Wall clock time and date at job start Wed Apr 1 2020 03:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39805 * 125.33952 * 2 1 4 4 C 1.30195 * 110.13055 * 180.02562 * 3 2 1 5 5 C 1.45970 * 107.59164 * 359.97438 * 4 3 2 6 6 C 1.39660 * 134.12166 * 179.97438 * 5 4 3 7 7 C 1.39502 * 117.94790 * 180.02562 * 6 5 4 8 8 C 1.47686 * 120.40803 * 180.02562 * 7 6 5 9 9 O 1.21569 * 120.00120 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99762 * 180.27822 * 8 7 6 11 11 C 1.46503 * 119.99793 * 179.72270 * 10 8 7 12 12 C 1.52995 * 109.47082 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.67969 * 59.75827 * 12 11 10 14 14 C 1.53298 * 109.68177 * 180.31806 * 12 11 10 15 15 O 1.42963 * 109.22174 * 172.02692 * 14 12 11 16 16 C 1.42966 * 114.16434 * 297.41342 * 15 14 12 17 17 C 1.53297 * 109.22014 * 62.58805 * 16 15 14 18 18 N 1.47151 * 108.38132 * 307.69413 * 17 16 15 19 19 C 1.36939 * 120.98191 * 230.55923 * 18 17 16 20 20 H 1.08000 * 120.00104 * 149.41770 * 19 18 17 21 21 C 1.38818 * 120.00143 * 329.42170 * 19 18 17 22 22 N 1.31612 * 120.00416 * 163.36021 * 21 19 18 23 23 Si 1.86806 * 119.99603 * 343.35782 * 21 19 18 24 24 H 1.48499 * 109.47041 * 88.93435 * 23 21 19 25 25 H 1.48498 * 109.46683 * 208.93212 * 23 21 19 26 26 H 1.48504 * 109.47158 * 328.93205 * 23 21 19 27 27 C 1.40192 * 119.18422 * 0.27719 * 7 6 5 28 28 N 1.31192 * 121.37092 * 359.40601 * 27 7 6 29 29 C 1.32931 * 121.84412 * 0.62433 * 28 27 7 30 30 H 1.09003 * 109.47147 * 270.00186 * 1 2 3 31 31 H 1.08997 * 109.47012 * 30.00336 * 1 2 3 32 32 H 1.08997 * 109.47201 * 150.00299 * 1 2 3 33 33 H 1.08007 * 126.20419 * 180.02562 * 4 3 2 34 34 H 1.07989 * 121.02566 * 0.05944 * 6 5 4 35 35 H 0.96992 * 120.00213 * 359.72071 * 10 8 7 36 36 H 1.09000 * 109.47009 * 299.99902 * 11 10 8 37 37 H 1.09006 * 109.47025 * 59.99584 * 11 10 8 38 38 H 1.09004 * 109.50841 * 291.94691 * 14 12 11 39 39 H 1.08996 * 109.51590 * 52.10052 * 14 12 11 40 40 H 1.08996 * 109.51331 * 302.65803 * 16 15 14 41 41 H 1.08997 * 109.54921 * 182.52972 * 16 15 14 42 42 H 1.09000 * 109.67850 * 187.97789 * 17 16 15 43 43 H 1.08998 * 109.71686 * 67.43434 * 17 16 15 44 44 H 0.96994 * 120.00261 * 180.02562 * 22 21 19 45 45 H 1.07994 * 119.31279 * 179.72251 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7989 -0.0005 5 6 3.5907 -0.6595 -0.0003 6 6 4.6328 -1.5893 -0.0011 7 6 4.3003 -2.9441 -0.0011 8 6 5.3591 -3.9737 -0.0013 9 8 6.5288 -3.6427 -0.0020 10 7 5.0284 -5.2803 -0.0070 11 6 6.0787 -6.3017 -0.0134 12 6 5.4387 -7.6913 -0.0183 13 1 4.8140 -7.8046 -0.9044 14 6 6.5338 -8.7641 -0.0170 15 8 5.9339 -10.0488 0.1657 16 6 5.2548 -10.2055 1.4140 17 6 4.0942 -9.2066 1.4859 18 7 4.6188 -7.8637 1.1914 19 6 4.3522 -6.8057 2.0189 20 1 5.0680 -6.0028 2.1166 21 6 3.1621 -6.7650 2.7323 22 7 3.0359 -5.9475 3.7559 23 14 1.7395 -7.8708 2.2392 24 1 1.8560 -9.1719 2.9454 25 1 0.4564 -7.2206 2.6080 26 1 1.7752 -8.0988 0.7722 27 6 2.9486 -3.3163 -0.0062 28 7 1.9928 -2.4176 0.0006 29 6 2.2553 -1.1145 0.0003 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 4.3743 1.4725 -0.0003 34 1 5.6642 -1.2693 -0.0012 35 1 4.0951 -5.5445 -0.0068 36 1 6.6960 -6.1824 -0.9038 37 1 6.6988 -6.1907 0.8762 38 1 7.0656 -8.7425 -0.9682 39 1 7.2329 -8.5698 0.7963 40 1 5.9493 -10.0164 2.2325 41 1 4.8666 -11.2209 1.4931 42 1 3.6599 -9.2199 2.4856 43 1 3.3338 -9.4728 0.7517 44 1 2.2044 -5.9194 4.2546 45 1 2.6889 -4.3645 -0.0108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051179145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:15 Heat of formation + Delta-G solvation = 68.949258 kcal Electronic energy + Delta-G solvation = -30725.460263 eV Core-core repulsion = 26553.374482 eV Total energy + Delta-G solvation = -4172.085781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.57959 -39.59423 -38.70517 -37.55243 -35.52757 -33.90111 -33.70346 -31.97717 -31.59686 -31.15285 -30.07251 -27.61114 -27.02849 -25.67233 -23.86571 -23.55936 -23.33282 -22.13074 -20.96066 -20.25844 -19.89675 -17.83185 -17.70127 -16.82102 -16.52462 -16.04173 -15.88894 -15.75881 -15.46562 -15.08865 -14.79269 -14.50827 -14.22759 -14.17175 -14.03795 -13.69148 -13.48515 -13.32994 -13.00954 -12.91742 -12.61738 -12.58106 -12.34857 -12.12803 -11.90343 -11.62435 -11.20644 -11.17379 -10.81971 -10.59046 -10.44794 -10.37521 -9.92464 -9.83839 -9.66766 -9.41784 -9.20898 -9.05733 -8.74657 -8.47783 -8.20180 -7.07296 -6.08616 -3.52963 0.77770 0.95121 2.05365 2.36625 3.17987 3.20715 3.36198 3.38834 3.60389 4.03946 4.10260 4.22582 4.26862 4.37167 4.54436 4.61320 4.90283 4.93885 5.10219 5.13182 5.16466 5.28089 5.37191 5.37749 5.41437 5.49687 5.58742 5.65046 5.75811 5.86432 5.87696 5.96341 6.08072 6.11135 6.15975 6.21942 6.31870 6.41776 6.47617 6.67900 6.71663 6.98418 7.32450 7.56468 7.75876 7.88191 8.09009 8.20059 8.70604 8.74314 9.53254 9.90518 11.04800 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.003465 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.460104 B = 8079.194270 C = 9396.478129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.396 5.396 3 N -0.246 5.246 4 C 0.095 3.905 5 C -0.241 4.241 6 C 0.067 3.933 7 C -0.218 4.218 8 C 0.569 3.431 9 O -0.559 6.559 10 N -0.689 5.689 11 C 0.137 3.863 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.054 3.946 15 O -0.388 6.388 16 C 0.046 3.954 17 C 0.090 3.910 18 N -0.607 5.607 19 C -0.273 4.273 20 H 0.098 0.902 21 C 0.032 3.968 22 N -0.897 5.897 23 Si 0.878 3.122 24 H -0.287 1.287 25 H -0.302 1.302 26 H -0.269 1.269 27 C 0.218 3.782 28 N -0.506 5.506 29 C 0.328 3.672 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.204 0.796 34 H 0.153 0.847 35 H 0.410 0.590 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.034 0.966 44 H 0.264 0.736 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 6.001 -9.085 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.186 5.186 3 N -0.058 5.058 4 C -0.104 4.104 5 C -0.251 4.251 6 C 0.038 3.962 7 C -0.225 4.225 8 C 0.355 3.645 9 O -0.439 6.439 10 N -0.340 5.340 11 C 0.013 3.987 12 C 0.021 3.979 13 H 0.065 0.935 14 C -0.025 4.025 15 O -0.306 6.306 16 C -0.032 4.032 17 C -0.035 4.035 18 N -0.334 5.334 19 C -0.400 4.400 20 H 0.115 0.885 21 C -0.168 4.168 22 N -0.539 5.539 23 Si 0.708 3.292 24 H -0.215 1.215 25 H -0.230 1.230 26 H -0.194 1.194 27 C 0.048 3.952 28 N -0.220 5.220 29 C 0.089 3.911 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.220 0.780 34 H 0.170 0.830 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.382 6.961 -9.074 11.520 hybrid contribution -0.261 -1.044 0.385 1.142 sum -1.643 5.918 -8.689 10.641 Atomic orbital electron populations 1.21812 0.73429 1.04283 1.03376 1.48037 1.06272 1.00072 1.64261 1.76668 1.02738 1.07568 1.18836 1.25075 0.94804 0.92624 0.97913 1.20429 0.94107 0.94655 1.15951 1.21109 0.99080 0.90047 0.85955 1.20703 0.95081 0.94541 1.12188 1.17684 0.87650 0.82450 0.76726 1.90717 1.19162 1.81849 1.52203 1.45830 1.11361 1.04443 1.72327 1.21171 0.89994 0.85964 1.01566 1.21465 0.92943 0.92762 0.90768 0.93511 1.22910 0.94562 0.83806 1.01187 1.87831 1.72035 1.32596 1.38182 1.23065 0.95025 0.99211 0.85916 1.22064 0.95012 0.85824 1.00584 1.44434 1.60546 1.04533 1.23855 1.19024 1.01348 1.00666 1.18990 0.88473 1.25336 0.97317 0.96938 0.97255 1.69787 1.26683 1.39171 1.18225 0.87075 0.82948 0.79846 0.79340 1.21463 1.23020 1.19450 1.22971 0.86928 0.98422 0.86892 1.66702 1.37495 0.98351 1.19435 1.19150 0.88611 0.88248 0.95096 0.91051 0.89555 0.89108 0.77990 0.82956 0.75147 0.91763 0.90867 0.89330 0.92869 0.93000 0.89782 0.90037 0.94769 0.92555 0.81227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.14 11.43 59.85 0.68 1.83 16 2 N -0.40 -5.54 4.03 -67.17 -0.27 -5.81 16 3 N -0.25 -3.25 12.39 31.87 0.39 -2.86 16 4 C 0.09 1.10 12.30 -15.15 -0.19 0.91 16 5 C -0.24 -3.48 6.36 -105.20 -0.67 -4.15 16 6 C 0.07 0.99 9.76 -38.58 -0.38 0.61 16 7 C -0.22 -3.62 5.89 -104.83 -0.62 -4.24 16 8 C 0.57 10.37 7.77 -12.40 -0.10 10.27 16 9 O -0.56 -11.32 16.40 5.30 0.09 -11.24 16 10 N -0.69 -12.21 3.72 -61.30 -0.23 -12.44 16 11 C 0.14 2.33 4.44 -4.04 -0.02 2.31 16 12 C 0.13 2.20 3.21 -67.42 -0.22 1.99 16 13 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.05 0.84 6.29 37.31 0.23 1.08 16 15 O -0.39 -6.66 10.74 -35.23 -0.38 -7.04 16 16 C 0.05 0.78 6.99 37.31 0.26 1.04 16 17 C 0.09 1.80 4.38 -3.53 -0.02 1.79 16 18 N -0.61 -12.65 2.78 -164.30 -0.46 -13.11 16 19 C -0.27 -6.57 7.54 -15.06 -0.11 -6.68 16 20 H 0.10 2.57 5.98 -52.49 -0.31 2.25 16 21 C 0.03 0.83 5.29 -17.43 -0.09 0.74 16 22 N -0.90 -25.31 13.97 55.49 0.78 -24.53 16 23 Si 0.88 20.35 24.28 -169.99 -4.13 16.22 16 24 H -0.29 -6.55 6.54 56.52 0.37 -6.18 16 25 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.27 -6.05 6.64 56.52 0.38 -5.68 16 27 C 0.22 3.63 10.69 -17.09 -0.18 3.45 16 28 N -0.51 -8.57 10.37 -12.02 -0.12 -8.69 16 29 C 0.33 5.22 7.96 -156.09 -1.24 3.98 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.20 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.15 1.98 7.72 -52.49 -0.41 1.57 16 35 H 0.41 7.35 5.37 -40.82 -0.22 7.13 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.39 7.56 -51.93 -0.39 1.00 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.76 4.89 -51.93 -0.25 1.51 16 43 H 0.03 0.69 6.81 -51.93 -0.35 0.34 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.17 2.71 6.39 -52.49 -0.34 2.38 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -32.32 363.61 -7.19 -39.51 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.69 Total: 9.57 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: -2.65 Total: 14.94 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: 0.09 Total: -67.45 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.29 Total: -18.28 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.13 Total: 16.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.32 -7.19 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051179145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.464 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds