Wall clock time and date at job start Wed Apr 1 2020 03:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40245 * 126.66717 * 2 1 4 4 N 1.28660 * 109.42507 * 179.97438 * 3 2 1 5 5 C 1.35397 * 110.10817 * 0.02562 * 4 3 2 6 6 C 1.40113 * 133.03106 * 180.02562 * 5 4 3 7 7 C 1.37603 * 120.15275 * 180.02562 * 6 5 4 8 8 C 1.38485 * 120.79826 * 359.97438 * 7 6 5 9 9 C 1.39221 * 120.27784 * 359.97438 * 8 7 6 10 10 C 1.47525 * 120.24233 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99320 * 223.61122 * 10 9 8 12 12 N 1.34774 * 120.00314 * 43.61761 * 10 9 8 13 13 C 1.46506 * 119.99692 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46796 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.67989 * 59.74471 * 14 13 12 16 16 C 1.53299 * 109.68023 * 180.25911 * 14 13 12 17 17 O 1.42965 * 109.22098 * 172.06772 * 16 14 13 18 18 C 1.42968 * 114.16796 * 297.41995 * 17 16 14 19 19 C 1.53299 * 109.22150 * 62.57978 * 18 17 16 20 20 N 1.47148 * 109.68887 * 299.22632 * 14 13 12 21 21 C 1.36945 * 120.97594 * 9.67365 * 20 14 13 22 22 H 1.07993 * 120.00440 * 328.30595 * 21 20 14 23 23 C 1.38813 * 119.99493 * 148.30413 * 21 20 14 24 24 N 1.31620 * 120.00453 * 349.20327 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 169.20820 * 23 21 20 26 26 H 1.48503 * 109.47413 * 89.99650 * 25 23 21 27 27 H 1.48493 * 109.47330 * 209.99840 * 25 23 21 28 28 H 1.48510 * 109.46803 * 330.00089 * 25 23 21 29 29 C 1.36974 * 126.66106 * 180.25038 * 2 1 3 30 30 H 1.09008 * 109.47209 * 95.51686 * 1 2 3 31 31 H 1.08998 * 109.47781 * 215.51767 * 1 2 3 32 32 H 1.08998 * 109.47222 * 335.52453 * 1 2 3 33 33 H 1.08001 * 119.92675 * 359.97438 * 6 5 4 34 34 H 1.07990 * 119.60155 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.86248 * 179.97438 * 8 7 6 36 36 H 0.96993 * 120.00106 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.46729 * 60.00291 * 13 12 10 38 38 H 1.08991 * 109.47400 * 299.99813 * 13 12 10 39 39 H 1.09000 * 109.51549 * 291.98661 * 16 14 13 40 40 H 1.08996 * 109.51222 * 52.09712 * 16 14 13 41 41 H 1.08992 * 109.51659 * 182.50424 * 18 17 16 42 42 H 1.08999 * 109.51239 * 302.66085 * 18 17 16 43 43 H 1.09000 * 109.68255 * 67.42265 * 19 18 17 44 44 H 1.08999 * 109.68041 * 187.97387 * 19 18 17 45 45 H 0.96995 * 120.00339 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3024 1.1249 0.0000 4 7 3.5312 0.7436 0.0005 5 6 3.5989 -0.6087 0.0004 6 6 4.6696 -1.5124 0.0012 7 6 4.4304 -2.8675 0.0002 8 6 3.1357 -3.3590 -0.0011 9 6 2.0528 -2.4840 -0.0009 10 6 0.6739 -3.0084 -0.0029 11 8 -0.1647 -2.5108 -0.7294 12 7 0.3436 -4.0388 0.8006 13 6 -1.0260 -4.5591 0.7989 14 6 -1.1323 -5.7184 1.7917 15 1 -0.8752 -5.3697 2.7920 16 6 -2.5623 -6.2708 1.7892 17 8 -2.6073 -7.4638 2.5757 18 6 -1.7942 -8.5271 2.0736 19 6 -0.3249 -8.0901 2.0907 20 7 -0.2160 -6.7984 1.3927 21 6 0.7091 -6.6075 0.4011 22 1 0.4924 -5.9379 -0.4180 23 6 1.9254 -7.2748 0.4490 24 7 2.2797 -7.9199 1.5401 25 14 3.0594 -7.2572 -1.0353 26 1 3.9768 -6.0931 -0.9436 27 1 3.8532 -8.5117 -1.0668 28 1 2.2495 -7.1525 -2.2758 29 6 2.2828 -1.0988 -0.0048 30 1 -0.3634 -0.0988 -1.0230 31 1 -0.3634 -0.8364 0.5970 32 1 -0.3633 0.9353 0.4258 33 1 5.6851 -1.1447 0.0018 34 1 5.2623 -3.5561 0.0004 35 1 2.9653 -4.4254 -0.0023 36 1 1.0125 -4.4359 1.3798 37 1 -1.2790 -4.9129 -0.2006 38 1 -1.7160 -3.7670 1.0895 39 1 -3.2397 -5.5296 2.2130 40 1 -2.8634 -6.4967 0.7663 41 1 -1.9190 -9.4089 2.7019 42 1 -2.0922 -8.7620 1.0518 43 1 0.0135 -7.9802 3.1210 44 1 0.2857 -8.8353 1.5808 45 1 3.1298 -8.3859 1.5737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051270330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:12 Heat of formation + Delta-G solvation = 52.306528 kcal Electronic energy + Delta-G solvation = -31446.764025 eV Core-core repulsion = 27273.956561 eV Total energy + Delta-G solvation = -4172.807464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -43.26339 -40.95224 -39.91931 -38.40073 -36.98799 -35.64464 -35.25804 -33.42505 -32.36355 -31.65115 -31.38350 -28.99468 -28.53245 -27.15820 -25.37845 -25.22071 -23.82598 -23.64058 -22.85404 -21.44363 -21.01519 -19.34134 -18.71849 -18.25706 -17.67201 -17.57957 -17.24557 -17.13873 -16.60582 -16.42266 -16.25567 -15.95541 -15.71545 -15.42690 -15.15266 -15.03435 -14.67501 -14.48195 -14.34881 -13.91711 -13.60862 -13.56911 -13.25465 -13.16884 -13.03268 -12.82210 -12.78870 -12.52569 -12.44125 -12.26422 -12.12750 -11.98466 -11.83948 -11.74164 -11.28668 -11.04103 -10.62235 -10.52222 -10.07060 -9.93406 -9.40084 -8.58419 -7.82865 -5.35123 -0.84395 0.10594 0.84182 1.02083 1.42800 1.53355 1.57824 1.68642 2.17259 2.47662 2.50553 2.92815 3.04767 3.32897 3.40613 3.44268 3.52013 3.67035 3.82925 4.02589 4.08749 4.21899 4.26007 4.29057 4.35164 4.48563 4.53030 4.57966 4.62798 4.65393 4.67142 4.69801 4.76770 4.80416 5.01731 5.11189 5.12951 5.20652 5.31477 5.40859 5.47395 5.55782 5.64503 5.72139 6.31765 6.39925 6.56599 6.78657 7.12759 7.15299 7.79163 8.36991 9.21734 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.004239 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.382230 B = 6604.047387 C = 8311.125058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.385 5.385 3 N -0.027 5.027 4 N -0.230 5.230 5 C -0.042 4.042 6 C -0.002 4.002 7 C -0.133 4.133 8 C -0.029 4.029 9 C -0.148 4.148 10 C 0.554 3.446 11 O -0.573 6.573 12 N -0.682 5.682 13 C 0.141 3.859 14 C 0.125 3.875 15 H 0.036 0.964 16 C 0.057 3.943 17 O -0.398 6.398 18 C 0.045 3.955 19 C 0.150 3.850 20 N -0.605 5.605 21 C -0.247 4.247 22 H 0.068 0.932 23 C -0.025 4.025 24 N -0.923 5.923 25 Si 0.925 3.075 26 H -0.248 1.248 27 H -0.301 1.301 28 H -0.289 1.289 29 C 0.111 3.889 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.140 0.860 36 H 0.413 0.587 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.007 0.993 44 H 0.065 0.935 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 8.166 -0.161 8.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.179 5.179 3 N -0.007 5.007 4 N -0.108 5.108 5 C -0.167 4.167 6 C -0.024 4.024 7 C -0.154 4.154 8 C -0.051 4.051 9 C -0.155 4.155 10 C 0.341 3.659 11 O -0.455 6.455 12 N -0.331 5.331 13 C 0.018 3.982 14 C 0.019 3.981 15 H 0.054 0.946 16 C -0.022 4.022 17 O -0.317 6.317 18 C -0.032 4.032 19 C 0.025 3.975 20 N -0.331 5.331 21 C -0.377 4.377 22 H 0.086 0.914 23 C -0.223 4.223 24 N -0.568 5.568 25 Si 0.754 3.246 26 H -0.173 1.173 27 H -0.228 1.228 28 H -0.215 1.215 29 C -0.013 4.013 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.194 0.806 34 H 0.190 0.810 35 H 0.157 0.843 36 H 0.251 0.749 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.083 0.917 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.780 9.976 -0.442 10.143 hybrid contribution 0.895 -1.764 -0.754 2.116 sum -0.886 8.212 -1.196 8.346 Atomic orbital electron populations 1.22300 0.70755 1.05341 1.05014 1.50224 1.08956 1.02753 1.55940 1.81517 0.94273 1.08155 1.16729 1.74770 1.11640 1.10756 1.13674 1.20266 0.93603 0.90231 1.12584 1.20977 0.98413 0.90681 0.92296 1.21282 0.96975 0.95290 1.01866 1.21777 0.92234 0.99977 0.91143 1.18834 0.94644 0.89398 1.12645 1.18125 0.87222 0.80186 0.80363 1.90719 1.51510 1.60943 1.42348 1.46019 1.13518 1.31822 1.41753 1.21202 0.82796 0.94891 0.99360 1.21554 0.91955 0.88742 0.95854 0.94612 1.22994 0.96045 0.87399 0.95716 1.87812 1.67455 1.23387 1.53044 1.23217 0.91685 0.89745 0.98590 1.21223 0.92899 0.88607 0.94788 1.44285 1.39170 1.07667 1.41938 1.19249 0.93120 1.25662 0.99628 0.91409 1.25589 0.97767 1.01057 0.97836 1.70088 1.22283 1.37585 1.26877 0.85976 0.80175 0.78122 0.80332 1.17325 1.22777 1.21533 1.19161 0.91678 0.89311 1.01123 0.89534 0.89419 0.86651 0.80588 0.81044 0.84265 0.74930 0.92565 0.89558 0.86492 0.93214 0.87986 0.93863 0.97526 0.91694 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.57 9.73 127.77 1.24 3.81 16 2 N -0.38 -11.58 4.10 -360.44 -1.48 -13.06 16 3 N -0.03 -0.84 13.72 37.02 0.51 -0.33 16 4 N -0.23 -7.17 12.40 -52.19 -0.65 -7.82 16 5 C -0.04 -1.24 7.26 39.59 0.29 -0.95 16 6 C 0.00 -0.04 10.09 22.58 0.23 0.19 16 7 C -0.13 -3.06 9.98 22.18 0.22 -2.84 16 8 C -0.03 -0.85 9.38 22.57 0.21 -0.64 16 9 C -0.15 -4.70 5.73 -20.06 -0.11 -4.82 16 10 C 0.55 18.77 6.45 86.69 0.56 19.33 16 11 O -0.57 -20.80 13.65 -4.02 -0.05 -20.85 16 12 N -0.68 -22.90 3.73 -466.28 -1.74 -24.64 16 13 C 0.14 4.51 4.45 86.38 0.38 4.89 16 14 C 0.13 4.34 3.20 44.97 0.14 4.48 16 15 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 16 C 0.06 1.73 6.29 72.08 0.45 2.18 16 17 O -0.40 -13.79 10.74 -148.98 -1.60 -15.39 16 18 C 0.05 1.59 6.99 72.08 0.50 2.10 16 19 C 0.15 6.45 5.38 86.34 0.46 6.91 16 20 N -0.60 -25.59 3.03 -673.54 -2.04 -27.63 16 21 C -0.25 -11.14 7.04 84.03 0.59 -10.55 16 22 H 0.07 3.11 5.84 -2.91 -0.02 3.10 16 23 C -0.03 -1.19 5.06 84.86 0.43 -0.76 16 24 N -0.92 -46.76 11.19 21.65 0.24 -46.52 16 25 Si 0.93 38.06 28.49 68.60 1.95 40.02 16 26 H -0.25 -8.96 6.51 99.48 0.65 -8.31 16 27 H -0.30 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 29 C 0.11 3.51 6.80 39.41 0.27 3.78 16 30 H 0.09 2.15 7.76 -2.38 -0.02 2.13 16 31 H 0.09 2.25 6.11 -2.39 -0.01 2.23 16 32 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.17 2.95 8.06 -2.92 -0.02 2.92 16 35 H 0.14 4.50 6.23 -2.91 -0.02 4.48 16 36 H 0.41 14.87 7.00 -92.71 -0.65 14.22 16 37 H 0.06 1.98 7.55 -2.39 -0.02 1.96 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.06 3.12 6.38 -2.39 -0.02 3.11 16 45 H 0.25 12.58 8.31 -92.71 -0.77 11.81 16 Total: -1.00 -59.41 362.03 1.36 -58.06 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.34 Total: 31.06 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 5.87 Total: 27.11 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -5.15 Total: -120.00 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.66 Total: -36.24 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.95 Total: 40.02 kcal Total: -59.41 1.36 -58.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051270330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.364 kcal (2) G-P(sol) polarization free energy of solvation -59.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds