Wall clock time and date at job start Wed Apr 1 2020 03:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40245 * 126.66717 * 2 1 4 4 N 1.28660 * 109.42507 * 179.97438 * 3 2 1 5 5 C 1.35397 * 110.10817 * 0.02562 * 4 3 2 6 6 C 1.40113 * 133.03106 * 180.02562 * 5 4 3 7 7 C 1.37603 * 120.15275 * 180.02562 * 6 5 4 8 8 C 1.38485 * 120.79826 * 359.97438 * 7 6 5 9 9 C 1.39221 * 120.27784 * 359.97438 * 8 7 6 10 10 C 1.47525 * 120.24233 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99320 * 223.61122 * 10 9 8 12 12 N 1.34774 * 120.00314 * 43.61761 * 10 9 8 13 13 C 1.46506 * 119.99692 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46796 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.67989 * 59.74471 * 14 13 12 16 16 C 1.53299 * 109.68023 * 180.25911 * 14 13 12 17 17 O 1.42965 * 109.22098 * 172.06772 * 16 14 13 18 18 C 1.42968 * 114.16796 * 297.41995 * 17 16 14 19 19 C 1.53299 * 109.22150 * 62.57978 * 18 17 16 20 20 N 1.47148 * 109.68887 * 299.22632 * 14 13 12 21 21 C 1.36945 * 120.97594 * 9.67365 * 20 14 13 22 22 H 1.07993 * 120.00440 * 328.30595 * 21 20 14 23 23 C 1.38813 * 119.99493 * 148.30413 * 21 20 14 24 24 N 1.31620 * 120.00453 * 349.20327 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 169.20820 * 23 21 20 26 26 H 1.48503 * 109.47413 * 89.99650 * 25 23 21 27 27 H 1.48493 * 109.47330 * 209.99840 * 25 23 21 28 28 H 1.48510 * 109.46803 * 330.00089 * 25 23 21 29 29 C 1.36974 * 126.66106 * 180.25038 * 2 1 3 30 30 H 1.09008 * 109.47209 * 95.51686 * 1 2 3 31 31 H 1.08998 * 109.47781 * 215.51767 * 1 2 3 32 32 H 1.08998 * 109.47222 * 335.52453 * 1 2 3 33 33 H 1.08001 * 119.92675 * 359.97438 * 6 5 4 34 34 H 1.07990 * 119.60155 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.86248 * 179.97438 * 8 7 6 36 36 H 0.96993 * 120.00106 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.46729 * 60.00291 * 13 12 10 38 38 H 1.08991 * 109.47400 * 299.99813 * 13 12 10 39 39 H 1.09000 * 109.51549 * 291.98661 * 16 14 13 40 40 H 1.08996 * 109.51222 * 52.09712 * 16 14 13 41 41 H 1.08992 * 109.51659 * 182.50424 * 18 17 16 42 42 H 1.08999 * 109.51239 * 302.66085 * 18 17 16 43 43 H 1.09000 * 109.68255 * 67.42265 * 19 18 17 44 44 H 1.08999 * 109.68041 * 187.97387 * 19 18 17 45 45 H 0.96995 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3024 1.1249 0.0000 4 7 3.5312 0.7436 0.0005 5 6 3.5989 -0.6087 0.0004 6 6 4.6696 -1.5124 0.0012 7 6 4.4304 -2.8675 0.0002 8 6 3.1357 -3.3590 -0.0011 9 6 2.0528 -2.4840 -0.0009 10 6 0.6739 -3.0084 -0.0029 11 8 -0.1647 -2.5108 -0.7294 12 7 0.3436 -4.0388 0.8006 13 6 -1.0260 -4.5591 0.7989 14 6 -1.1323 -5.7184 1.7917 15 1 -0.8752 -5.3697 2.7920 16 6 -2.5623 -6.2708 1.7892 17 8 -2.6073 -7.4638 2.5757 18 6 -1.7942 -8.5271 2.0736 19 6 -0.3249 -8.0901 2.0907 20 7 -0.2160 -6.7984 1.3927 21 6 0.7091 -6.6075 0.4011 22 1 0.4924 -5.9379 -0.4180 23 6 1.9254 -7.2748 0.4490 24 7 2.2797 -7.9199 1.5401 25 14 3.0594 -7.2572 -1.0353 26 1 3.9768 -6.0931 -0.9436 27 1 3.8532 -8.5117 -1.0668 28 1 2.2495 -7.1525 -2.2758 29 6 2.2828 -1.0988 -0.0048 30 1 -0.3634 -0.0988 -1.0230 31 1 -0.3634 -0.8364 0.5970 32 1 -0.3633 0.9353 0.4258 33 1 5.6851 -1.1447 0.0018 34 1 5.2623 -3.5561 0.0004 35 1 2.9653 -4.4254 -0.0023 36 1 1.0125 -4.4359 1.3798 37 1 -1.2790 -4.9129 -0.2006 38 1 -1.7160 -3.7670 1.0895 39 1 -3.2397 -5.5296 2.2130 40 1 -2.8634 -6.4967 0.7663 41 1 -1.9190 -9.4089 2.7019 42 1 -2.0922 -8.7620 1.0518 43 1 0.0135 -7.9802 3.1210 44 1 0.2857 -8.8353 1.5808 45 1 3.1298 -8.3859 1.5737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051270330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:14 Heat of formation + Delta-G solvation = 70.570946 kcal Electronic energy + Delta-G solvation = -31445.972020 eV Core-core repulsion = 27273.956561 eV Total energy + Delta-G solvation = -4172.015459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09742 -39.58727 -38.47634 -37.24719 -35.52856 -34.45227 -33.71944 -31.94232 -30.87943 -30.36032 -30.21032 -27.51145 -27.27922 -25.80140 -24.17320 -23.58876 -22.62469 -22.33181 -21.50229 -19.98599 -19.65914 -18.08633 -17.45383 -16.78321 -16.34945 -16.18518 -15.96981 -15.77774 -15.37496 -15.04887 -14.85176 -14.54668 -14.28503 -14.00466 -13.79568 -13.62619 -13.41378 -13.13268 -12.96524 -12.64002 -12.41814 -12.25560 -12.07509 -11.91037 -11.71471 -11.56631 -11.16171 -11.07540 -10.94384 -10.85733 -10.62735 -10.52564 -10.37979 -10.18335 -9.78647 -9.68022 -9.09788 -8.89311 -8.82899 -8.52294 -8.25497 -6.85520 -6.04285 -3.55005 0.30764 1.25053 2.04170 2.13030 2.96267 3.10054 3.24983 3.28615 3.47373 3.65922 4.06194 4.19186 4.43017 4.47805 4.65107 4.85363 4.96506 5.05017 5.12585 5.14791 5.24870 5.30694 5.44689 5.55654 5.61210 5.65522 5.73053 5.80204 5.86003 5.91836 5.96986 6.05314 6.10380 6.20546 6.23002 6.30278 6.41396 6.49262 6.61946 6.65151 6.85256 6.95976 7.38128 7.55476 7.76673 7.94426 7.97538 8.15540 8.51150 8.91292 9.51643 10.12206 11.01933 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.004239 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.382230 B = 6604.047387 C = 8311.125058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.383 5.383 3 N -0.016 5.016 4 N -0.221 5.221 5 C -0.029 4.029 6 C -0.018 4.018 7 C -0.137 4.137 8 C -0.027 4.027 9 C -0.131 4.131 10 C 0.552 3.448 11 O -0.557 6.557 12 N -0.681 5.681 13 C 0.134 3.866 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.035 3.965 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.259 4.259 22 H 0.072 0.928 23 C 0.011 3.989 24 N -0.895 5.895 25 Si 0.885 3.115 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.278 1.278 29 C 0.127 3.873 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.418 0.582 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.091 0.909 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 7.168 -0.021 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.177 5.177 3 N 0.004 4.996 4 N -0.099 5.099 5 C -0.154 4.154 6 C -0.041 4.041 7 C -0.158 4.158 8 C -0.049 4.049 9 C -0.138 4.138 10 C 0.338 3.662 11 O -0.439 6.439 12 N -0.331 5.331 13 C 0.010 3.990 14 C 0.017 3.983 15 H 0.060 0.940 16 C -0.023 4.023 17 O -0.310 6.310 18 C -0.043 4.043 19 C 0.019 3.981 20 N -0.317 5.317 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.189 4.189 24 N -0.538 5.538 25 Si 0.714 3.286 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 C 0.004 3.996 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.257 0.743 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.852 8.944 -0.301 9.138 hybrid contribution 0.961 -1.475 -0.801 1.934 sum -0.891 7.469 -1.102 7.602 Atomic orbital electron populations 1.22179 0.71953 1.04105 1.05112 1.50009 1.08216 1.03075 1.56371 1.81576 0.94068 1.07830 1.16167 1.74804 1.11480 1.10308 1.13340 1.19851 0.93009 0.90196 1.12300 1.20571 0.97443 0.91308 0.94735 1.20994 0.97331 0.94652 1.02851 1.21764 0.91189 1.00816 0.91138 1.18921 0.95008 0.89123 1.10770 1.17983 0.86830 0.80513 0.80882 1.90737 1.50865 1.60479 1.41794 1.46033 1.13477 1.31769 1.41833 1.21237 0.82431 0.94672 1.00615 1.21438 0.91654 0.89186 0.95994 0.94030 1.22854 0.96741 0.87409 0.95283 1.87813 1.67843 1.22877 1.52497 1.23354 0.94135 0.89016 0.97830 1.21420 0.91091 0.88926 0.96662 1.44084 1.38823 1.06621 1.42152 1.19208 0.93189 1.26791 0.99694 0.91014 1.25164 0.96648 1.00709 0.96379 1.69961 1.22182 1.36207 1.25419 0.86615 0.81106 0.77856 0.83027 1.20324 1.21292 1.20273 1.18975 0.90942 0.89164 1.00524 0.89202 0.88761 0.89438 0.84145 0.83926 0.82855 0.74308 0.91079 0.92095 0.89922 0.93462 0.90189 0.94083 0.95150 0.89053 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.35 9.73 59.84 0.58 1.93 16 2 N -0.38 -5.93 4.10 -65.28 -0.27 -6.20 16 3 N -0.02 -0.27 13.72 60.35 0.83 0.56 16 4 N -0.22 -3.59 12.40 32.15 0.40 -3.19 16 5 C -0.03 -0.45 7.26 -84.76 -0.62 -1.07 16 6 C -0.02 -0.23 10.09 -39.11 -0.39 -0.63 16 7 C -0.14 -1.77 9.98 -39.72 -0.40 -2.17 16 8 C -0.03 -0.41 9.38 -39.13 -0.37 -0.78 16 9 C -0.13 -2.13 5.73 -104.92 -0.60 -2.73 16 10 C 0.55 9.46 6.45 -12.48 -0.08 9.38 16 11 O -0.56 -10.25 13.65 5.28 0.07 -10.17 16 12 N -0.68 -11.55 3.73 -61.35 -0.23 -11.78 16 13 C 0.13 2.21 4.45 -4.04 -0.02 2.19 16 14 C 0.12 2.21 3.20 -67.42 -0.22 2.00 16 15 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.06 0.91 6.29 37.31 0.23 1.15 16 17 O -0.39 -7.15 10.74 -35.23 -0.38 -7.53 16 18 C 0.03 0.62 6.99 37.31 0.26 0.88 16 19 C 0.14 3.06 5.38 -3.49 -0.02 3.04 16 20 N -0.59 -12.49 3.03 -164.24 -0.50 -12.99 16 21 C -0.26 -5.83 7.04 -15.05 -0.11 -5.94 16 22 H 0.07 1.64 5.84 -52.49 -0.31 1.34 16 23 C 0.01 0.26 5.06 -17.43 -0.09 0.17 16 24 N -0.89 -22.19 11.19 55.49 0.62 -21.57 16 25 Si 0.89 18.60 28.49 -169.99 -4.84 13.76 16 26 H -0.28 -5.36 6.51 56.52 0.37 -4.99 16 27 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 29 C 0.13 2.07 6.80 -83.92 -0.57 1.50 16 30 H 0.09 1.14 7.76 -51.92 -0.40 0.74 16 31 H 0.09 1.24 6.11 -51.93 -0.32 0.92 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.15 2.55 6.23 -52.49 -0.33 2.23 16 36 H 0.42 7.51 7.00 -40.82 -0.29 7.22 16 37 H 0.07 1.28 7.55 -51.93 -0.39 0.89 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.14 6.38 -51.93 -0.33 1.81 16 45 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -27.40 362.03 -6.99 -34.40 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.76 Total: 10.32 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -2.40 Total: 8.94 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.85 Total: -55.16 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.31 Total: -17.70 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.84 Total: 13.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.40 -6.99 -34.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051270330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.969 kcal (2) G-P(sol) polarization free energy of solvation -27.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds