Wall clock time and date at job start Wed Apr 1 2020 03:00:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08999 * 109.47013 * 2 1
4 4 C 1.47202 * 109.47140 * 120.00298 * 2 1 3
5 5 N 2.60805 * 109.47206 * 120.00042 * 2 1 3
6 6 C 1.50698 * 109.47286 * 239.99948 * 2 1 3
7 7 O 1.21280 * 120.00026 * 335.43059 * 6 2 1
8 8 N 1.34774 * 120.00034 * 155.41681 * 6 2 1
9 9 C 1.46921 * 120.63334 * 355.37109 * 8 6 2
10 10 C 1.53200 * 108.77752 * 126.38424 * 9 8 6
11 11 C 1.53041 * 109.31034 * 54.63624 * 10 9 8
12 12 H 1.09000 * 109.45868 * 58.65341 * 11 10 9
13 13 C 1.50696 * 109.45846 * 178.61404 * 11 10 9
14 14 C 1.38251 * 119.97528 * 59.79583 * 13 11 10
15 15 C 1.38196 * 120.02584 * 179.72261 * 14 13 11
16 16 C 1.38459 * 119.97418 * 0.57133 * 15 14 13
17 17 F 1.35098 * 120.02691 * 179.67554 * 16 15 14
18 18 C 1.38465 * 119.94806 * 359.70485 * 16 15 14
19 19 C 1.38199 * 119.97371 * 359.97438 * 18 16 15
20 20 C 1.53047 * 109.53574 * 298.63475 * 11 10 9
21 21 H 1.08991 * 109.49627 * 301.41118 * 20 11 10
22 22 N 1.46503 * 109.49117 * 181.34997 * 20 11 10
23 23 C 1.36938 * 119.99674 * 155.06544 * 22 20 11
24 24 H 1.07996 * 120.00354 * 0.02562 * 23 22 20
25 25 C 1.38818 * 120.00037 * 179.97438 * 23 22 20
26 26 N 1.31611 * 119.99708 * 0.02562 * 25 23 22
27 27 Si 1.86795 * 119.99822 * 179.97438 * 25 23 22
28 28 H 1.48500 * 109.47136 * 90.00471 * 27 25 23
29 29 H 1.48507 * 109.46969 * 210.00097 * 27 25 23
30 30 H 1.48498 * 109.47424 * 330.00003 * 27 25 23
31 31 C 1.46934 * 120.62904 * 175.36253 * 8 6 2
32 32 H 1.09004 * 109.47461 * 304.99772 * 1 2 3
33 33 H 1.08997 * 109.47627 * 65.00029 * 1 2 3
34 34 H 1.09000 * 109.47145 * 184.99989 * 1 2 3
35 35 H 1.09005 * 109.58685 * 6.59835 * 9 8 6
36 36 H 1.09000 * 109.58988 * 246.17117 * 9 8 6
37 37 H 1.09005 * 109.49453 * 294.68845 * 10 9 8
38 38 H 1.09001 * 109.52353 * 174.60238 * 10 9 8
39 39 H 1.08007 * 119.98322 * 359.97438 * 14 13 11
40 40 H 1.07998 * 120.00924 * 180.25109 * 15 14 13
41 41 H 1.08000 * 120.01095 * 180.02562 * 18 16 15
42 42 H 1.08001 * 119.98750 * 180.02562 * 19 18 16
43 43 H 0.96998 * 120.00467 * 335.06604 * 22 20 11
44 44 H 0.97004 * 119.99801 * 179.97438 * 26 25 23
45 45 H 1.08994 * 109.58187 * 113.82813 * 31 8 6
46 46 H 1.09002 * 109.58772 * 353.40423 * 31 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0207 -0.6940 1.2019
5 7 2.3994 -1.2295 2.1294
6 6 2.0323 -0.7104 -1.2304
7 8 1.3339 -1.5337 -1.7830
8 7 3.2577 -0.4307 -1.7170
9 6 4.0746 0.6349 -1.1206
10 6 5.4444 0.0573 -0.7501
11 6 6.0686 -0.5968 -1.9848
12 1 6.1657 0.1441 -2.7783
13 6 7.4309 -1.1363 -1.6326
14 6 7.5604 -2.0919 -0.6419
15 6 8.8085 -2.5915 -0.3220
16 6 9.9309 -2.1261 -0.9858
17 9 11.1523 -2.6090 -0.6693
18 6 9.8006 -1.1648 -1.9738
19 6 8.5507 -0.6714 -2.2966
20 6 5.1746 -1.7429 -2.4640
21 1 5.0570 -2.4720 -1.6625
22 7 5.7890 -2.3889 -3.6265
23 6 5.4920 -3.6927 -3.9217
24 1 4.8046 -4.2446 -3.2978
25 6 6.0738 -4.3048 -5.0235
26 7 6.9111 -3.6321 -5.7841
27 14 5.6692 -6.0835 -5.4257
28 1 4.4937 -6.1311 -6.3318
29 1 6.8345 -6.7175 -6.0930
30 1 5.3578 -6.8160 -4.1720
31 6 3.8019 -1.1857 -2.8539
32 1 -0.3634 0.5894 0.8418
33 1 -0.3634 0.4343 -0.9313
34 1 -0.3633 -1.0238 0.0896
35 1 3.5833 1.0138 -0.2244
36 1 4.2018 1.4439 -1.8399
37 1 5.3241 -0.6889 0.0354
38 1 6.0934 0.8579 -0.3951
39 1 6.6852 -2.4511 -0.1207
40 1 8.9089 -3.3410 0.4491
41 1 10.6754 -0.8013 -2.4925
42 1 8.4488 0.0781 -3.0675
43 1 6.4061 -1.8932 -4.1871
44 1 7.3179 -4.0599 -6.5538
45 1 3.9067 -0.5251 -3.7146
46 1 3.1307 -2.0080 -3.1015
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001079149596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:49
Heat of formation + Delta-G solvation = -13.605243 kcal
Electronic energy + Delta-G solvation = -30648.152678 eV
Core-core repulsion = 26452.567104 eV
Total energy + Delta-G solvation = -4195.585574 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-48.60652 -40.58014 -39.23408 -37.36479 -36.75234 -34.67336 -33.30740 -33.06420
-31.30270 -30.84619 -29.61125 -28.33614 -25.93420 -24.57923 -23.96980 -22.97294
-22.29241 -21.46424 -20.47551 -19.41226 -17.77593 -17.60662 -17.39519 -17.15064
-16.04037 -15.87816 -15.37750 -15.30003 -15.19317 -14.59358 -14.39217 -14.17725
-14.11094 -13.81903 -13.58937 -13.45193 -13.21563 -13.04891 -12.95771 -12.80037
-12.69321 -12.50345 -12.45931 -12.21042 -12.04628 -11.98605 -11.66090 -11.34858
-11.11382 -11.00755 -10.83687 -10.74682 -10.62056 -10.23046 -9.93347 -9.90217
-9.69211 -9.14173 -8.76807 -8.54237 -8.16376 -7.04968 -5.82128 -3.11644
1.48439 1.57177 2.12824 2.47965 2.62072 3.03925 3.42872 3.48991
3.49854 3.70909 3.89587 4.23925 4.48774 4.53818 4.56726 4.60520
4.73029 4.79265 4.95194 5.09864 5.14685 5.25373 5.33947 5.35784
5.43701 5.45582 5.51878 5.57805 5.66824 5.71400 5.79260 5.86066
5.89803 5.98046 6.11000 6.13755 6.21726 6.33705 6.41172 6.51264
6.53072 6.61381 6.76044 6.93481 7.21447 7.22662 7.39916 7.67853
8.08079 8.34919 9.48014 9.99250 10.34569 11.39610
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.007922 B = 0.004416 C = 0.003214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3533.734446 B = 6339.301880 C = 8710.559562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.016 4.016
3 H 0.134 0.866
4 C 0.212 3.788
5 N -0.410 5.410
6 C 0.518 3.482
7 O -0.521 6.521
8 N -0.601 5.601
9 C 0.102 3.898
10 C -0.125 4.125
11 C -0.057 4.057
12 H 0.081 0.919
13 C -0.056 4.056
14 C -0.076 4.076
15 C -0.151 4.151
16 C 0.084 3.916
17 F -0.148 7.148
18 C -0.149 4.149
19 C -0.080 4.080
20 C 0.177 3.823
21 H 0.053 0.947
22 N -0.710 5.710
23 C -0.243 4.243
24 H 0.070 0.930
25 C -0.005 4.005
26 N -0.928 5.928
27 Si 0.903 3.097
28 H -0.289 1.289
29 H -0.292 1.292
30 H -0.282 1.282
31 C 0.091 3.909
32 H 0.071 0.929
33 H 0.081 0.919
34 H 0.074 0.926
35 H 0.080 0.920
36 H 0.078 0.922
37 H 0.068 0.932
38 H 0.079 0.921
39 H 0.124 0.876
40 H 0.127 0.873
41 H 0.129 0.871
42 H 0.128 0.872
43 H 0.386 0.614
44 H 0.255 0.745
45 H 0.067 0.933
46 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.140 15.061 11.325 19.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.041 4.041
3 H 0.152 0.848
4 C -0.107 4.107
5 N -0.086 5.086
6 C 0.302 3.698
7 O -0.396 6.396
8 N -0.335 5.335
9 C -0.021 4.021
10 C -0.164 4.164
11 C -0.076 4.076
12 H 0.100 0.900
13 C -0.056 4.056
14 C -0.094 4.094
15 C -0.170 4.170
16 C 0.065 3.935
17 F -0.127 7.127
18 C -0.168 4.168
19 C -0.098 4.098
20 C 0.066 3.934
21 H 0.071 0.929
22 N -0.350 5.350
23 C -0.374 4.374
24 H 0.088 0.912
25 C -0.201 4.201
26 N -0.575 5.575
27 Si 0.734 3.266
28 H -0.216 1.216
29 H -0.218 1.218
30 H -0.207 1.207
31 C -0.033 4.033
32 H 0.090 0.910
33 H 0.100 0.900
34 H 0.093 0.907
35 H 0.099 0.901
36 H 0.096 0.904
37 H 0.087 0.913
38 H 0.097 0.903
39 H 0.142 0.858
40 H 0.145 0.855
41 H 0.147 0.853
42 H 0.146 0.854
43 H 0.221 0.779
44 H 0.065 0.935
45 H 0.085 0.915
46 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -3.909 13.571 12.386 18.785
hybrid contribution 0.275 -0.827 -0.902 1.254
sum -3.634 12.744 11.483 17.535
Atomic orbital electron populations
1.21656 0.89339 1.04460 1.03647 1.19039 0.99338 0.99761 0.85914
0.84837 1.28357 0.93899 0.94279 0.94162 1.81252 1.07946 1.07973
1.11408 1.19919 0.81863 0.83181 0.84801 1.90760 1.55411 1.33564
1.59853 1.48345 1.15276 1.35835 1.34014 1.21866 0.91791 0.89986
0.98452 1.21983 0.95395 1.00879 0.98115 1.20526 0.91813 0.98187
0.97086 0.90041 1.19627 0.94551 0.96297 0.95137 1.20726 0.96214
0.95487 0.96998 1.21006 0.91962 1.02021 1.02001 1.17658 0.79930
0.97422 0.98460 1.91451 1.41896 1.87169 1.92210 1.21010 0.99071
0.98472 0.98255 1.20835 0.91038 0.99565 0.98375 1.20516 0.89333
0.91912 0.91668 0.92945 1.42266 1.52338 1.11334 1.29028 1.19180
1.21972 0.88039 1.08211 0.91215 1.24686 0.99374 0.98118 0.97949
1.69644 1.33185 1.36233 1.18454 0.86255 0.77278 0.84956 0.78111
1.21588 1.21788 1.20749 1.22929 0.97913 0.96061 0.86436 0.90992
0.89967 0.90654 0.90133 0.90395 0.91293 0.90289 0.85799 0.85465
0.85331 0.85390 0.77939 0.93483 0.91461 0.88695
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.94 8.59 37.16 0.32 -0.62 16
2 C -0.02 -0.13 2.30 -94.56 -0.22 -0.35 16
3 H 0.13 0.59 6.30 -51.93 -0.33 0.26 16
4 C 0.21 2.33 14.41 -20.76 -0.30 2.03 16
5 N -0.41 -5.59 18.54 42.15 0.78 -4.81 16
6 C 0.52 6.63 6.76 -10.99 -0.07 6.56 16
7 O -0.52 -8.87 15.62 5.56 0.09 -8.79 16
8 N -0.60 -7.46 2.97 -172.76 -0.51 -7.97 16
9 C 0.10 0.87 6.27 -3.71 -0.02 0.85 16
10 C -0.13 -1.27 5.15 -26.61 -0.14 -1.40 16
11 C -0.06 -0.77 1.92 -91.73 -0.18 -0.94 16
12 H 0.08 1.05 7.87 -51.93 -0.41 0.64 16
13 C -0.06 -0.83 4.33 -104.62 -0.45 -1.29 16
14 C -0.08 -1.17 8.74 -39.59 -0.35 -1.52 16
15 C -0.15 -2.34 10.03 -39.52 -0.40 -2.73 16
16 C 0.08 1.35 7.30 -39.42 -0.29 1.06 16
17 F -0.15 -2.40 17.27 2.25 0.04 -2.36 16
18 C -0.15 -2.24 10.03 -39.51 -0.40 -2.64 16
19 C -0.08 -1.18 9.67 -39.59 -0.38 -1.56 16
20 C 0.18 3.11 2.18 -67.81 -0.15 2.96 16
21 H 0.05 1.02 7.39 -51.93 -0.38 0.64 16
22 N -0.71 -16.06 4.67 -53.31 -0.25 -16.31 16
23 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16
24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
25 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16
26 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16
27 Si 0.90 22.36 29.55 -169.99 -5.02 17.34 16
28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
30 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
31 C 0.09 1.48 6.00 -3.71 -0.02 1.46 16
32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16
35 H 0.08 0.47 5.33 -51.93 -0.28 0.19 16
36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16
37 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16
38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.12 1.82 7.13 -52.48 -0.37 1.45 16
40 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16
41 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16
42 H 0.13 1.64 7.94 -52.49 -0.42 1.22 16
43 H 0.39 9.30 7.79 -40.82 -0.32 8.99 16
44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
46 H 0.09 1.87 7.03 -51.93 -0.37 1.51 16
LS Contribution 387.31 15.07 5.84 5.84
Total: -1.00 -33.01 387.31 -7.78 -40.79
By element:
Atomic # 1 Polarization: 13.58 SS G_CDS: -6.18 Total: 7.40 kcal
Atomic # 6 Polarization: -1.65 SS G_CDS: -3.29 Total: -4.94 kcal
Atomic # 7 Polarization: -56.03 SS G_CDS: 0.74 Total: -55.28 kcal
Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.79 kcal
Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -33.01 -7.78 -40.79 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079149596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.183 kcal
(2) G-P(sol) polarization free energy of solvation -33.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.824 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.605 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds