Wall clock time and date at job start Wed Apr 1 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99615 * 2 1 4 4 H 1.08996 * 110.88821 * 32.42704 * 3 2 1 5 5 C 1.54907 * 111.00338 * 268.54180 * 3 2 1 6 6 N 1.47424 * 104.83241 * 204.88136 * 5 3 2 7 7 C 1.36943 * 125.64955 * 204.09232 * 6 5 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99622 * 0.30258 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48496 * 109.47031 * 59.99836 * 11 9 7 13 13 H 1.48497 * 109.47267 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47169 * 300.00118 * 11 9 7 15 15 C 1.47024 * 108.70428 * 24.35838 * 6 5 3 16 16 C 1.54336 * 107.26414 * 358.58383 * 15 6 5 17 17 H 1.09005 * 110.66764 * 96.52233 * 16 15 6 18 18 N 1.46498 * 110.85234 * 219.67323 * 16 15 6 19 19 C 1.34774 * 119.99818 * 268.69756 * 18 16 15 20 20 O 1.21574 * 120.00257 * 359.97438 * 19 18 16 21 21 C 1.47693 * 119.99901 * 180.02562 * 19 18 16 22 22 C 1.39984 * 120.38045 * 359.71383 * 21 19 18 23 23 N 1.31385 * 121.15656 * 179.74843 * 22 21 19 24 24 C 1.32545 * 121.79120 * 0.54566 * 23 22 21 25 25 C 1.40794 * 120.62000 * 359.72521 * 24 23 22 26 26 C 1.39482 * 119.13807 * 359.97438 * 25 24 23 27 27 N 1.35778 * 107.11146 * 180.02562 * 25 24 23 28 28 C 1.30065 * 109.43233 * 359.97438 * 27 25 24 29 29 N 1.36172 * 110.11431 * 0.02562 * 28 27 25 30 30 C 1.46494 * 126.23761 * 179.97438 * 29 28 27 31 31 H 1.08998 * 109.47405 * 300.00228 * 1 2 3 32 32 H 1.09009 * 109.47143 * 60.00108 * 1 2 3 33 33 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 34 34 H 1.09001 * 110.36805 * 86.04304 * 5 3 2 35 35 H 1.08999 * 110.36920 * 323.72033 * 5 3 2 36 36 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.88094 * 118.13011 * 15 6 5 38 38 H 1.09003 * 109.88256 * 239.30018 * 15 6 5 39 39 H 0.97000 * 119.99653 * 88.69095 * 18 16 15 40 40 H 1.08005 * 119.41956 * 0.02562 * 22 21 19 41 41 H 1.08006 * 120.97018 * 180.02562 * 26 25 24 42 42 H 1.08002 * 124.94194 * 180.02562 * 28 27 25 43 43 H 1.09009 * 109.47228 * 89.96963 * 30 29 28 44 44 H 1.08993 * 109.47223 * 209.97020 * 30 29 28 45 45 H 1.09005 * 109.47254 * 329.97380 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5461 5 6 2.2695 1.7978 -1.4457 6 7 3.3604 2.7814 -1.3194 7 6 3.6225 3.7996 -2.1968 8 1 4.4495 4.4700 -2.0146 9 6 2.8219 3.9735 -3.3173 10 7 1.8142 3.1565 -3.5394 11 14 3.1747 5.3671 -4.5101 12 1 4.5419 5.2076 -5.0673 13 1 2.1835 5.3356 -5.6154 14 1 3.0796 6.6658 -3.7961 15 6 4.1242 2.4842 -0.0988 16 6 3.4484 1.2749 0.5814 17 1 3.9544 0.3484 0.3100 18 7 3.4228 1.4422 2.0366 19 6 4.4335 0.9621 2.7879 20 8 5.3662 0.3899 2.2581 21 6 4.4075 1.1302 4.2550 22 6 3.3400 1.7921 4.8729 23 7 3.2989 1.9459 6.1771 24 6 4.2650 1.4943 6.9643 25 6 5.3768 0.8221 6.4217 26 6 5.4504 0.6355 5.0414 27 7 6.1845 0.4838 7.4593 28 6 5.6534 0.8951 8.5731 29 7 4.4711 1.5232 8.3242 30 6 3.5809 2.1204 9.3226 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.3759 2.2724 -1.8509 35 1 2.5794 0.9669 -2.0795 36 1 1.2550 3.2778 -4.3226 37 1 5.1545 2.2390 -0.3567 38 1 4.1021 3.3439 0.5709 39 1 2.6785 1.8985 2.4593 40 1 2.5338 2.1792 4.2674 41 1 6.2895 0.1237 4.5937 42 1 6.0870 0.7583 9.5527 43 1 3.8559 3.1639 9.4768 44 1 2.5508 2.0643 8.9708 45 1 3.6736 1.5775 10.2633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082017597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:16 Heat of formation + Delta-G solvation = 55.302155 kcal Electronic energy + Delta-G solvation = -29647.788115 eV Core-core repulsion = 25475.110551 eV Total energy + Delta-G solvation = -4172.677563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.73021 -40.05419 -38.56737 -37.75937 -35.91123 -34.92634 -34.14317 -32.31178 -31.74498 -30.20569 -28.77015 -27.76670 -27.04161 -26.10415 -24.83092 -24.16317 -23.68838 -21.28976 -21.01649 -20.59122 -19.96025 -18.36836 -18.09081 -17.41257 -16.80267 -16.54826 -16.47769 -15.87781 -15.43327 -14.84315 -14.80198 -14.63460 -14.37673 -14.27739 -13.95999 -13.88677 -13.70497 -13.31448 -13.20411 -13.17471 -12.88140 -12.68159 -12.24224 -11.86685 -11.48004 -11.33720 -11.28620 -11.08435 -11.01729 -10.82078 -10.80844 -10.24409 -10.09080 -9.89187 -9.79471 -9.48558 -9.14838 -9.03577 -8.93737 -8.70579 -8.68005 -6.90522 -5.69834 -3.12910 0.44170 0.54698 1.89062 2.35695 2.86203 3.11004 3.39647 3.43961 3.45154 3.66217 3.67139 3.89954 4.11842 4.13235 4.44894 4.49513 4.53254 4.64585 4.66258 4.71653 4.94398 5.06508 5.23633 5.42279 5.46061 5.51396 5.61781 5.66676 5.68819 5.74589 5.82556 5.85523 5.97420 6.06182 6.14079 6.19789 6.43761 6.46469 6.67895 6.87193 7.25235 7.28358 7.42534 7.53848 7.61313 7.72718 7.79046 8.25392 8.31091 9.15707 9.76071 10.38352 11.33886 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.002318 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.584543 B =12074.870413 C =12604.563007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.139 3.861 6 N -0.600 5.600 7 C -0.222 4.222 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.924 5.924 11 Si 0.917 3.083 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.106 0.894 18 N -0.708 5.708 19 C 0.569 3.431 20 O -0.531 6.531 21 C -0.194 4.194 22 C 0.175 3.825 23 N -0.484 5.484 24 C 0.254 3.746 25 C -0.009 4.009 26 C 0.049 3.951 27 N -0.479 5.479 28 C 0.271 3.729 29 N -0.486 5.486 30 C 0.080 3.920 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.027 0.973 36 H 0.254 0.746 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.396 0.604 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 -3.655 26.277 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.006 4.006 4 H 0.085 0.915 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.098 0.902 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.124 0.876 18 N -0.359 5.359 19 C 0.354 3.646 20 O -0.408 6.408 21 C -0.202 4.202 22 C 0.006 3.994 23 N -0.196 5.196 24 C 0.018 3.982 25 C -0.128 4.128 26 C 0.021 3.979 27 N -0.197 5.197 28 C -0.016 4.016 29 N -0.178 5.178 30 C -0.061 4.061 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.231 0.769 40 H 0.187 0.813 41 H 0.175 0.825 42 H 0.240 0.760 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.382 -4.114 26.144 26.468 hybrid contribution -0.500 1.198 -0.498 1.390 sum -0.882 -2.916 25.646 25.826 Atomic orbital electron populations 1.22699 0.81551 1.01911 1.00040 1.87848 1.19266 1.27632 1.95136 1.24031 0.92117 0.83840 1.00569 0.91524 1.22340 0.95387 0.91897 0.89009 1.44302 1.31706 1.33092 1.23718 1.19049 1.11075 1.04128 1.00791 0.90232 1.24798 0.98013 0.99317 0.98434 1.69731 1.19860 1.38606 1.29000 0.86109 0.77376 0.81359 0.80397 1.21103 1.21554 1.21130 1.21620 0.95224 0.93613 0.89276 1.22180 0.96634 1.00658 0.77248 0.87578 1.45876 1.23429 1.58743 1.07835 1.17758 0.82648 0.78806 0.85366 1.90806 1.34195 1.42268 1.73504 1.20717 0.98184 1.06389 0.94919 1.22741 0.95897 0.92399 0.88385 1.66353 1.26452 1.21657 1.05172 1.19105 0.94182 0.99368 0.85515 1.19540 0.94508 1.04438 0.94351 1.20872 0.96786 0.91420 0.88829 1.70504 1.28926 1.23329 0.96928 1.25507 0.82943 0.93167 0.99985 1.45068 1.20398 1.47889 1.04463 1.22060 0.94527 0.99092 0.90447 0.94781 0.93400 0.90352 0.86938 0.95535 0.93548 0.94692 0.95095 0.76883 0.81322 0.82536 0.75982 0.90397 0.89074 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.89 101.05 1.10 1.59 16 2 O -0.38 -6.84 10.52 -35.23 -0.37 -7.21 16 3 C 0.05 1.01 3.12 -24.58 -0.08 0.93 16 4 H 0.07 1.14 7.77 -51.93 -0.40 0.74 16 5 C 0.14 3.34 5.63 -2.53 -0.01 3.32 16 6 N -0.60 -15.23 3.39 -170.06 -0.58 -15.80 16 7 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 10 N -0.92 -26.34 10.09 55.49 0.56 -25.78 16 11 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.13 2.77 7.01 -3.06 -0.02 2.75 16 16 C 0.14 2.54 3.05 -66.09 -0.20 2.34 16 17 H 0.11 2.17 7.55 -51.93 -0.39 1.78 16 18 N -0.71 -10.41 5.06 -53.01 -0.27 -10.68 16 19 C 0.57 8.80 7.77 -12.40 -0.10 8.70 16 20 O -0.53 -10.16 16.04 5.30 0.09 -10.07 16 21 C -0.19 -2.50 5.89 -104.85 -0.62 -3.12 16 22 C 0.18 1.93 10.69 -17.09 -0.18 1.75 16 23 N -0.48 -5.67 10.36 -11.96 -0.12 -5.79 16 24 C 0.25 2.94 7.99 -155.63 -1.24 1.69 16 25 C -0.01 -0.11 7.23 -84.69 -0.61 -0.72 16 26 C 0.05 0.64 9.75 -38.59 -0.38 0.26 16 27 N -0.48 -5.49 11.29 -12.02 -0.14 -5.63 16 28 C 0.27 1.96 12.50 -89.69 -1.12 0.84 16 29 N -0.49 -3.87 3.19 -124.99 -0.40 -4.27 16 30 C 0.08 0.30 11.18 59.84 0.67 0.97 16 31 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.11 2.96 5.86 -51.93 -0.30 2.66 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 39 H 0.40 4.57 6.60 -40.82 -0.27 4.30 16 40 H 0.17 1.37 6.39 -52.48 -0.34 1.04 16 41 H 0.16 2.06 7.72 -52.48 -0.41 1.66 16 42 H 0.22 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.08 0.23 8.14 -51.92 -0.42 -0.20 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -36.08 378.48 -9.47 -45.55 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.88 Total: 2.52 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: -3.04 Total: 14.66 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.94 Total: -67.95 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.29 Total: -17.29 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.08 -9.47 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082017597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.851 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds