Wall clock time and date at job start Wed Apr 1 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99615 * 2 1 4 4 H 1.08996 * 110.88821 * 32.42704 * 3 2 1 5 5 C 1.54907 * 111.00338 * 268.54180 * 3 2 1 6 6 N 1.47424 * 104.83241 * 204.88136 * 5 3 2 7 7 C 1.36943 * 125.64955 * 204.09232 * 6 5 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99622 * 0.30258 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48496 * 109.47031 * 59.99836 * 11 9 7 13 13 H 1.48497 * 109.47267 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47169 * 300.00118 * 11 9 7 15 15 C 1.47024 * 108.70428 * 24.35838 * 6 5 3 16 16 C 1.54336 * 107.26414 * 358.58383 * 15 6 5 17 17 H 1.09005 * 110.66764 * 96.52233 * 16 15 6 18 18 N 1.46498 * 110.85234 * 219.67323 * 16 15 6 19 19 C 1.34774 * 119.99818 * 268.69756 * 18 16 15 20 20 O 1.21574 * 120.00257 * 359.97438 * 19 18 16 21 21 C 1.47693 * 119.99901 * 180.02562 * 19 18 16 22 22 C 1.39984 * 120.38045 * 359.71383 * 21 19 18 23 23 N 1.31385 * 121.15656 * 179.74843 * 22 21 19 24 24 C 1.32545 * 121.79120 * 0.54566 * 23 22 21 25 25 C 1.40794 * 120.62000 * 359.72521 * 24 23 22 26 26 C 1.39482 * 119.13807 * 359.97438 * 25 24 23 27 27 N 1.35778 * 107.11146 * 180.02562 * 25 24 23 28 28 C 1.30065 * 109.43233 * 359.97438 * 27 25 24 29 29 N 1.36172 * 110.11431 * 0.02562 * 28 27 25 30 30 C 1.46494 * 126.23761 * 179.97438 * 29 28 27 31 31 H 1.08998 * 109.47405 * 300.00228 * 1 2 3 32 32 H 1.09009 * 109.47143 * 60.00108 * 1 2 3 33 33 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 34 34 H 1.09001 * 110.36805 * 86.04304 * 5 3 2 35 35 H 1.08999 * 110.36920 * 323.72033 * 5 3 2 36 36 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.88094 * 118.13011 * 15 6 5 38 38 H 1.09003 * 109.88256 * 239.30018 * 15 6 5 39 39 H 0.97000 * 119.99653 * 88.69095 * 18 16 15 40 40 H 1.08005 * 119.41956 * 0.02562 * 22 21 19 41 41 H 1.08006 * 120.97018 * 180.02562 * 26 25 24 42 42 H 1.08002 * 124.94194 * 180.02562 * 28 27 25 43 43 H 1.09009 * 109.47228 * 89.96963 * 30 29 28 44 44 H 1.08993 * 109.47223 * 209.97020 * 30 29 28 45 45 H 1.09005 * 109.47254 * 329.97380 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5461 5 6 2.2695 1.7978 -1.4457 6 7 3.3604 2.7814 -1.3194 7 6 3.6225 3.7996 -2.1968 8 1 4.4495 4.4700 -2.0146 9 6 2.8219 3.9735 -3.3173 10 7 1.8142 3.1565 -3.5394 11 14 3.1747 5.3671 -4.5101 12 1 4.5419 5.2076 -5.0673 13 1 2.1835 5.3356 -5.6154 14 1 3.0796 6.6658 -3.7961 15 6 4.1242 2.4842 -0.0988 16 6 3.4484 1.2749 0.5814 17 1 3.9544 0.3484 0.3100 18 7 3.4228 1.4422 2.0366 19 6 4.4335 0.9621 2.7879 20 8 5.3662 0.3899 2.2581 21 6 4.4075 1.1302 4.2550 22 6 3.3400 1.7921 4.8729 23 7 3.2989 1.9459 6.1771 24 6 4.2650 1.4943 6.9643 25 6 5.3768 0.8221 6.4217 26 6 5.4504 0.6355 5.0414 27 7 6.1845 0.4838 7.4593 28 6 5.6534 0.8951 8.5731 29 7 4.4711 1.5232 8.3242 30 6 3.5809 2.1204 9.3226 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.3759 2.2724 -1.8509 35 1 2.5794 0.9669 -2.0795 36 1 1.2550 3.2778 -4.3226 37 1 5.1545 2.2390 -0.3567 38 1 4.1021 3.3439 0.5709 39 1 2.6785 1.8985 2.4593 40 1 2.5338 2.1792 4.2674 41 1 6.2895 0.1237 4.5937 42 1 6.0870 0.7583 9.5527 43 1 3.8559 3.1639 9.4768 44 1 2.5508 2.0643 8.9708 45 1 3.6736 1.5775 10.2633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082017597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:15 Heat of formation + Delta-G solvation = 29.859486 kcal Electronic energy + Delta-G solvation = -29648.891392 eV Core-core repulsion = 25475.110551 eV Total energy + Delta-G solvation = -4173.780840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.47229 -41.31515 -39.87386 -38.90936 -37.49315 -35.77286 -35.53225 -33.81462 -32.99352 -31.24221 -30.37000 -28.88384 -28.08866 -27.51128 -26.26749 -25.13742 -24.84945 -22.51257 -22.12618 -21.98126 -21.51129 -19.49796 -18.92208 -18.85936 -18.14798 -17.77937 -17.21445 -17.13859 -16.85379 -16.33722 -16.06020 -15.82735 -15.72306 -15.40403 -15.13969 -14.92903 -14.74622 -14.50531 -14.39592 -14.22321 -13.92049 -13.68028 -13.50557 -13.43667 -13.16279 -13.00432 -12.68773 -12.58361 -12.33565 -12.13337 -12.07889 -11.87760 -11.84139 -11.52339 -11.33787 -10.77507 -10.59283 -10.39172 -10.21361 -9.81945 -9.73408 -8.95241 -7.78992 -5.26073 -0.47817 -0.29173 1.29612 1.48423 1.51788 1.57898 1.62975 1.78474 1.87035 2.46641 2.69690 2.75730 2.91018 3.25236 3.31836 3.49377 3.55420 3.62124 3.68609 3.84832 3.97615 4.01437 4.06712 4.09273 4.29800 4.40129 4.45501 4.48267 4.63690 4.69502 4.74554 4.75691 4.80943 4.86952 4.91711 4.93647 5.01585 5.30070 5.32912 5.40969 5.46493 5.70694 5.89375 6.21035 6.33387 6.41155 6.59410 6.59946 7.06039 7.09211 7.71121 8.33375 9.22146 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.002318 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.584543 B =12074.870413 C =12604.563007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.077 3.923 4 H 0.094 0.906 5 C 0.144 3.856 6 N -0.618 5.618 7 C -0.242 4.242 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.282 1.282 13 H -0.292 1.292 14 H -0.273 1.273 15 C 0.130 3.870 16 C 0.154 3.846 17 H 0.084 0.916 18 N -0.693 5.693 19 C 0.573 3.427 20 O -0.574 6.574 21 C -0.199 4.199 22 C 0.179 3.821 23 N -0.486 5.486 24 C 0.241 3.759 25 C -0.027 4.027 26 C 0.033 3.967 27 N -0.525 5.525 28 C 0.296 3.704 29 N -0.482 5.482 30 C 0.074 3.926 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.089 0.911 35 H -0.012 1.012 36 H 0.250 0.750 37 H 0.018 0.982 38 H 0.046 0.954 39 H 0.415 0.585 40 H 0.199 0.801 41 H 0.143 0.857 42 H 0.278 0.722 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -2.639 29.858 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.017 3.983 4 H 0.112 0.888 5 C 0.018 3.982 6 N -0.346 5.346 7 C -0.371 4.371 8 H 0.100 0.900 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.811 3.189 12 H -0.209 1.209 13 H -0.218 1.218 14 H -0.199 1.199 15 C 0.003 3.997 16 C 0.048 3.952 17 H 0.102 0.898 18 N -0.345 5.345 19 C 0.361 3.639 20 O -0.454 6.454 21 C -0.207 4.207 22 C 0.010 3.990 23 N -0.198 5.198 24 C 0.004 3.996 25 C -0.147 4.147 26 C 0.006 3.994 27 N -0.244 5.244 28 C 0.010 3.990 29 N -0.173 5.173 30 C -0.066 4.066 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.006 0.994 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.254 0.746 40 H 0.216 0.784 41 H 0.161 0.839 42 H 0.294 0.706 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.467 -3.081 29.799 29.994 hybrid contribution -0.138 0.832 -1.448 1.676 sum -1.604 -2.248 28.351 28.485 Atomic orbital electron populations 1.22972 0.79311 1.03825 1.00801 1.87842 1.21718 1.26816 1.95010 1.23633 0.92709 0.84893 0.97075 0.88825 1.22106 0.93872 0.90236 0.91952 1.44548 1.32682 1.32830 1.24558 1.19408 1.11249 1.04786 1.01643 0.89974 1.25632 0.98013 1.01737 1.00068 1.69971 1.20517 1.39966 1.29157 0.85091 0.76922 0.78862 0.78057 1.20867 1.21763 1.19873 1.21695 0.94216 0.95291 0.88459 1.21664 0.95958 0.98288 0.79254 0.89821 1.45575 1.24097 1.58772 1.06023 1.18104 0.81768 0.77639 0.86401 1.90787 1.35877 1.44199 1.74514 1.20413 0.99349 1.08082 0.92892 1.23102 0.95751 0.91614 0.88563 1.66465 1.26407 1.21721 1.05248 1.19443 0.93739 0.99127 0.87248 1.19678 0.95551 1.05060 0.94390 1.20864 0.96786 0.92036 0.89751 1.70496 1.30229 1.25766 0.97883 1.26633 0.81743 0.89826 1.00777 1.45471 1.20972 1.47260 1.03605 1.22413 0.93327 1.00200 0.90653 0.91882 0.94688 0.87998 0.89305 0.99427 0.94042 0.96441 0.93619 0.74603 0.78448 0.83900 0.70640 0.89269 0.89786 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.89 113.37 1.23 1.94 16 2 O -0.40 -13.97 10.52 -148.98 -1.57 -15.54 16 3 C 0.08 2.85 3.12 31.99 0.10 2.95 16 4 H 0.09 3.01 7.77 -2.39 -0.02 2.99 16 5 C 0.14 7.15 5.63 86.85 0.49 7.64 16 6 N -0.62 -32.23 3.39 -691.96 -2.35 -34.58 16 7 C -0.24 -13.60 10.27 84.03 0.86 -12.74 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 10 N -0.95 -55.48 10.09 21.65 0.22 -55.26 16 11 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 C 0.13 5.67 7.01 86.73 0.61 6.28 16 16 C 0.15 5.77 3.05 46.19 0.14 5.91 16 17 H 0.08 3.56 7.55 -2.38 -0.02 3.54 16 18 N -0.69 -19.81 5.06 -439.89 -2.23 -22.03 16 19 C 0.57 17.92 7.77 86.74 0.67 18.59 16 20 O -0.57 -22.93 16.04 -3.95 -0.06 -22.99 16 21 C -0.20 -5.12 5.89 -20.01 -0.12 -5.24 16 22 C 0.18 3.66 10.69 85.18 0.91 4.57 16 23 N -0.49 -10.47 10.36 -191.76 -1.99 -12.46 16 24 C 0.24 5.18 7.99 133.91 1.07 6.25 16 25 C -0.03 -0.68 7.23 39.46 0.29 -0.40 16 26 C 0.03 0.91 9.75 22.91 0.22 1.13 16 27 N -0.52 -11.40 11.29 -191.93 -2.17 -13.57 16 28 C 0.30 3.32 12.50 180.02 2.25 5.57 16 29 N -0.48 -6.17 3.19 -549.35 -1.75 -7.93 16 30 C 0.07 0.26 11.18 127.77 1.43 1.69 16 31 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 4.84 5.86 -2.39 -0.01 4.83 16 35 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 1.86 8.03 -2.39 -0.02 1.85 16 39 H 0.42 8.61 6.60 -92.71 -0.61 8.00 16 40 H 0.20 2.64 6.39 -2.91 -0.02 2.62 16 41 H 0.14 4.12 7.72 -2.91 -0.02 4.09 16 42 H 0.28 -0.45 8.06 -2.91 -0.02 -0.48 16 43 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.13 -0.51 8.14 -2.38 -0.02 -0.53 16 Total: -1.00 -83.24 378.48 1.18 -82.06 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.43 Total: 13.83 kcal Atomic # 6 Polarization: 30.53 SS G_CDS: 10.62 Total: 41.15 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -10.26 Total: -145.83 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.63 Total: -38.53 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -83.24 1.18 -82.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082017597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.918 kcal (2) G-P(sol) polarization free energy of solvation -83.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds