Wall clock time and date at job start Wed Apr 1 2020 03:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39446 * 2 1 4 4 N 1.30499 * 108.69457 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.26095 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.99126 * 180.26420 * 5 4 3 7 7 H 1.09000 * 110.30850 * 332.51561 * 6 5 4 8 8 C 1.54387 * 110.34349 * 210.22464 * 6 5 4 9 9 N 1.48148 * 104.62008 * 217.26416 * 8 6 5 10 10 C 1.34778 * 127.83555 * 219.58459 * 9 8 6 11 11 O 1.21273 * 120.00118 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99436 * 179.97438 * 10 9 8 13 13 C 1.50707 * 109.46823 * 180.02562 * 12 10 9 14 14 C 1.41376 * 128.00522 * 90.00262 * 13 12 10 15 15 N 1.30178 * 106.39701 * 179.97438 * 14 13 12 16 16 O 1.20921 * 111.59875 * 359.97438 * 15 14 13 17 17 C 1.34036 * 111.57087 * 359.76411 * 16 15 14 18 18 C 1.48148 * 104.32120 * 39.58690 * 9 8 6 19 19 C 1.54280 * 110.34131 * 94.69170 * 6 5 4 20 20 H 1.09001 * 110.34723 * 359.88727 * 19 6 5 21 21 N 1.46503 * 110.34257 * 237.74253 * 19 6 5 22 22 C 1.36933 * 120.00384 * 154.99937 * 21 19 6 23 23 H 1.07999 * 120.00240 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00091 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00238 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99750 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47622 * 59.99864 * 26 24 22 28 28 H 1.48509 * 109.46848 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47122 * 299.99630 * 26 24 22 30 30 C 1.34675 * 108.01655 * 0.02562 * 5 4 3 31 31 H 1.09006 * 109.46843 * 270.00040 * 1 2 3 32 32 H 1.09001 * 109.46928 * 29.99320 * 1 2 3 33 33 H 1.08996 * 109.47351 * 149.99542 * 1 2 3 34 34 H 1.08000 * 125.65569 * 359.97438 * 3 2 1 35 35 H 1.09007 * 110.40926 * 336.05045 * 8 6 5 36 36 H 1.09001 * 110.41091 * 98.47842 * 8 6 5 37 37 H 1.08997 * 109.47668 * 300.00334 * 12 10 9 38 38 H 1.09005 * 109.46928 * 60.00274 * 12 10 9 39 39 H 1.08004 * 126.80179 * 359.94400 * 14 13 12 40 40 H 1.08000 * 126.77979 * 180.28723 * 17 16 15 41 41 H 1.09001 * 110.40245 * 201.62924 * 18 9 8 42 42 H 1.08993 * 110.50447 * 79.25131 * 18 9 8 43 43 H 0.97004 * 120.00134 * 334.99278 * 21 19 6 44 44 H 0.96992 * 120.00018 * 179.97438 * 25 24 22 45 45 H 1.07999 * 126.58816 * 179.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 4.7890 -1.5025 0.0033 7 1 5.6159 -0.9680 -0.4644 8 6 4.5277 -2.8371 -0.7277 9 7 5.2893 -3.8436 0.0480 10 6 6.0035 -4.8843 -0.4247 11 8 6.0731 -5.0791 -1.6196 12 6 6.7156 -5.8057 0.5319 13 6 7.4353 -6.8778 -0.2453 14 6 8.7571 -6.8510 -0.7463 15 7 8.9453 -7.9901 -1.3475 16 8 7.9620 -8.6916 -1.2902 17 6 6.9678 -8.0926 -0.6199 18 6 5.0876 -3.4467 1.4610 19 6 5.1582 -1.9045 1.4463 20 1 4.4416 -1.4841 2.1519 21 7 6.5141 -1.4537 1.7696 22 6 6.8687 -1.2297 3.0731 23 1 6.1489 -1.3859 3.8630 24 6 8.1536 -0.8030 3.3794 25 7 9.0313 -0.6142 2.4169 26 14 8.6375 -0.4982 5.1577 27 1 8.4815 -1.7536 5.9354 28 1 10.0527 -0.0518 5.2161 29 1 7.7629 0.5538 5.7353 30 6 2.2772 -1.1018 -0.0021 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3634 -0.8899 -0.5139 34 1 1.9335 2.1145 -0.0004 35 1 3.4639 -3.0744 -0.7170 36 1 4.8967 -2.7880 -1.7521 37 1 7.4369 -5.2353 1.1169 38 1 5.9890 -6.2671 1.2007 39 1 9.4693 -6.0449 -0.6497 40 1 5.9869 -8.4977 -0.4197 41 1 5.8791 -3.8575 2.0878 42 1 4.1120 -3.7792 1.8154 43 1 7.1608 -1.3138 1.0602 44 1 9.9290 -0.3157 2.6309 45 1 1.9612 -2.1345 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070526184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:42 Heat of formation + Delta-G solvation = 99.499223 kcal Electronic energy + Delta-G solvation = -30018.146633 eV Core-core repulsion = 25847.385598 eV Total energy + Delta-G solvation = -4170.761035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.89963 -42.97033 -40.93352 -38.87685 -35.74009 -35.50892 -34.99128 -33.37487 -33.02058 -32.26325 -30.13102 -29.20237 -28.75902 -27.37882 -25.92866 -24.69242 -23.87897 -22.62620 -22.10934 -21.96412 -20.61587 -20.16444 -19.06740 -18.76818 -18.58496 -18.01069 -17.88503 -16.92581 -16.62903 -16.44169 -16.33539 -15.74965 -15.55064 -15.35290 -15.09164 -14.86060 -14.75202 -14.29138 -14.17370 -13.91201 -13.71267 -13.45327 -13.31292 -13.22907 -13.19623 -12.96057 -12.76329 -12.46418 -12.33955 -12.18288 -12.14207 -11.91817 -11.66132 -11.35356 -11.05161 -10.90853 -10.74075 -10.37788 -10.31022 -9.75243 -9.27812 -8.84401 -7.88110 -5.16869 0.61604 1.20268 1.22418 1.50172 1.53044 1.58684 1.64990 2.07250 2.10835 2.23793 2.45233 2.60418 3.34919 3.43240 3.54109 3.62555 3.80634 3.86624 3.95372 4.05179 4.09857 4.12471 4.15723 4.23932 4.38318 4.42298 4.54899 4.55460 4.59183 4.66695 4.74488 4.79095 4.81539 4.82669 4.89091 4.96761 5.09870 5.15655 5.25851 5.39425 5.45501 5.59260 5.88191 6.31412 6.42732 6.62877 7.18224 7.31008 7.31994 7.38048 8.12530 8.36067 9.35161 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.006853 B = 0.003968 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4084.680454 B = 7054.682308 C =10501.876570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.176 3.824 4 N -0.544 5.544 5 C -0.008 4.008 6 C -0.019 4.019 7 H 0.049 0.951 8 C 0.126 3.874 9 N -0.612 5.612 10 C 0.535 3.465 11 O -0.586 6.586 12 C -0.051 4.051 13 C -0.198 4.198 14 C -0.015 4.015 15 N -0.397 5.397 16 O 0.092 5.908 17 C -0.029 4.029 18 C 0.085 3.915 19 C 0.177 3.823 20 H 0.062 0.938 21 N -0.725 5.725 22 C -0.232 4.232 23 H 0.082 0.918 24 C -0.073 4.073 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.271 1.271 28 H -0.304 1.304 29 H -0.283 1.283 30 C -0.041 4.041 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.232 0.768 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.187 0.813 40 H 0.262 0.738 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.368 0.632 44 H 0.247 0.753 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.267 -8.924 -2.606 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.107 4.107 4 N -0.263 5.263 5 C -0.137 4.137 6 C -0.040 4.040 7 H 0.068 0.932 8 C 0.002 3.998 9 N -0.344 5.344 10 C 0.325 3.675 11 O -0.467 6.467 12 C -0.091 4.091 13 C -0.202 4.202 14 C -0.193 4.193 15 N -0.102 5.102 16 O 0.028 5.972 17 C -0.110 4.110 18 C -0.040 4.040 19 C 0.066 3.934 20 H 0.080 0.920 21 N -0.364 5.364 22 C -0.364 4.364 23 H 0.100 0.900 24 C -0.265 4.265 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.196 1.196 28 H -0.230 1.230 29 H -0.209 1.209 30 C -0.175 4.175 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.248 0.752 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.163 0.837 39 H 0.204 0.796 40 H 0.278 0.722 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.199 0.801 44 H 0.056 0.944 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -20.646 -9.132 -3.728 22.882 hybrid contribution 0.272 1.178 0.918 1.518 sum -20.375 -7.954 -2.810 22.052 Atomic orbital electron populations 1.22376 0.73581 1.06439 1.04886 1.45658 1.09247 1.05897 1.53398 1.25506 0.84704 0.95239 1.05226 1.70113 1.22122 1.13038 1.20996 1.20239 0.93849 0.90223 1.09426 1.20417 0.93510 0.93384 0.96710 0.93231 1.22286 0.97146 0.85301 0.95034 1.48914 1.49257 1.26739 1.09514 1.20534 0.77530 0.80568 0.88848 1.90674 1.63795 1.74051 1.18158 1.19852 1.00112 0.93083 0.96049 1.20945 0.94780 0.97724 1.06759 1.25223 0.98397 0.96928 0.98732 1.73828 1.09007 1.06055 1.21322 1.84735 1.16989 1.39150 1.56303 1.26518 0.96468 0.92941 0.95101 1.23426 1.02861 0.96611 0.81120 1.21304 0.86678 0.92225 0.93164 0.92015 1.42638 1.09125 1.79695 1.04939 1.19579 0.95422 1.35794 0.85560 0.89995 1.25492 0.96924 1.03353 1.00773 1.69834 1.04971 1.54824 1.32561 0.85304 0.76137 0.78265 0.80598 1.19629 1.23043 1.20927 1.22694 0.89657 0.94000 1.11144 0.89405 0.87621 0.87965 0.75180 0.87661 0.92013 0.87676 0.83688 0.79584 0.72246 0.90024 0.87601 0.80093 0.94381 0.77818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.18 127.77 1.43 1.84 16 2 N -0.46 -8.07 3.15 -552.52 -1.74 -9.81 16 3 C 0.18 4.14 12.56 180.26 2.26 6.40 16 4 N -0.54 -18.88 11.25 -188.31 -2.12 -21.00 16 5 C -0.01 -0.26 5.90 41.39 0.24 -0.02 16 6 C -0.02 -0.64 3.35 -10.64 -0.04 -0.68 16 7 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 8 C 0.13 3.55 6.53 86.53 0.56 4.11 16 9 N -0.61 -17.70 3.32 -807.95 -2.68 -20.37 16 10 C 0.53 16.46 7.91 87.66 0.69 17.15 16 11 O -0.59 -22.35 16.30 -3.01 -0.05 -22.40 16 12 C -0.05 -1.22 5.26 29.10 0.15 -1.07 16 13 C -0.20 -5.04 4.82 -19.74 -0.10 -5.14 16 14 C -0.01 -0.44 12.16 85.71 1.04 0.60 16 15 N -0.40 -12.26 12.07 -59.27 -0.72 -12.97 16 16 O 0.09 2.36 11.20 71.67 0.80 3.16 16 17 C -0.03 -0.58 12.26 67.17 0.82 0.25 16 18 C 0.08 2.34 6.63 86.53 0.57 2.92 16 19 C 0.18 6.44 3.36 45.90 0.15 6.59 16 20 H 0.06 2.32 7.65 -2.39 -0.02 2.30 16 21 N -0.73 -35.35 5.11 -318.65 -1.63 -36.98 16 22 C -0.23 -12.26 9.96 84.04 0.84 -11.42 16 23 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 25 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 26 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 28 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 29 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 30 C -0.04 -0.87 10.57 83.09 0.88 0.01 16 31 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.23 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.11 2.17 6.03 -2.38 -0.01 2.16 16 36 H 0.06 1.98 7.88 -2.39 -0.02 1.96 16 37 H 0.11 2.80 7.95 -2.39 -0.02 2.78 16 38 H 0.15 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.19 5.42 8.06 -2.91 -0.02 5.40 16 40 H 0.26 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.08 2.45 7.22 -2.39 -0.02 2.43 16 42 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.37 20.39 7.56 -92.71 -0.70 19.68 16 44 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.21 2.77 6.92 -2.91 -0.02 2.75 16 Total: -1.00 -85.80 384.17 4.51 -81.30 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.33 Total: 33.31 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 9.99 Total: 17.87 kcal Atomic # 7 Polarization: -152.04 SS G_CDS: -8.60 Total: -160.64 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.75 Total: -19.24 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -85.80 4.51 -81.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070526184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.796 kcal (2) G-P(sol) polarization free energy of solvation -85.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds