Wall clock time and date at job start Wed Apr 1 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39805 * 125.33952 * 2 1 4 4 C 1.30195 * 110.13055 * 180.02562 * 3 2 1 5 5 C 1.45970 * 107.59164 * 359.97438 * 4 3 2 6 6 C 1.39660 * 134.12166 * 179.97438 * 5 4 3 7 7 C 1.39502 * 117.94790 * 180.02562 * 6 5 4 8 8 C 1.47686 * 120.40803 * 180.02562 * 7 6 5 9 9 O 1.21569 * 120.00120 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99762 * 180.27822 * 8 7 6 11 11 C 1.46503 * 119.99793 * 179.72270 * 10 8 7 12 12 C 1.52995 * 109.47082 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.67969 * 59.75827 * 12 11 10 14 14 C 1.53298 * 109.68177 * 180.31806 * 12 11 10 15 15 O 1.42963 * 109.22174 * 172.02692 * 14 12 11 16 16 C 1.42966 * 114.16434 * 297.41342 * 15 14 12 17 17 C 1.53297 * 109.22014 * 62.58805 * 16 15 14 18 18 N 1.47151 * 108.38132 * 307.69413 * 17 16 15 19 19 C 1.36939 * 120.98191 * 230.55923 * 18 17 16 20 20 H 1.08000 * 120.00104 * 149.41770 * 19 18 17 21 21 C 1.38818 * 120.00143 * 329.42170 * 19 18 17 22 22 N 1.31612 * 120.00416 * 163.36021 * 21 19 18 23 23 Si 1.86806 * 119.99603 * 343.35782 * 21 19 18 24 24 H 1.48499 * 109.47041 * 88.93435 * 23 21 19 25 25 H 1.48498 * 109.46683 * 208.93212 * 23 21 19 26 26 H 1.48504 * 109.47158 * 328.93205 * 23 21 19 27 27 C 1.40192 * 119.18422 * 0.27719 * 7 6 5 28 28 N 1.31192 * 121.37092 * 359.40601 * 27 7 6 29 29 C 1.32931 * 121.84412 * 0.62433 * 28 27 7 30 30 H 1.09003 * 109.47147 * 270.00186 * 1 2 3 31 31 H 1.08997 * 109.47012 * 30.00336 * 1 2 3 32 32 H 1.08997 * 109.47201 * 150.00299 * 1 2 3 33 33 H 1.08007 * 126.20419 * 180.02562 * 4 3 2 34 34 H 1.07989 * 121.02566 * 0.05944 * 6 5 4 35 35 H 0.96992 * 120.00213 * 359.72071 * 10 8 7 36 36 H 1.09000 * 109.47009 * 299.99902 * 11 10 8 37 37 H 1.09006 * 109.47025 * 59.99584 * 11 10 8 38 38 H 1.09004 * 109.50841 * 291.94691 * 14 12 11 39 39 H 1.08996 * 109.51590 * 52.10052 * 14 12 11 40 40 H 1.08996 * 109.51331 * 302.65803 * 16 15 14 41 41 H 1.08997 * 109.54921 * 182.52972 * 16 15 14 42 42 H 1.09000 * 109.67850 * 187.97789 * 17 16 15 43 43 H 1.08998 * 109.71686 * 67.43434 * 17 16 15 44 44 H 0.96994 * 120.00261 * 180.02562 * 22 21 19 45 45 H 1.07994 * 119.31279 * 179.72251 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7989 -0.0005 5 6 3.5907 -0.6595 -0.0003 6 6 4.6328 -1.5893 -0.0011 7 6 4.3003 -2.9441 -0.0011 8 6 5.3591 -3.9737 -0.0013 9 8 6.5288 -3.6427 -0.0020 10 7 5.0284 -5.2803 -0.0070 11 6 6.0787 -6.3017 -0.0134 12 6 5.4387 -7.6913 -0.0183 13 1 4.8140 -7.8046 -0.9044 14 6 6.5338 -8.7641 -0.0170 15 8 5.9339 -10.0488 0.1657 16 6 5.2548 -10.2055 1.4140 17 6 4.0942 -9.2066 1.4859 18 7 4.6188 -7.8637 1.1914 19 6 4.3522 -6.8057 2.0189 20 1 5.0680 -6.0028 2.1166 21 6 3.1621 -6.7650 2.7323 22 7 3.0359 -5.9475 3.7559 23 14 1.7395 -7.8708 2.2392 24 1 1.8560 -9.1719 2.9454 25 1 0.4564 -7.2206 2.6080 26 1 1.7752 -8.0988 0.7722 27 6 2.9486 -3.3163 -0.0062 28 7 1.9928 -2.4176 0.0006 29 6 2.2553 -1.1145 0.0003 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 4.3743 1.4725 -0.0003 34 1 5.6642 -1.2693 -0.0012 35 1 4.0951 -5.5445 -0.0068 36 1 6.6960 -6.1824 -0.9038 37 1 6.6988 -6.1907 0.8762 38 1 7.0656 -8.7425 -0.9682 39 1 7.2329 -8.5698 0.7963 40 1 5.9493 -10.0164 2.2325 41 1 4.8666 -11.2209 1.4931 42 1 3.6599 -9.2199 2.4856 43 1 3.3338 -9.4728 0.7517 44 1 2.2044 -5.9194 4.2546 45 1 2.6889 -4.3645 -0.0108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051179145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:14 Heat of formation + Delta-G solvation = 45.634453 kcal Electronic energy + Delta-G solvation = -30726.471269 eV Core-core repulsion = 26553.374482 eV Total energy + Delta-G solvation = -4173.096787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.69228 -40.99489 -40.09077 -38.79579 -37.02190 -35.36202 -34.89575 -33.64288 -32.93681 -32.52031 -31.27747 -29.22022 -28.07670 -26.96482 -25.19026 -25.04670 -24.68038 -23.53777 -21.99028 -21.66082 -21.39951 -19.26853 -18.79666 -18.38602 -17.92374 -17.55891 -17.10673 -16.96736 -16.76017 -16.61496 -16.14399 -15.98660 -15.62907 -15.54968 -15.25647 -15.05135 -14.69002 -14.42112 -14.40295 -14.35007 -14.16848 -13.82697 -13.47260 -13.42563 -13.33461 -13.09496 -12.79192 -12.31933 -12.28393 -12.26308 -12.00507 -11.59368 -11.54194 -11.38482 -11.21745 -10.98665 -10.57721 -10.46946 -10.20475 -9.91906 -9.38924 -8.82406 -8.09257 -5.48565 -0.35816 -0.29622 1.05207 1.32241 1.35542 1.45195 1.51800 1.84179 2.25065 2.44632 2.75401 2.90155 3.01499 3.07992 3.18783 3.26287 3.50849 3.69882 3.75694 3.96839 4.00051 4.15696 4.25883 4.28560 4.30903 4.34400 4.39321 4.43948 4.47783 4.51535 4.61242 4.65847 4.74542 4.76611 4.92166 4.95660 4.97993 5.11194 5.25877 5.35393 5.56203 5.63871 5.88864 6.22718 6.24748 6.27449 6.62773 6.70516 6.88016 7.26820 7.61786 8.02927 9.07723 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.003465 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.460104 B = 8079.194270 C = 9396.478129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.402 5.402 3 N -0.258 5.258 4 C 0.113 3.887 5 C -0.249 4.249 6 C 0.077 3.923 7 C -0.237 4.237 8 C 0.569 3.431 9 O -0.583 6.583 10 N -0.691 5.691 11 C 0.140 3.860 12 C 0.127 3.873 13 H 0.060 0.940 14 C 0.056 3.944 15 O -0.390 6.390 16 C 0.053 3.947 17 C 0.084 3.916 18 N -0.620 5.620 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.018 4.018 22 N -0.948 5.948 23 Si 0.930 3.070 24 H -0.280 1.280 25 H -0.321 1.321 26 H -0.256 1.256 27 C 0.211 3.789 28 N -0.523 5.523 29 C 0.306 3.694 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.171 0.829 35 H 0.408 0.592 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.126 0.874 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.257 0.743 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 5.917 -10.869 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.192 5.192 3 N -0.069 5.069 4 C -0.085 4.085 5 C -0.259 4.259 6 C 0.048 3.952 7 C -0.245 4.245 8 C 0.357 3.643 9 O -0.465 6.465 10 N -0.340 5.340 11 C 0.016 3.984 12 C 0.022 3.978 13 H 0.077 0.923 14 C -0.022 4.022 15 O -0.308 6.308 16 C -0.025 4.025 17 C -0.041 4.041 18 N -0.347 5.347 19 C -0.364 4.364 20 H 0.088 0.912 21 C -0.214 4.214 22 N -0.594 5.594 23 Si 0.760 3.240 24 H -0.207 1.207 25 H -0.250 1.250 26 H -0.180 1.180 27 C 0.041 3.959 28 N -0.238 5.238 29 C 0.066 3.934 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.266 0.734 34 H 0.189 0.811 35 H 0.246 0.754 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.143 0.857 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.696 6.841 -10.904 12.891 hybrid contribution -0.405 -0.936 0.896 1.357 sum -1.101 5.904 -10.009 11.672 Atomic orbital electron populations 1.22058 0.71832 1.05553 1.04100 1.48415 1.07405 0.99617 1.63731 1.76687 1.03342 1.07310 1.19596 1.25834 0.95511 0.91627 0.95518 1.20710 0.93315 0.96191 1.15700 1.21313 1.00115 0.89343 0.84382 1.20622 0.94524 0.95084 1.14261 1.17891 0.87661 0.82755 0.76018 1.90688 1.20069 1.82195 1.53584 1.45854 1.11397 1.04688 1.72075 1.21198 0.89762 0.85752 1.01653 1.21663 0.93177 0.93587 0.89416 0.92287 1.23022 0.93662 0.82452 1.03071 1.87844 1.71884 1.33115 1.37990 1.23015 0.93703 0.99775 0.85981 1.22116 0.96412 0.85987 0.99549 1.44579 1.60915 1.04318 1.24902 1.18808 0.99797 1.00244 1.17568 0.91232 1.25776 0.99457 0.98529 0.97628 1.69921 1.26854 1.42277 1.20320 0.86220 0.79660 0.78433 0.79673 1.20738 1.25049 1.17987 1.22926 0.87160 0.98462 0.87381 1.66652 1.37748 0.99163 1.20281 1.19504 0.90082 0.88363 0.95408 0.90581 0.87127 0.89052 0.73367 0.81122 0.75393 0.89035 0.93330 0.85667 0.93234 0.93358 0.86822 0.91968 0.94365 0.93364 0.81557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.05 11.43 127.77 1.46 3.51 16 2 N -0.40 -10.86 4.03 -366.44 -1.48 -12.34 16 3 N -0.26 -6.29 12.39 -53.08 -0.66 -6.95 16 4 C 0.11 2.34 12.30 86.94 1.07 3.41 16 5 C -0.25 -6.89 6.36 -20.24 -0.13 -7.02 16 6 C 0.08 2.23 9.76 22.92 0.22 2.45 16 7 C -0.24 -8.01 5.89 -20.00 -0.12 -8.13 16 8 C 0.57 21.02 7.77 86.74 0.67 21.69 16 9 O -0.58 -23.65 16.40 -3.93 -0.06 -23.72 16 10 N -0.69 -24.65 3.72 -466.12 -1.73 -26.38 16 11 C 0.14 4.64 4.44 86.38 0.38 5.02 16 12 C 0.13 4.16 3.21 44.97 0.14 4.31 16 13 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 14 C 0.06 1.58 6.29 72.08 0.45 2.04 16 15 O -0.39 -12.08 10.74 -148.98 -1.60 -13.68 16 16 C 0.05 1.67 6.99 72.08 0.50 2.17 16 17 C 0.08 3.21 4.38 86.35 0.38 3.59 16 18 N -0.62 -25.31 2.78 -673.72 -1.87 -27.18 16 19 C -0.23 -11.49 7.54 84.03 0.63 -10.86 16 20 H 0.07 3.80 5.98 -2.91 -0.02 3.78 16 21 C -0.02 -0.95 5.29 84.86 0.45 -0.50 16 22 N -0.95 -55.62 13.97 21.65 0.30 -55.31 16 23 Si 0.93 42.68 24.28 68.60 1.67 44.35 16 24 H -0.28 -12.41 6.54 99.48 0.65 -11.76 16 25 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 26 H -0.26 -10.98 6.64 99.48 0.66 -10.32 16 27 C 0.21 7.27 10.69 85.26 0.91 8.18 16 28 N -0.52 -18.15 10.37 -191.96 -1.99 -20.14 16 29 C 0.31 9.68 7.96 134.18 1.07 10.75 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.25 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.17 4.19 7.72 -2.92 -0.02 4.17 16 35 H 0.41 14.86 5.37 -92.71 -0.50 14.36 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 1.86 7.56 -2.38 -0.02 1.84 16 38 H 0.13 2.65 8.14 -2.38 -0.02 2.63 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.06 2.62 4.89 -2.39 -0.01 2.61 16 43 H 0.04 1.44 6.81 -2.39 -0.02 1.43 16 44 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.17 5.61 6.39 -2.91 -0.02 5.60 16 Total: -1.00 -71.18 363.61 1.12 -70.06 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.45 Total: 30.69 kcal Atomic # 6 Polarization: 32.50 SS G_CDS: 8.11 Total: 40.60 kcal Atomic # 7 Polarization: -140.87 SS G_CDS: -7.43 Total: -148.30 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -1.66 Total: -37.40 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.67 Total: 44.35 kcal Total: -71.18 1.12 -70.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051179145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.692 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds