15 13 12 40 40 H 1.09002 * 109.51115 * 52.05325 * 15 13 12 41 41 H 1.09005 * 109.51231 * 182.50676 * 17 16 15 42 42 H 1.08998 * 109.51333 * 302.65243 * 17 16 15 43 43 H 1.08999 * 109.67857 * 67.41655 * 18 17 16 44 44 H 1.09000 * 109.68668 * 187.97572 * 18 17 16 45 45 H 0.97003 * 119.99782 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0962 0.0000 4 7 3.5210 0.7348 0.0005 5 6 3.6028 -0.6171 0.0004 6 6 4.6690 -1.5228 0.0003 7 6 4.3846 -2.8628 -0.0005 8 6 3.0527 -3.2856 -0.0016 9 6 2.7498 -4.7340 -0.0030 10 8 3.6556 -5.5444 -0.0026 11 7 1.4693 -5.1546 -0.0047 12 6 1.1694 -6.5885 -0.0066 13 6 -0.3470 -6.7924 -0.0089 14 1 -0.7798 -6.3181 -0.8897 15 6 -0.6663 -8.2917 -0.0204 16 8 -2.0721 -8.4749 0.1648 17 6 -2.5644 -7.9967 1.4189 18 6 -2.3423 -6.4824 1.5041 19 7 -0.9282 -6.2026 1.2076 20 6 -0.1751 -5.4180 2.0397 21 1 0.8868 -5.5922 2.1315 22 6 -0.7766 -4.3988 2.7652 23 7 -0.1513 -3.8652 3.7931 24 14 -2.4735 -3.7846 2.2827 25 1 -3.5081 -4.5876 2.9827 26 1 -2.6109 -2.3569 2.6670 27 1 -2.6503 -3.9212 0.8146 28 7 2.0553 -2.4110 -0.0016 29 6 2.2815 -1.1118 -0.0009 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5134 33 1 1.9220 2.1185 0.0004 34 1 5.6912 -1.1741 0.0008 35 1 5.1847 -3.5881 -0.0001 36 1 0.7464 -4.5078 -0.0054 37 1 1.5988 -7.0484 -0.8966 38 1 1.5971 -7.0504 0.8833 39 1 -0.3661 -8.7206 -0.9764 40 1 -0.1246 -8.7855 0.7864 41 1 -3.6297 -8.2135 1.4983 42 1 -2.0304 -8.4894 2.2314 43 1 -2.9764 -5.9768 0.7759 44 1 -2.5832 -6.1319 2.5077 45 1 -0.5714 -3.1527 4.2998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051119554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:39 Heat of formation + Delta-G solvation = 57.080213 kcal Electronic energy + Delta-G solvation = -31275.580054 eV Core-core repulsion = 27102.979593 eV Total energy + Delta-G solvation = -4172.600461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29914 -39.65544 -38.77084 -37.56737 -35.48161 -34.52120 -33.70651 -32.00669 -31.61009 -31.04328 -29.79316 -27.55768 -27.16447 -25.93133 -24.34344 -23.45173 -22.95514 -22.12795 -20.81660 -20.26878 -19.90439 -17.95791 -17.68451 -17.04289 -16.59243 -16.14701 -16.05492 -15.85713 -15.16172 -15.06068 -14.77411 -14.49275 -14.45397 -14.24356 -13.99898 -13.70752 -13.41749 -13.35018 -13.06441 -12.75579 -12.61003 -12.51948 -12.36266 -11.99683 -11.86824 -11.57128 -11.17169 -10.95647 -10.80539 -10.78050 -10.58272 -10.37180 -9.89690 -9.81435 -9.66346 -9.37175 -9.02777 -8.71509 -8.68130 -8.51152 -8.23811 -7.04116 -6.04893 -3.47862 0.60597 1.34808 2.31680 2.60783 3.17043 3.27443 3.32042 3.35456 3.61230 4.04142 4.16456 4.23111 4.28282 4.38796 4.57195 4.63407 4.85670 5.01176 5.11901 5.12599 5.21074 5.32038 5.42068 5.51739 5.54601 5.60741 5.65494 5.76734 5.87125 5.88756 5.94616 5.98954 6.09553 6.14254 6.20001 6.23382 6.32479 6.47846 6.63293 6.69710 6.86730 7.04371 7.57240 7.66083 7.77474 7.80774 8.21154 8.24793 8.74775 8.78324 9.57245 9.93178 11.09199 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.004291 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.255141 B = 6524.462244 C = 7984.630349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.481 5.481 3 C 0.275 3.725 4 N -0.494 5.494 5 C 0.017 3.983 6 C -0.032 4.032 7 C -0.127 4.127 8 C 0.132 3.868 9 C 0.570 3.430 10 O -0.552 6.552 11 N -0.671 5.671 12 C 0.133 3.867 13 C 0.128 3.872 14 H 0.046 0.954 15 C 0.055 3.945 16 O -0.388 6.388 17 C 0.046 3.954 18 C 0.091 3.909 19 N -0.606 5.606 20 C -0.264 4.264 21 H 0.097 0.903 22 C 0.033 3.967 23 N -0.899 5.899 24 Si 0.880 3.120 25 H -0.288 1.288 26 H -0.305 1.305 27 H -0.271 1.271 28 N -0.437 5.437 29 C 0.238 3.762 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.221 0.779 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.421 0.579 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.081 0.919 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 5.266 -9.037 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.173 5.173 3 C -0.011 4.011 4 N -0.214 5.214 5 C -0.105 4.105 6 C -0.060 4.060 7 C -0.150 4.150 8 C -0.017 4.017 9 C 0.354 3.646 10 O -0.430 6.430 11 N -0.322 5.322 12 C 0.009 3.991 13 C 0.021 3.979 14 H 0.064 0.936 15 C -0.024 4.024 16 O -0.306 6.306 17 C -0.032 4.032 18 C -0.034 4.034 19 N -0.333 5.333 20 C -0.392 4.392 21 H 0.114 0.886 22 C -0.167 4.167 23 N -0.541 5.541 24 Si 0.710 3.290 25 H -0.216 1.216 26 H -0.234 1.234 27 H -0.196 1.196 28 N -0.152 5.152 29 C 0.002 3.998 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.237 0.763 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.936 4.990 -9.032 10.361 hybrid contribution -1.398 0.915 0.331 1.704 sum -0.462 5.905 -8.700 10.525 Atomic orbital electron populations 1.22100 0.75052 1.05564 1.03690 1.45024 1.07858 1.04533 1.59853 1.25411 0.85059 0.93097 0.97564 1.70399 1.18128 1.10643 1.22200 1.19820 0.93387 0.91385 1.05887 1.20368 0.98150 0.90709 0.96737 1.21540 0.97230 0.95933 1.00344 1.20969 0.88966 0.92954 0.98836 1.17616 0.83520 0.85932 0.77554 1.90736 1.45999 1.53933 1.52374 1.45816 1.07459 1.08733 1.70153 1.21232 0.94606 0.81645 1.01623 1.21454 0.92213 0.93532 0.90698 0.93613 1.22908 0.82361 0.95965 1.01196 1.87826 1.23072 1.82086 1.37653 1.23064 0.98469 0.95860 0.85808 1.22053 0.86809 0.94047 1.00514 1.44442 1.07533 1.58193 1.23128 1.18976 0.94106 1.08109 1.18002 0.88602 1.25307 0.97190 0.96893 0.97280 1.69808 1.38561 1.27761 1.17979 0.87045 0.85632 0.77078 0.79198 1.21584 1.23377 1.19574 1.66214 1.36791 0.99751 1.12425 1.18849 0.89023 0.87743 1.04220 0.90497 0.88612 0.89230 0.76307 0.83693 0.82695 0.73967 0.91694 0.90724 0.89314 0.92825 0.89779 0.92962 0.94897 0.90065 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 11.19 59.85 0.67 1.52 16 2 N -0.48 -6.60 3.20 -124.97 -0.40 -7.00 16 3 C 0.27 3.18 12.49 -89.73 -1.12 2.06 16 4 N -0.49 -7.27 11.27 -11.93 -0.13 -7.40 16 5 C 0.02 0.27 7.25 -84.58 -0.61 -0.34 16 6 C -0.03 -0.47 10.16 -39.41 -0.40 -0.87 16 7 C -0.13 -2.01 9.55 -39.47 -0.38 -2.38 16 8 C 0.13 2.47 6.74 -82.96 -0.56 1.91 16 9 C 0.57 11.36 7.80 -12.27 -0.10 11.27 16 10 O -0.55 -11.66 16.29 5.33 0.09 -11.57 16 11 N -0.67 -13.22 3.78 -61.21 -0.23 -13.45 16 12 C 0.13 2.41 4.44 -4.04 -0.02 2.39 16 13 C 0.13 2.33 3.20 -67.42 -0.22 2.12 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.05 0.88 6.29 37.31 0.23 1.11 16 16 O -0.39 -6.82 10.74 -35.23 -0.38 -7.20 16 17 C 0.05 0.80 6.98 37.31 0.26 1.06 16 18 C 0.09 1.87 4.38 -3.53 -0.02 1.85 16 19 N -0.61 -13.19 2.78 -164.29 -0.46 -13.65 16 20 C -0.26 -6.67 7.59 -15.06 -0.11 -6.78 16 21 H 0.10 2.67 5.98 -52.49 -0.31 2.36 16 22 C 0.03 0.89 5.28 -17.43 -0.09 0.80 16 23 N -0.90 -26.04 13.97 55.49 0.78 -25.26 16 24 Si 0.88 20.74 24.28 -169.99 -4.13 16.61 16 25 H -0.29 -6.67 6.54 56.52 0.37 -6.30 16 26 H -0.31 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.27 -6.25 6.65 56.52 0.38 -5.87 16 28 N -0.44 -8.31 9.54 -8.82 -0.08 -8.40 16 29 C 0.24 4.12 8.01 -155.75 -1.25 2.88 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.22 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.16 2.18 7.61 -52.49 -0.40 1.79 16 36 H 0.42 8.81 6.70 -40.82 -0.27 8.54 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.48 7.52 -51.93 -0.39 1.09 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.68 6.82 -51.93 -0.35 0.33 16 44 H 0.08 1.80 4.89 -51.93 -0.25 1.54 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -33.65 364.73 -8.99 -42.63 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.83 Total: 10.60 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: -3.70 Total: 18.58 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -0.53 Total: -75.16 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.29 Total: -18.77 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.13 Total: 16.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.65 -8.99 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051119554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.715 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds