Wall clock time and date at job start Wed Apr 1 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35047 * 126.39459 * 2 1 4 4 N 1.30499 * 108.69808 * 180.27012 * 3 2 1 5 5 C 1.34123 * 109.25850 * 359.76921 * 4 3 2 6 6 C 1.34671 * 108.02062 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.59389 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.30647 * 204.32578 * 7 6 5 9 9 C 1.54395 * 110.43104 * 82.08766 * 7 6 5 10 10 N 1.48145 * 104.61454 * 217.21839 * 9 7 6 11 11 C 1.34784 * 127.83336 * 219.58574 * 10 9 7 12 12 O 1.21278 * 120.00254 * 359.97385 * 11 10 9 13 13 C 1.50702 * 119.99513 * 179.97438 * 11 10 9 14 14 C 1.50697 * 109.46725 * 180.02562 * 13 11 10 15 15 C 1.41387 * 126.80228 * 125.00029 * 14 13 11 16 16 C 1.35452 * 103.98439 * 179.97438 * 15 14 13 17 17 O 1.34046 * 106.44688 * 359.97438 * 16 15 14 18 18 N 1.20920 * 111.56633 * 359.70911 * 17 16 15 19 19 C 1.48140 * 104.32775 * 39.58831 * 10 9 7 20 20 C 1.54281 * 110.34250 * 326.50219 * 7 6 5 21 21 H 1.09003 * 110.34267 * 0.10000 * 20 7 6 22 22 N 1.46502 * 110.34192 * 237.84810 * 20 7 6 23 23 C 1.36941 * 120.00222 * 154.99895 * 22 20 7 24 24 H 1.08002 * 119.99789 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99924 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00092 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99598 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47322 * 359.97438 * 27 25 23 29 29 H 1.48507 * 109.47057 * 119.99842 * 27 25 23 30 30 H 1.48501 * 109.46919 * 239.99460 * 27 25 23 31 31 H 1.09012 * 109.47436 * 270.11576 * 1 2 3 32 32 H 1.09002 * 109.47717 * 30.11801 * 1 2 3 33 33 H 1.08999 * 109.47547 * 150.11982 * 1 2 3 34 34 H 1.08005 * 125.64826 * 0.02562 * 3 2 1 35 35 H 1.07997 * 125.98901 * 180.02562 * 5 4 3 36 36 H 1.08990 * 110.40604 * 336.00463 * 9 7 6 37 37 H 1.09000 * 110.40401 * 98.43886 * 9 7 6 38 38 H 1.08997 * 109.46814 * 300.00002 * 13 11 10 39 39 H 1.08995 * 109.47513 * 59.99724 * 13 11 10 40 40 H 1.07999 * 128.00538 * 359.96140 * 15 14 13 41 41 H 1.08002 * 126.77554 * 179.97438 * 16 15 14 42 42 H 1.08998 * 110.41105 * 201.63246 * 19 10 9 43 43 H 1.08999 * 110.51120 * 79.24314 * 19 10 9 44 44 H 0.97002 * 120.00013 * 334.99814 * 22 20 7 45 45 H 0.97007 * 119.99869 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6904 -0.0058 5 6 3.5460 -0.6503 -0.0046 6 6 2.2772 -1.1017 0.0028 7 6 1.8364 -2.5428 0.0062 8 1 0.8326 -2.6322 -0.4092 9 6 1.8772 -3.1155 1.4394 10 7 2.3400 -4.5126 1.2705 11 6 1.9105 -5.6105 1.9240 12 8 1.0423 -5.5146 2.7653 13 6 2.5093 -6.9571 1.6091 14 6 1.8598 -8.0094 2.4704 15 6 1.2215 -9.1907 2.0276 16 6 0.8107 -9.7891 3.1713 17 8 1.1971 -8.9915 4.1769 18 7 1.7815 -8.0143 3.7698 19 6 3.3819 -4.4294 0.2208 20 6 2.8285 -3.4090 -0.7972 21 1 3.6357 -2.7925 -1.1929 22 7 2.1344 -4.1012 -1.8860 23 6 2.8275 -4.4927 -3.0003 24 1 3.8858 -4.2909 -3.0766 25 6 2.1697 -5.1480 -4.0321 26 7 0.8800 -5.3935 -3.9393 27 14 3.1151 -5.6814 -5.5525 28 1 4.5405 -5.2899 -5.4117 29 1 3.0188 -7.1557 -5.7033 30 1 2.5372 -5.0224 -6.7512 31 1 -0.3634 0.0021 1.0278 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3634 -0.8910 -0.5120 34 1 1.9332 2.1145 0.0004 35 1 4.4368 -1.2609 -0.0081 36 1 2.5809 -2.5535 2.0533 37 1 0.8826 -3.0958 1.8850 38 1 2.3405 -7.1930 0.5584 39 1 3.5806 -6.9341 1.8086 40 1 1.0914 -9.5359 1.0126 41 1 0.2771 -10.7242 3.2562 42 1 3.5226 -5.4008 -0.2531 43 1 4.3218 -4.0735 0.6428 44 1 1.1839 -4.2821 -1.8177 45 1 0.4204 -5.8518 -4.6603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070630228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:23 Heat of formation + Delta-G solvation = 98.029927 kcal Electronic energy + Delta-G solvation = -30342.200996 eV Core-core repulsion = 26171.376248 eV Total energy + Delta-G solvation = -4170.824748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.87595 -43.08031 -41.02687 -38.95507 -35.79099 -35.56284 -34.90866 -33.71858 -32.65102 -32.38781 -30.68368 -29.07530 -28.60918 -27.77628 -25.99918 -24.69518 -24.03278 -22.80572 -22.41529 -21.69210 -20.65143 -20.13927 -19.13824 -18.70629 -18.59870 -18.02864 -17.90852 -16.94342 -16.87930 -16.63224 -16.34543 -15.87376 -15.58743 -15.24500 -15.11477 -14.86349 -14.63031 -14.34192 -14.16534 -13.96169 -13.77607 -13.69475 -13.46649 -13.40031 -13.29140 -13.10983 -12.86486 -12.52658 -12.48753 -12.23886 -12.15216 -11.95003 -11.71305 -11.26976 -11.06220 -10.89509 -10.83841 -10.51310 -10.45318 -9.87532 -9.31232 -8.91917 -7.91953 -5.20800 0.68597 1.08680 1.24646 1.50106 1.53235 1.54516 1.61054 1.87542 2.02743 2.23996 2.52746 2.58210 3.14836 3.37508 3.41666 3.53279 3.69104 3.78394 3.89857 3.92034 3.98578 4.08032 4.19999 4.20353 4.33950 4.35956 4.40682 4.44073 4.50493 4.56688 4.61878 4.65742 4.70832 4.76262 4.86774 4.90830 4.98381 5.06503 5.16608 5.34158 5.46417 5.59452 5.80047 6.28226 6.35345 6.48527 7.05193 7.15558 7.36411 7.41339 8.06555 8.30719 9.31125 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007087 B = 0.004134 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3950.081911 B = 6772.011683 C = 9853.339872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.460 5.460 3 C 0.181 3.819 4 N -0.530 5.530 5 C -0.035 4.035 6 C -0.013 4.013 7 C -0.020 4.020 8 H 0.073 0.927 9 C 0.127 3.873 10 N -0.612 5.612 11 C 0.535 3.465 12 O -0.581 6.581 13 C -0.054 4.054 14 C 0.006 3.994 15 C -0.242 4.242 16 C -0.046 4.046 17 O 0.092 5.908 18 N -0.382 5.382 19 C 0.079 3.921 20 C 0.175 3.825 21 H 0.080 0.920 22 N -0.723 5.723 23 C -0.232 4.232 24 H 0.084 0.916 25 C -0.067 4.067 26 N -0.968 5.968 27 Si 0.962 3.038 28 H -0.264 1.264 29 H -0.295 1.295 30 H -0.302 1.302 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.173 0.827 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.191 0.809 41 H 0.266 0.734 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.371 0.629 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 0.833 11.286 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.142 5.142 3 C -0.101 4.101 4 N -0.249 5.249 5 C -0.183 4.183 6 C -0.128 4.128 7 C -0.042 4.042 8 H 0.092 0.908 9 C 0.004 3.996 10 N -0.345 5.345 11 C 0.325 3.675 12 O -0.461 6.461 13 C -0.094 4.094 14 C -0.152 4.152 15 C -0.263 4.263 16 C -0.127 4.127 17 O 0.024 5.976 18 N -0.085 5.085 19 C -0.046 4.046 20 C 0.064 3.936 21 H 0.098 0.902 22 N -0.362 5.362 23 C -0.364 4.364 24 H 0.101 0.899 25 C -0.259 4.259 26 N -0.618 5.618 27 Si 0.793 3.207 28 H -0.188 1.188 29 H -0.223 1.223 30 H -0.230 1.230 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.257 0.743 35 H 0.191 0.809 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.208 0.792 41 H 0.282 0.718 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.203 0.797 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.887 2.145 12.599 12.811 hybrid contribution -1.176 -1.270 -1.956 2.612 sum -0.290 0.875 10.643 10.683 Atomic orbital electron populations 1.22299 0.74862 1.05722 1.04817 1.45474 1.08791 1.06168 1.53748 1.25613 0.85074 0.94647 1.04727 1.70236 1.21121 1.12209 1.21308 1.22180 0.96229 0.91203 1.08678 1.20843 0.91494 0.88949 1.11560 1.20557 1.00142 0.87935 0.95546 0.90835 1.22227 1.00622 0.81342 0.95441 1.48873 1.39677 1.06595 1.39360 1.20335 0.81781 0.85476 0.79932 1.90682 1.33612 1.86645 1.35185 1.19975 1.01692 0.87231 1.00479 1.23252 1.03070 0.98359 0.90559 1.23098 1.04801 0.95520 1.02894 1.26878 1.01077 0.99532 0.85183 1.84789 1.53191 1.24225 1.35381 1.73855 1.14377 1.05405 1.14835 1.23529 0.90597 1.02625 0.87890 1.21354 0.93713 0.91169 0.87325 0.90191 1.42594 1.08519 1.68185 1.16856 1.19649 0.93470 1.28493 0.94743 0.89853 1.25400 0.96444 1.02693 1.01400 1.69813 1.09285 1.48639 1.34112 0.85234 0.78579 0.77047 0.79873 1.18769 1.22259 1.23032 0.88903 0.86620 0.90715 0.74327 0.80936 0.89714 0.91349 0.85421 0.85195 0.79156 0.71837 0.89616 0.88494 0.79721 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 11.00 127.77 1.41 2.47 16 2 N -0.46 -10.97 3.15 -537.88 -1.70 -12.66 16 3 C 0.18 4.21 12.56 180.26 2.26 6.48 16 4 N -0.53 -15.84 11.25 -200.31 -2.25 -18.09 16 5 C -0.04 -1.05 10.67 83.52 0.89 -0.16 16 6 C -0.01 -0.36 5.79 40.95 0.24 -0.12 16 7 C -0.02 -0.61 3.11 -10.63 -0.03 -0.64 16 8 H 0.07 2.47 6.66 -2.39 -0.02 2.46 16 9 C 0.13 3.71 6.59 86.54 0.57 4.28 16 10 N -0.61 -19.07 3.32 -807.96 -2.68 -21.75 16 11 C 0.54 18.54 7.91 87.66 0.69 19.24 16 12 O -0.58 -24.48 15.87 -3.02 -0.05 -24.53 16 13 C -0.05 -1.53 5.28 29.10 0.15 -1.37 16 14 C 0.01 0.18 6.09 43.58 0.27 0.45 16 15 C -0.24 -5.48 11.12 22.40 0.25 -5.23 16 16 C -0.05 -0.83 12.30 67.18 0.83 -0.01 16 17 O 0.09 2.43 11.20 71.58 0.80 3.23 16 18 N -0.38 -12.46 11.48 -49.55 -0.57 -13.03 16 19 C 0.08 2.26 6.63 86.54 0.57 2.84 16 20 C 0.18 5.90 3.20 45.90 0.15 6.04 16 21 H 0.08 2.71 6.38 -2.39 -0.02 2.70 16 22 N -0.72 -31.96 5.11 -318.64 -1.63 -33.59 16 23 C -0.23 -11.44 9.96 84.03 0.84 -10.60 16 24 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 25 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 26 N -0.97 -55.45 13.06 21.65 0.28 -55.16 16 27 Si 0.96 43.14 29.55 68.60 2.03 45.17 16 28 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 29 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 30 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 31 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.48 7.14 -2.39 -0.02 1.46 16 34 H 0.24 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.17 4.66 7.50 -2.91 -0.02 4.64 16 36 H 0.08 2.28 7.86 -2.39 -0.02 2.27 16 37 H 0.07 2.13 7.88 -2.39 -0.02 2.11 16 38 H 0.13 3.45 7.95 -2.39 -0.02 3.43 16 39 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.27 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.09 2.61 7.22 -2.39 -0.02 2.59 16 43 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.37 18.37 7.55 -92.71 -0.70 17.67 16 45 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 Total: -1.00 -77.74 382.03 4.12 -73.62 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.34 Total: 36.19 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 9.55 Total: 20.60 kcal Atomic # 7 Polarization: -145.74 SS G_CDS: -8.54 Total: -154.28 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.75 Total: -21.29 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -77.74 4.12 -73.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070630228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.653 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds