Wall clock time and date at job start Wed Apr 1 2020 03:00:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08999 * 109.47013 * 2 1
4 4 C 1.47202 * 109.47140 * 120.00298 * 2 1 3
5 5 N 2.60805 * 109.47206 * 120.00042 * 2 1 3
6 6 C 1.50698 * 109.47286 * 239.99948 * 2 1 3
7 7 O 1.21280 * 120.00026 * 335.43059 * 6 2 1
8 8 N 1.34774 * 120.00034 * 155.41681 * 6 2 1
9 9 C 1.46921 * 120.63334 * 355.37109 * 8 6 2
10 10 C 1.53200 * 108.77752 * 126.38424 * 9 8 6
11 11 C 1.53041 * 109.31034 * 54.63624 * 10 9 8
12 12 H 1.09000 * 109.45868 * 58.65341 * 11 10 9
13 13 C 1.50696 * 109.45846 * 178.61404 * 11 10 9
14 14 C 1.38251 * 119.97528 * 59.79583 * 13 11 10
15 15 C 1.38196 * 120.02584 * 179.72261 * 14 13 11
16 16 C 1.38459 * 119.97418 * 0.57133 * 15 14 13
17 17 F 1.35098 * 120.02691 * 179.67554 * 16 15 14
18 18 C 1.38465 * 119.94806 * 359.70485 * 16 15 14
19 19 C 1.38199 * 119.97371 * 359.97438 * 18 16 15
20 20 C 1.53047 * 109.53574 * 298.63475 * 11 10 9
21 21 H 1.08991 * 109.49627 * 301.41118 * 20 11 10
22 22 N 1.46503 * 109.49117 * 181.34997 * 20 11 10
23 23 C 1.36938 * 119.99674 * 155.06544 * 22 20 11
24 24 H 1.07996 * 120.00354 * 0.02562 * 23 22 20
25 25 C 1.38818 * 120.00037 * 179.97438 * 23 22 20
26 26 N 1.31611 * 119.99708 * 0.02562 * 25 23 22
27 27 Si 1.86795 * 119.99822 * 179.97438 * 25 23 22
28 28 H 1.48500 * 109.47136 * 90.00471 * 27 25 23
29 29 H 1.48507 * 109.46969 * 210.00097 * 27 25 23
30 30 H 1.48498 * 109.47424 * 330.00003 * 27 25 23
31 31 C 1.46934 * 120.62904 * 175.36253 * 8 6 2
32 32 H 1.09004 * 109.47461 * 304.99772 * 1 2 3
33 33 H 1.08997 * 109.47627 * 65.00029 * 1 2 3
34 34 H 1.09000 * 109.47145 * 184.99989 * 1 2 3
35 35 H 1.09005 * 109.58685 * 6.59835 * 9 8 6
36 36 H 1.09000 * 109.58988 * 246.17117 * 9 8 6
37 37 H 1.09005 * 109.49453 * 294.68845 * 10 9 8
38 38 H 1.09001 * 109.52353 * 174.60238 * 10 9 8
39 39 H 1.08007 * 119.98322 * 359.97438 * 14 13 11
40 40 H 1.07998 * 120.00924 * 180.25109 * 15 14 13
41 41 H 1.08000 * 120.01095 * 180.02562 * 18 16 15
42 42 H 1.08001 * 119.98750 * 180.02562 * 19 18 16
43 43 H 0.96998 * 120.00467 * 335.06604 * 22 20 11
44 44 H 0.97004 * 119.99801 * 179.97438 * 26 25 23
45 45 H 1.08994 * 109.58187 * 113.82813 * 31 8 6
46 46 H 1.09002 * 109.58772 * 353.40423 * 31 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0207 -0.6940 1.2019
5 7 2.3994 -1.2295 2.1294
6 6 2.0323 -0.7104 -1.2304
7 8 1.3339 -1.5337 -1.7830
8 7 3.2577 -0.4307 -1.7170
9 6 4.0746 0.6349 -1.1206
10 6 5.4444 0.0573 -0.7501
11 6 6.0686 -0.5968 -1.9848
12 1 6.1657 0.1441 -2.7783
13 6 7.4309 -1.1363 -1.6326
14 6 7.5604 -2.0919 -0.6419
15 6 8.8085 -2.5915 -0.3220
16 6 9.9309 -2.1261 -0.9858
17 9 11.1523 -2.6090 -0.6693
18 6 9.8006 -1.1648 -1.9738
19 6 8.5507 -0.6714 -2.2966
20 6 5.1746 -1.7429 -2.4640
21 1 5.0570 -2.4720 -1.6625
22 7 5.7890 -2.3889 -3.6265
23 6 5.4920 -3.6927 -3.9217
24 1 4.8046 -4.2446 -3.2978
25 6 6.0738 -4.3048 -5.0235
26 7 6.9111 -3.6321 -5.7841
27 14 5.6692 -6.0835 -5.4257
28 1 4.4937 -6.1311 -6.3318
29 1 6.8345 -6.7175 -6.0930
30 1 5.3578 -6.8160 -4.1720
31 6 3.8019 -1.1857 -2.8539
32 1 -0.3634 0.5894 0.8418
33 1 -0.3634 0.4343 -0.9313
34 1 -0.3633 -1.0238 0.0896
35 1 3.5833 1.0138 -0.2244
36 1 4.2018 1.4439 -1.8399
37 1 5.3241 -0.6889 0.0354
38 1 6.0934 0.8579 -0.3951
39 1 6.6852 -2.4511 -0.1207
40 1 8.9089 -3.3410 0.4491
41 1 10.6754 -0.8013 -2.4925
42 1 8.4488 0.0781 -3.0675
43 1 6.4061 -1.8932 -4.1871
44 1 7.3179 -4.0599 -6.5538
45 1 3.9067 -0.5251 -3.7146
46 1 3.1307 -2.0080 -3.1015
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001079149596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:48
Heat of formation + Delta-G solvation = -33.216556 kcal
Electronic energy + Delta-G solvation = -30649.003088 eV
Core-core repulsion = 26452.567104 eV
Total energy + Delta-G solvation = -4196.435984 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-49.85420 -41.63691 -40.37470 -38.50774 -37.74509 -36.20218 -34.54603 -34.01978
-32.93624 -32.02046 -30.73838 -29.82826 -26.92990 -25.87577 -25.32586 -24.13809
-23.42471 -22.78680 -21.58688 -20.57739 -19.15079 -18.74372 -18.60377 -18.35840
-17.23453 -16.92495 -16.74625 -16.55982 -16.53629 -15.93189 -15.60070 -15.37260
-15.24361 -15.07426 -14.98326 -14.46776 -14.35308 -14.27767 -14.07204 -13.91019
-13.79482 -13.65314 -13.54992 -13.19508 -13.07984 -12.94647 -12.85504 -12.75751
-12.49016 -12.36062 -12.21415 -12.12145 -11.94143 -11.82933 -11.60738 -11.27005
-11.09752 -10.82234 -9.95376 -9.74549 -9.37353 -8.94911 -7.94928 -5.20604
0.27517 0.38544 1.16049 1.43033 1.44372 1.50842 1.63363 1.67753
2.08678 2.54257 2.70238 2.89333 3.36339 3.38319 3.41795 3.65032
3.71203 3.85384 3.93942 4.01079 4.02072 4.08165 4.25320 4.30746
4.40391 4.42194 4.48385 4.52330 4.70546 4.75274 4.86105 4.88925
4.92154 4.94936 5.03563 5.06449 5.15764 5.22675 5.28858 5.32956
5.36803 5.39549 5.45895 5.57141 5.73513 6.03791 6.27517 6.35480
6.43062 7.07524 7.36533 8.08918 8.34190 9.27014
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.007922 B = 0.004416 C = 0.003214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3533.734446 B = 6339.301880 C = 8710.559562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.002 4.002
3 H 0.190 0.810
4 C 0.233 3.767
5 N -0.459 5.459
6 C 0.512 3.488
7 O -0.572 6.572
8 N -0.599 5.599
9 C 0.096 3.904
10 C -0.120 4.120
11 C -0.048 4.048
12 H 0.097 0.903
13 C -0.062 4.062
14 C -0.089 4.089
15 C -0.161 4.161
16 C 0.065 3.935
17 F -0.153 7.153
18 C -0.154 4.154
19 C -0.086 4.086
20 C 0.179 3.821
21 H 0.027 0.973
22 N -0.716 5.716
23 C -0.233 4.233
24 H 0.060 0.940
25 C -0.059 4.059
26 N -0.956 5.956
27 Si 0.952 3.048
28 H -0.288 1.288
29 H -0.295 1.295
30 H -0.280 1.280
31 C 0.105 3.895
32 H 0.104 0.896
33 H 0.091 0.909
34 H 0.048 0.952
35 H 0.119 0.881
36 H 0.108 0.892
37 H 0.055 0.945
38 H 0.111 0.889
39 H 0.124 0.876
40 H 0.137 0.863
41 H 0.146 0.854
42 H 0.150 0.850
43 H 0.380 0.620
44 H 0.250 0.750
45 H 0.072 0.928
46 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.802 18.212 12.427 22.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.026 4.026
3 H 0.206 0.794
4 C -0.085 4.085
5 N -0.135 5.135
6 C 0.298 3.702
7 O -0.450 6.450
8 N -0.331 5.331
9 C -0.025 4.025
10 C -0.158 4.158
11 C -0.067 4.067
12 H 0.115 0.885
13 C -0.062 4.062
14 C -0.107 4.107
15 C -0.180 4.180
16 C 0.046 3.954
17 F -0.132 7.132
18 C -0.172 4.172
19 C -0.104 4.104
20 C 0.069 3.931
21 H 0.045 0.955
22 N -0.356 5.356
23 C -0.365 4.365
24 H 0.078 0.922
25 C -0.252 4.252
26 N -0.606 5.606
27 Si 0.782 3.218
28 H -0.215 1.215
29 H -0.221 1.221
30 H -0.206 1.206
31 C -0.020 4.020
32 H 0.123 0.877
33 H 0.110 0.890
34 H 0.067 0.933
35 H 0.137 0.863
36 H 0.126 0.874
37 H 0.073 0.927
38 H 0.130 0.870
39 H 0.142 0.858
40 H 0.155 0.845
41 H 0.164 0.836
42 H 0.167 0.833
43 H 0.213 0.787
44 H 0.059 0.941
45 H 0.091 0.909
46 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -4.587 16.763 13.553 22.039
hybrid contribution 0.438 -1.795 -1.190 2.198
sum -4.149 14.968 12.362 19.851
Atomic orbital electron populations
1.21720 0.88190 1.03587 1.05574 1.19242 1.00082 1.01265 0.82029
0.79361 1.28751 0.92573 0.93184 0.93961 1.81287 1.09634 1.09345
1.13249 1.20689 0.81361 0.82515 0.85594 1.90747 1.56889 1.35786
1.61622 1.48353 1.15704 1.36159 1.32913 1.22287 0.90385 0.89078
1.00715 1.21993 0.96774 1.01294 0.95776 1.20471 0.90283 0.96717
0.99192 0.88492 1.19854 0.95446 0.96119 0.94772 1.20844 0.96190
0.96058 0.97610 1.21202 0.92035 1.02343 1.02386 1.17891 0.79916
0.98271 0.99333 1.91433 1.42101 1.87333 1.92336 1.21301 1.00080
0.98002 0.97866 1.21135 0.90722 0.99948 0.98548 1.20612 0.90692
0.92708 0.89062 0.95481 1.42306 1.52683 1.10292 1.30330 1.19349
1.20311 0.89644 1.07242 0.92238 1.25234 1.00344 1.01010 0.98622
1.69745 1.34683 1.37162 1.18980 0.85469 0.76740 0.81851 0.77702
1.21539 1.22148 1.20572 1.22306 0.96037 0.95453 0.88231 0.87746
0.89046 0.93295 0.86278 0.87356 0.92658 0.87025 0.85844 0.84473
0.83576 0.83280 0.78703 0.94121 0.90948 0.92979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.49 8.59 71.98 0.62 -0.87 16
2 C 0.00 -0.03 2.30 -13.35 -0.03 -0.06 16
3 H 0.19 0.41 6.30 -2.39 -0.02 0.40 16
4 C 0.23 4.56 14.41 89.44 1.29 5.85 16
5 N -0.46 -11.88 18.54 20.01 0.37 -11.51 16
6 C 0.51 12.21 6.76 87.66 0.59 12.81 16
7 O -0.57 -19.68 15.62 -3.03 -0.05 -19.73 16
8 N -0.60 -13.52 2.97 -818.89 -2.43 -15.95 16
9 C 0.10 1.18 6.27 86.37 0.54 1.72 16
10 C -0.12 -2.00 5.15 30.67 0.16 -1.84 16
11 C -0.05 -1.19 1.92 -11.51 -0.02 -1.21 16
12 H 0.10 2.17 7.87 -2.39 -0.02 2.16 16
13 C -0.06 -1.76 4.33 -19.86 -0.09 -1.85 16
14 C -0.09 -2.72 8.74 22.26 0.19 -2.53 16
15 C -0.16 -4.98 10.03 22.31 0.22 -4.76 16
16 C 0.06 2.06 7.30 22.38 0.16 2.22 16
17 F -0.15 -4.94 17.27 44.97 0.78 -4.16 16
18 C -0.15 -4.46 10.03 22.31 0.22 -4.23 16
19 C -0.09 -2.37 9.67 22.26 0.22 -2.16 16
20 C 0.18 6.27 2.18 45.07 0.10 6.37 16
21 H 0.03 1.09 7.39 -2.39 -0.02 1.07 16
22 N -0.72 -32.87 4.67 -322.57 -1.51 -34.37 16
23 C -0.23 -12.64 9.93 84.03 0.83 -11.81 16
24 H 0.06 3.29 7.83 -2.91 -0.02 3.27 16
25 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16
26 N -0.96 -56.35 13.06 21.65 0.28 -56.06 16
27 Si 0.95 46.93 29.55 68.60 2.03 48.96 16
28 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16
29 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16
30 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16
31 C 0.11 3.41 6.00 86.36 0.52 3.93 16
32 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16
33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
34 H 0.05 0.83 8.03 -2.39 -0.02 0.81 16
35 H 0.12 0.61 5.33 -2.38 -0.01 0.60 16
36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16
37 H 0.05 1.11 7.43 -2.38 -0.02 1.09 16
38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16
39 H 0.12 3.69 7.13 -2.91 -0.02 3.67 16
40 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16
41 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16
42 H 0.15 3.43 7.94 -2.91 -0.02 3.40 16
43 H 0.38 18.39 7.79 -92.71 -0.72 17.67 16
44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16
45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
46 H 0.05 2.14 7.03 -2.39 -0.02 2.13 16
Total: -1.00 -76.91 387.31 5.77 -71.14
By element:
Atomic # 1 Polarization: 22.65 SS G_CDS: 0.30 Total: 22.95 kcal
Atomic # 6 Polarization: -7.26 SS G_CDS: 6.00 Total: -1.26 kcal
Atomic # 7 Polarization: -114.62 SS G_CDS: -3.29 Total: -117.91 kcal
Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal
Atomic # 9 Polarization: -4.94 SS G_CDS: 0.78 Total: -4.16 kcal
Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal
Total: -76.91 5.77 -71.14 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001079149596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.923 kcal
(2) G-P(sol) polarization free energy of solvation -76.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds