Wall clock time and date at job start Wed Apr 1 2020 03:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35998 * 126.28975 * 2 1 4 4 N 1.30220 * 110.17541 * 179.97438 * 3 2 1 5 5 C 1.35429 * 109.57769 * 0.02562 * 4 3 2 6 6 C 1.39896 * 133.81070 * 179.97438 * 5 4 3 7 7 C 1.36989 * 118.36447 * 180.02562 * 6 5 4 8 8 C 1.39738 * 119.59457 * 0.02562 * 7 6 5 9 9 C 1.47973 * 119.42384 * 179.97438 * 8 7 6 10 10 O 1.21541 * 120.00485 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99497 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99841 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47185 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.67984 * 59.10414 * 13 12 11 15 15 C 1.53296 * 109.68154 * 179.62262 * 13 12 11 16 16 O 1.42967 * 109.22174 * 172.02407 * 15 13 12 17 17 C 1.42954 * 114.16854 * 297.42371 * 16 15 13 18 18 C 1.53293 * 109.22758 * 62.57943 * 17 16 15 19 19 N 1.47155 * 109.68318 * 298.58857 * 13 12 11 20 20 C 1.36938 * 120.98250 * 9.70968 * 19 13 12 21 21 H 1.07998 * 119.99673 * 329.55495 * 20 19 13 22 22 C 1.38810 * 119.99722 * 149.55064 * 20 19 13 23 23 N 1.31622 * 119.99537 * 163.24483 * 22 20 19 24 24 Si 1.86795 * 120.00446 * 343.24740 * 22 20 19 25 25 H 1.48496 * 109.47335 * 88.91499 * 24 22 20 26 26 H 1.48498 * 109.47281 * 208.92137 * 24 22 20 27 27 H 1.48501 * 109.47010 * 328.91607 * 24 22 20 28 28 N 1.32652 * 121.14150 * 359.97438 * 8 7 6 29 29 C 1.31878 * 121.37147 * 0.02562 * 28 8 7 30 30 H 1.09005 * 109.46823 * 90.02343 * 1 2 3 31 31 H 1.09003 * 109.47014 * 210.02106 * 1 2 3 32 32 H 1.08993 * 109.47064 * 330.02338 * 1 2 3 33 33 H 1.07994 * 124.91062 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.81970 * 0.02562 * 6 5 4 35 35 H 1.07991 * 120.20607 * 180.02562 * 7 6 5 36 36 H 0.97002 * 120.00037 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.47374 * 300.00686 * 12 11 9 38 38 H 1.09005 * 109.46826 * 60.00279 * 12 11 9 39 39 H 1.08995 * 109.51517 * 291.95268 * 15 13 12 40 40 H 1.09002 * 109.51115 * 52.05325 * 15 13 12 41 41 H 1.09005 * 109.51231 * 182.50676 * 17 16 15 42 42 H 1.08998 * 109.51333 * 302.65243 * 17 16 15 43 43 H 1.08999 * 109.67857 * 67.41655 * 18 17 16 44 44 H 1.09000 * 109.68668 * 187.97572 * 18 17 16 45 45 H 0.97003 * 119.99782 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.0962 0.0000 4 7 3.5210 0.7348 0.0005 5 6 3.6028 -0.6171 0.0004 6 6 4.6690 -1.5228 0.0003 7 6 4.3846 -2.8628 -0.0005 8 6 3.0527 -3.2856 -0.0016 9 6 2.7498 -4.7340 -0.0030 10 8 3.6556 -5.5444 -0.0026 11 7 1.4693 -5.1546 -0.0047 12 6 1.1694 -6.5885 -0.0066 13 6 -0.3470 -6.7924 -0.0089 14 1 -0.7798 -6.3181 -0.8897 15 6 -0.6663 -8.2917 -0.0204 16 8 -2.0721 -8.4749 0.1648 17 6 -2.5644 -7.9967 1.4189 18 6 -2.3423 -6.4824 1.5041 19 7 -0.9282 -6.2026 1.2076 20 6 -0.1751 -5.4180 2.0397 21 1 0.8868 -5.5922 2.1315 22 6 -0.7766 -4.3988 2.7652 23 7 -0.1513 -3.8652 3.7931 24 14 -2.4735 -3.7846 2.2827 25 1 -3.5081 -4.5876 2.9827 26 1 -2.6109 -2.3569 2.6670 27 1 -2.6503 -3.9212 0.8146 28 7 2.0553 -2.4110 -0.0016 29 6 2.2815 -1.1118 -0.0009 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5134 33 1 1.9220 2.1185 0.0004 34 1 5.6912 -1.1741 0.0008 35 1 5.1847 -3.5881 -0.0001 36 1 0.7464 -4.5078 -0.0054 37 1 1.5988 -7.0484 -0.8966 38 1 1.5971 -7.0504 0.8833 39 1 -0.3661 -8.7206 -0.9764 40 1 -0.1246 -8.7855 0.7864 41 1 -3.6297 -8.2135 1.4983 42 1 -2.0304 -8.4894 2.2314 43 1 -2.9764 -5.9768 0.7759 44 1 -2.5832 -6.1319 2.5077 45 1 -0.5714 -3.1527 4.2998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051119554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:38 Heat of formation + Delta-G solvation = 33.154724 kcal Electronic energy + Delta-G solvation = -31276.617541 eV Core-core repulsion = 27102.979593 eV Total energy + Delta-G solvation = -4173.637948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.41840 -41.13352 -40.21644 -38.90207 -37.05019 -35.63823 -35.35029 -33.64691 -33.05412 -32.54662 -31.03818 -29.24777 -28.13830 -27.35263 -25.59744 -25.21688 -24.22799 -23.57703 -21.89359 -21.75162 -21.50389 -19.39865 -18.92845 -18.47545 -18.05294 -17.68196 -17.33318 -17.21948 -16.78181 -16.51567 -16.08307 -15.94601 -15.76539 -15.64370 -15.50880 -15.18283 -14.75246 -14.49715 -14.44716 -14.26028 -13.94584 -13.87877 -13.58797 -13.48300 -13.38139 -13.07488 -12.84984 -12.36288 -12.32478 -12.14323 -12.05489 -11.88310 -11.58073 -11.43887 -11.27004 -11.03414 -10.52828 -10.32049 -10.00066 -9.82295 -9.57490 -8.86026 -8.11580 -5.50657 -0.61788 0.13102 1.27239 1.28376 1.36474 1.42994 1.46107 1.94603 2.19210 2.41194 2.81191 2.83763 2.92109 3.04144 3.22903 3.23333 3.52269 3.74706 3.89775 3.91736 4.09068 4.11680 4.19241 4.22689 4.26510 4.32343 4.39400 4.46523 4.47915 4.58743 4.63651 4.68134 4.70742 4.81022 4.89935 4.93120 4.96955 5.10120 5.19474 5.42598 5.50727 5.85357 5.89150 6.18295 6.20373 6.44346 6.58748 6.71838 6.85202 7.18564 7.58512 7.98441 9.06393 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.004291 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.255141 B = 6524.462244 C = 7984.630349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.486 5.486 3 C 0.302 3.698 4 N -0.520 5.520 5 C 0.011 3.989 6 C -0.029 4.029 7 C -0.125 4.125 8 C 0.098 3.902 9 C 0.566 3.434 10 O -0.572 6.572 11 N -0.676 5.676 12 C 0.136 3.864 13 C 0.127 3.873 14 H 0.054 0.946 15 C 0.058 3.942 16 O -0.389 6.389 17 C 0.054 3.946 18 C 0.085 3.915 19 N -0.619 5.619 20 C -0.233 4.233 21 H 0.062 0.938 22 C -0.022 4.022 23 N -0.951 5.951 24 Si 0.940 3.060 25 H -0.279 1.279 26 H -0.313 1.313 27 H -0.263 1.263 28 N -0.460 5.460 29 C 0.205 3.795 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.279 0.721 34 H 0.178 0.822 35 H 0.167 0.833 36 H 0.414 0.586 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.117 0.883 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 6.210 -10.765 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.178 5.178 3 C 0.017 3.983 4 N -0.240 5.240 5 C -0.111 4.111 6 C -0.056 4.056 7 C -0.149 4.149 8 C -0.050 4.050 9 C 0.352 3.648 10 O -0.452 6.452 11 N -0.324 5.324 12 C 0.012 3.988 13 C 0.022 3.978 14 H 0.072 0.928 15 C -0.020 4.020 16 O -0.307 6.307 17 C -0.024 4.024 18 C -0.040 4.040 19 N -0.347 5.347 20 C -0.362 4.362 21 H 0.080 0.920 22 C -0.217 4.217 23 N -0.597 5.597 24 Si 0.770 3.230 25 H -0.206 1.206 26 H -0.242 1.242 27 H -0.187 1.187 28 N -0.176 5.176 29 C -0.033 4.033 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.295 0.705 34 H 0.196 0.804 35 H 0.185 0.815 36 H 0.252 0.748 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.299 5.881 -10.799 12.300 hybrid contribution -0.996 0.689 0.828 1.468 sum -1.295 6.570 -9.971 12.011 Atomic orbital electron populations 1.22282 0.73618 1.05558 1.05076 1.45374 1.08863 1.03965 1.59549 1.26652 0.83894 0.94490 0.93288 1.70452 1.19886 1.09414 1.24269 1.20206 0.93393 0.92472 1.05006 1.20715 0.99501 0.89906 0.95504 1.21665 0.96321 0.96931 0.99988 1.20900 0.90251 0.92242 1.01644 1.17917 0.83288 0.86774 0.76870 1.90695 1.46315 1.54731 1.53494 1.45859 1.07277 1.09156 1.70152 1.21286 0.94789 0.80986 1.01750 1.21646 0.91835 0.95089 0.89252 0.92837 1.22999 0.81850 0.93970 1.03183 1.87840 1.23616 1.81735 1.37512 1.23026 1.00466 0.93076 0.85867 1.22117 0.85738 0.96625 0.99488 1.44565 1.08050 1.57979 1.24067 1.18718 0.92938 1.07553 1.16980 0.92021 1.25825 1.00742 0.97612 0.97505 1.69958 1.40665 1.29108 1.19934 0.86061 0.81887 0.75957 0.79126 1.20618 1.24247 1.18719 1.66074 1.37465 1.00931 1.13114 1.19287 0.90688 0.87937 1.05390 0.88448 0.92557 0.85190 0.70543 0.80418 0.81515 0.74848 0.88884 0.93128 0.85586 0.93064 0.86560 0.93248 0.94525 0.91911 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 11.19 127.77 1.43 2.97 16 2 N -0.49 -12.67 3.20 -549.30 -1.76 -14.43 16 3 C 0.30 6.06 12.49 180.04 2.25 8.30 16 4 N -0.52 -14.26 11.27 -191.65 -2.16 -16.42 16 5 C 0.01 0.35 7.25 39.69 0.29 0.64 16 6 C -0.03 -0.84 10.16 22.38 0.23 -0.61 16 7 C -0.13 -4.06 9.55 22.34 0.21 -3.85 16 8 C 0.10 3.82 6.74 41.96 0.28 4.10 16 9 C 0.57 23.72 7.80 86.82 0.68 24.40 16 10 O -0.57 -25.14 16.29 -3.84 -0.06 -25.20 16 11 N -0.68 -27.71 3.78 -465.85 -1.76 -29.47 16 12 C 0.14 4.96 4.44 86.38 0.38 5.34 16 13 C 0.13 4.54 3.20 44.96 0.14 4.68 16 14 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 15 C 0.06 1.74 6.29 72.08 0.45 2.19 16 16 O -0.39 -12.48 10.74 -148.98 -1.60 -14.08 16 17 C 0.05 1.73 6.98 72.08 0.50 2.24 16 18 C 0.09 3.38 4.38 86.35 0.38 3.76 16 19 N -0.62 -26.89 2.78 -673.70 -1.88 -28.77 16 20 C -0.23 -12.14 7.59 84.03 0.64 -11.50 16 21 H 0.06 3.64 5.98 -2.91 -0.02 3.62 16 22 C -0.02 -1.18 5.28 84.86 0.45 -0.74 16 23 N -0.95 -57.62 13.97 21.65 0.30 -57.32 16 24 Si 0.94 43.80 24.28 68.60 1.67 45.47 16 25 H -0.28 -12.46 6.54 99.48 0.65 -11.81 16 26 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 27 H -0.26 -11.69 6.65 99.48 0.66 -11.03 16 28 N -0.46 -18.31 9.54 -181.83 -1.73 -20.04 16 29 C 0.20 7.16 8.01 134.06 1.07 8.23 16 30 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.28 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.17 4.82 7.61 -2.92 -0.02 4.79 16 36 H 0.41 18.11 6.70 -92.71 -0.62 17.49 16 37 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.05 2.09 7.52 -2.38 -0.02 2.07 16 39 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.04 1.44 6.82 -2.39 -0.02 1.43 16 44 H 0.06 2.73 4.89 -2.39 -0.01 2.72 16 45 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -77.63 364.73 0.72 -76.91 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.32 Total: 33.21 kcal Atomic # 6 Polarization: 40.75 SS G_CDS: 9.39 Total: 50.14 kcal Atomic # 7 Polarization: -157.46 SS G_CDS: -8.99 Total: -166.45 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.66 Total: -39.28 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.47 kcal Total: -77.63 0.72 -76.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051119554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.063 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds