Wall clock time and date at job start Wed Apr 1 2020 03:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35047 * 126.39459 * 2 1 4 4 N 1.30499 * 108.69808 * 180.27012 * 3 2 1 5 5 C 1.34123 * 109.25850 * 359.76921 * 4 3 2 6 6 C 1.34671 * 108.02062 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.59389 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.30647 * 204.32578 * 7 6 5 9 9 C 1.54395 * 110.43104 * 82.08766 * 7 6 5 10 10 N 1.48145 * 104.61454 * 217.21839 * 9 7 6 11 11 C 1.34784 * 127.83336 * 219.58574 * 10 9 7 12 12 O 1.21278 * 120.00254 * 359.97385 * 11 10 9 13 13 C 1.50702 * 119.99513 * 179.97438 * 11 10 9 14 14 C 1.50697 * 109.46725 * 180.02562 * 13 11 10 15 15 C 1.41387 * 126.80228 * 125.00029 * 14 13 11 16 16 C 1.35452 * 103.98439 * 179.97438 * 15 14 13 17 17 O 1.34046 * 106.44688 * 359.97438 * 16 15 14 18 18 N 1.20920 * 111.56633 * 359.70911 * 17 16 15 19 19 C 1.48140 * 104.32775 * 39.58831 * 10 9 7 20 20 C 1.54281 * 110.34250 * 326.50219 * 7 6 5 21 21 H 1.09003 * 110.34267 * 0.10000 * 20 7 6 22 22 N 1.46502 * 110.34192 * 237.84810 * 20 7 6 23 23 C 1.36941 * 120.00222 * 154.99895 * 22 20 7 24 24 H 1.08002 * 119.99789 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99924 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00092 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99598 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47322 * 359.97438 * 27 25 23 29 29 H 1.48507 * 109.47057 * 119.99842 * 27 25 23 30 30 H 1.48501 * 109.46919 * 239.99460 * 27 25 23 31 31 H 1.09012 * 109.47436 * 270.11576 * 1 2 3 32 32 H 1.09002 * 109.47717 * 30.11801 * 1 2 3 33 33 H 1.08999 * 109.47547 * 150.11982 * 1 2 3 34 34 H 1.08005 * 125.64826 * 0.02562 * 3 2 1 35 35 H 1.07997 * 125.98901 * 180.02562 * 5 4 3 36 36 H 1.08990 * 110.40604 * 336.00463 * 9 7 6 37 37 H 1.09000 * 110.40401 * 98.43886 * 9 7 6 38 38 H 1.08997 * 109.46814 * 300.00002 * 13 11 10 39 39 H 1.08995 * 109.47513 * 59.99724 * 13 11 10 40 40 H 1.07999 * 128.00538 * 359.96140 * 15 14 13 41 41 H 1.08002 * 126.77554 * 179.97438 * 16 15 14 42 42 H 1.08998 * 110.41105 * 201.63246 * 19 10 9 43 43 H 1.08999 * 110.51120 * 79.24314 * 19 10 9 44 44 H 0.97002 * 120.00013 * 334.99814 * 22 20 7 45 45 H 0.97007 * 119.99869 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6904 -0.0058 5 6 3.5460 -0.6503 -0.0046 6 6 2.2772 -1.1017 0.0028 7 6 1.8364 -2.5428 0.0062 8 1 0.8326 -2.6322 -0.4092 9 6 1.8772 -3.1155 1.4394 10 7 2.3400 -4.5126 1.2705 11 6 1.9105 -5.6105 1.9240 12 8 1.0423 -5.5146 2.7653 13 6 2.5093 -6.9571 1.6091 14 6 1.8598 -8.0094 2.4704 15 6 1.2215 -9.1907 2.0276 16 6 0.8107 -9.7891 3.1713 17 8 1.1971 -8.9915 4.1769 18 7 1.7815 -8.0143 3.7698 19 6 3.3819 -4.4294 0.2208 20 6 2.8285 -3.4090 -0.7972 21 1 3.6357 -2.7925 -1.1929 22 7 2.1344 -4.1012 -1.8860 23 6 2.8275 -4.4927 -3.0003 24 1 3.8858 -4.2909 -3.0766 25 6 2.1697 -5.1480 -4.0321 26 7 0.8800 -5.3935 -3.9393 27 14 3.1151 -5.6814 -5.5525 28 1 4.5405 -5.2899 -5.4117 29 1 3.0188 -7.1557 -5.7033 30 1 2.5372 -5.0224 -6.7512 31 1 -0.3634 0.0021 1.0278 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3634 -0.8910 -0.5120 34 1 1.9332 2.1145 0.0004 35 1 4.4368 -1.2609 -0.0081 36 1 2.5809 -2.5535 2.0533 37 1 0.8826 -3.0958 1.8850 38 1 2.3405 -7.1930 0.5584 39 1 3.5806 -6.9341 1.8086 40 1 1.0914 -9.5359 1.0126 41 1 0.2771 -10.7242 3.2562 42 1 3.5226 -5.4008 -0.2531 43 1 4.3218 -4.0735 0.6428 44 1 1.1839 -4.2821 -1.8177 45 1 0.4204 -5.8518 -4.6603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070630228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:24 Heat of formation + Delta-G solvation = 120.510914 kcal Electronic energy + Delta-G solvation = -30341.226147 eV Core-core repulsion = 26171.376248 eV Total energy + Delta-G solvation = -4169.849900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.85552 -42.01471 -39.70136 -37.57072 -34.53271 -34.02366 -33.92255 -32.33203 -31.66337 -30.74297 -29.54752 -27.57649 -27.46018 -26.89844 -24.36459 -23.27912 -23.02542 -21.62589 -21.37884 -20.49488 -19.36307 -18.95375 -17.67651 -17.63361 -17.40703 -16.74875 -16.65914 -15.72158 -15.69616 -15.41926 -14.91426 -14.72778 -14.27726 -13.89035 -13.65368 -13.48956 -13.43472 -13.26228 -13.07358 -12.89084 -12.83568 -12.72070 -12.26460 -12.21486 -11.97030 -11.64844 -11.22956 -11.18478 -10.93382 -10.87723 -10.74621 -10.17949 -10.12899 -9.87253 -9.76812 -9.62404 -9.53628 -9.43404 -9.18962 -8.50015 -8.13722 -7.13213 -5.92737 -3.23592 1.58814 2.15103 2.26331 2.84199 2.89396 3.19328 3.33334 3.33540 3.35317 3.40905 3.42200 4.17606 4.43037 4.52690 4.69451 4.73117 4.79572 4.82452 5.00139 5.06832 5.12151 5.19205 5.30401 5.33801 5.34220 5.42449 5.46143 5.52905 5.53903 5.58342 5.73330 5.78606 5.83506 5.88034 6.03997 6.07828 6.15342 6.27128 6.37204 6.55395 6.70125 6.91310 7.30952 7.57326 7.79481 8.21612 8.24191 8.36701 8.38302 9.36467 9.89121 10.23854 11.29082 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007087 B = 0.004134 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3950.081911 B = 6772.011683 C = 9853.339872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.458 5.458 3 C 0.170 3.830 4 N -0.494 5.494 5 C -0.023 4.023 6 C 0.004 3.996 7 C -0.038 4.038 8 H 0.089 0.911 9 C 0.122 3.878 10 N -0.613 5.613 11 C 0.542 3.458 12 O -0.541 6.541 13 C -0.059 4.059 14 C 0.030 3.970 15 C -0.223 4.223 16 C -0.070 4.070 17 O 0.100 5.900 18 N -0.341 5.341 19 C 0.069 3.931 20 C 0.179 3.821 21 H 0.079 0.921 22 N -0.713 5.713 23 C -0.246 4.246 24 H 0.075 0.925 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.168 0.832 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.173 0.827 41 H 0.215 0.785 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 0.617 10.951 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.111 4.111 4 N -0.212 5.212 5 C -0.171 4.171 6 C -0.111 4.111 7 C -0.060 4.060 8 H 0.108 0.892 9 C -0.002 4.002 10 N -0.347 5.347 11 C 0.330 3.670 12 O -0.419 6.419 13 C -0.099 4.099 14 C -0.130 4.130 15 C -0.245 4.245 16 C -0.151 4.151 17 O 0.031 5.969 18 N -0.042 5.042 19 C -0.057 4.057 20 C 0.066 3.934 21 H 0.097 0.903 22 N -0.353 5.353 23 C -0.377 4.377 24 H 0.093 0.907 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.218 0.782 35 H 0.186 0.814 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.191 0.809 41 H 0.231 0.769 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.210 1.903 12.241 12.390 hybrid contribution -0.953 -1.288 -1.919 2.500 sum -0.743 0.615 10.322 10.367 Atomic orbital electron populations 1.22051 0.76850 1.04979 1.03410 1.45257 1.07520 1.06759 1.54551 1.24815 0.85785 0.93241 1.07288 1.70241 1.19354 1.12111 1.19487 1.21988 0.95776 0.90830 1.08492 1.20990 0.91116 0.88877 1.10159 1.20872 1.01685 0.87450 0.96002 0.89233 1.22225 1.00695 0.81642 0.95610 1.48803 1.39766 1.06416 1.39714 1.19803 0.82292 0.84416 0.80494 1.90711 1.31819 1.85997 1.33349 1.19962 1.00715 0.88911 1.00360 1.22929 1.02332 0.97238 0.90484 1.22770 1.04333 0.96071 1.01312 1.25951 1.03173 0.99243 0.86756 1.84850 1.53357 1.24269 1.34415 1.73865 1.12542 1.03843 1.13990 1.23653 0.89850 1.03576 0.88606 1.21185 0.93565 0.90797 0.87858 0.90331 1.42474 1.09057 1.67721 1.16075 1.19288 0.93113 1.30792 0.94528 0.90730 1.24744 0.95747 1.01201 0.98660 1.69671 1.07809 1.46666 1.33532 0.86149 0.79022 0.78007 0.83183 1.20335 1.21795 1.21845 0.90621 0.89513 0.89283 0.78246 0.81428 0.91006 0.90497 0.85860 0.87189 0.80928 0.76882 0.89115 0.91714 0.78146 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 11.00 59.84 0.66 1.30 16 2 N -0.46 -5.85 3.15 -121.36 -0.38 -6.23 16 3 C 0.17 2.18 12.56 -90.37 -1.14 1.04 16 4 N -0.49 -7.75 11.25 -14.66 -0.16 -7.91 16 5 C -0.02 -0.36 10.67 -17.81 -0.19 -0.55 16 6 C 0.00 0.06 5.79 -81.60 -0.47 -0.42 16 7 C -0.04 -0.58 3.11 -90.37 -0.28 -0.87 16 8 H 0.09 1.47 6.66 -51.93 -0.35 1.13 16 9 C 0.12 1.80 6.59 -2.41 -0.02 1.79 16 10 N -0.61 -9.68 3.32 -169.31 -0.56 -10.24 16 11 C 0.54 9.34 7.91 -10.98 -0.09 9.25 16 12 O -0.54 -11.17 15.87 5.56 0.09 -11.08 16 13 C -0.06 -0.85 5.28 -29.04 -0.15 -1.00 16 14 C 0.03 0.44 6.09 -82.10 -0.50 -0.06 16 15 C -0.22 -2.68 11.12 -39.38 -0.44 -3.11 16 16 C -0.07 -0.71 12.30 29.74 0.37 -0.34 16 17 O 0.10 1.36 11.20 17.16 0.19 1.55 16 18 N -0.34 -5.55 11.48 33.42 0.38 -5.16 16 19 C 0.07 1.04 6.63 -2.41 -0.02 1.02 16 20 C 0.18 3.07 3.20 -66.53 -0.21 2.85 16 21 H 0.08 1.38 6.38 -51.93 -0.33 1.04 16 22 N -0.71 -15.74 5.11 -52.07 -0.27 -16.00 16 23 C -0.25 -6.13 9.96 -15.06 -0.15 -6.28 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 27 Si 0.91 20.95 29.55 -169.99 -5.02 15.92 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.90 7.14 -51.93 -0.37 0.53 16 34 H 0.20 1.73 8.06 -52.48 -0.42 1.30 16 35 H 0.17 2.34 7.50 -52.49 -0.39 1.95 16 36 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 37 H 0.08 1.18 7.88 -51.93 -0.41 0.78 16 38 H 0.12 1.68 7.95 -51.93 -0.41 1.27 16 39 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.09 1.44 7.22 -51.93 -0.37 1.06 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.38 9.32 7.55 -40.82 -0.31 9.01 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -34.98 382.03 -7.84 -42.82 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.86 Total: 11.62 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.72 Total: 4.36 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.27 Total: -70.95 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.28 Total: -9.53 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.98 -7.84 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070630228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.327 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds