Wall clock time and date at job start Wed Apr 1 2020 03:41:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42898 * 114.00403 * 2 1
4 4 H 1.08998 * 110.88442 * 32.42780 * 3 2 1
5 5 C 1.54917 * 111.00398 * 268.54749 * 3 2 1
6 6 N 1.47422 * 104.83074 * 204.87574 * 5 3 2
7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 3
8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5
9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5
10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6
12 12 H 1.48502 * 109.47583 * 359.97438 * 11 9 7
13 13 H 1.48506 * 109.46831 * 119.99792 * 11 9 7
14 14 H 1.48497 * 109.47398 * 239.99526 * 11 9 7
15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 3
16 16 C 1.54316 * 107.27568 * 358.94070 * 15 6 5
17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 6
18 18 N 1.46500 * 110.72232 * 219.44595 * 16 15 6
19 19 C 1.34778 * 119.99379 * 268.51936 * 18 16 15
20 20 O 1.21563 * 120.00507 * 359.97438 * 19 18 16
21 21 C 1.47727 * 119.99489 * 179.97438 * 19 18 16
22 22 C 1.40249 * 119.88278 * 359.97438 * 21 19 18
23 23 C 1.36165 * 120.56163 * 179.97438 * 22 21 19
24 24 C 1.39909 * 119.97102 * 0.02562 * 23 22 21
25 25 N 1.34752 * 134.58823 * 179.97438 * 24 23 22
26 26 N 1.28650 * 109.29147 * 180.02562 * 25 24 23
27 27 N 1.28816 * 111.79058 * 0.02562 * 26 25 24
28 28 C 1.46500 * 125.94163 * 180.02562 * 27 26 25
29 29 C 1.37368 * 108.11623 * 359.97438 * 27 26 25
30 30 C 1.38621 * 134.88802 * 180.32254 * 29 27 26
31 31 H 1.09000 * 109.46919 * 300.00196 * 1 2 3
32 32 H 1.08999 * 109.47310 * 59.99456 * 1 2 3
33 33 H 1.08995 * 109.47537 * 179.97438 * 1 2 3
34 34 H 1.08998 * 110.36726 * 323.71587 * 5 3 2
35 35 H 1.09005 * 110.36534 * 86.04108 * 5 3 2
36 36 H 0.96998 * 119.99446 * 180.02562 * 10 9 7
37 37 H 1.09000 * 109.88493 * 239.51822 * 15 6 5
38 38 H 1.09005 * 110.00581 * 118.43132 * 15 6 5
39 39 H 0.97001 * 120.00302 * 88.51904 * 18 16 15
40 40 H 1.08003 * 119.72468 * 359.97438 * 22 21 19
41 41 H 1.07997 * 120.01585 * 180.02562 * 23 22 21
42 42 H 1.09004 * 109.46954 * 89.96846 * 28 27 26
43 43 H 1.08997 * 109.47037 * 209.96929 * 28 27 26
44 44 H 1.08999 * 109.46899 * 329.97067 * 28 27 26
45 45 H 1.07995 * 120.24703 * 359.93878 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3831 2.0100 0.5461
5 6 2.2697 1.7977 -1.4458
6 7 3.3606 2.7813 -1.3195
7 6 3.6227 3.7994 -2.1969
8 1 4.4496 4.4698 -2.0147
9 6 2.8254 3.9700 -3.3204
10 7 1.8179 3.1527 -3.5426
11 14 3.1826 5.3593 -4.5168
12 1 4.3598 6.1305 -4.0429
13 1 3.4684 4.7945 -5.8602
14 1 2.0031 6.2578 -4.5984
15 6 4.1210 2.4873 -0.0960
16 6 3.4486 1.2747 0.5813
17 1 3.9556 0.3495 0.3072
18 7 3.4231 1.4420 2.0365
19 6 4.4338 0.9618 2.7877
20 8 5.3663 0.3895 2.2579
21 6 4.4084 1.1309 4.2550
22 6 3.3316 1.7921 4.8637
23 6 3.2938 1.9552 6.2150
24 6 4.3354 1.4617 7.0080
25 7 4.5971 1.4564 8.3298
26 7 5.7169 0.8585 8.5390
27 7 6.2516 0.4472 7.4416
28 6 7.5233 -0.2701 7.3208
29 6 5.4215 0.7971 6.4046
30 6 5.4508 0.6296 5.0288
31 1 -0.3633 0.5139 0.8900
32 1 -0.3634 0.5139 -0.8899
33 1 -0.3634 -1.0276 -0.0005
34 1 2.5795 0.9669 -2.0796
35 1 1.3760 2.2725 -1.8509
36 1 1.2611 3.2717 -4.3279
37 1 4.0942 3.3475 0.5728
38 1 5.1537 2.2458 -0.3478
39 1 2.6788 1.8983 2.4593
40 1 2.5255 2.1751 4.2554
41 1 2.4601 2.4654 6.6744
42 1 7.3427 -1.3432 7.3852
43 1 7.9826 -0.0359 6.3604
44 1 8.1905 0.0351 8.1268
45 1 6.2781 0.1172 4.5606
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001082346365.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:41:13
Heat of formation + Delta-G solvation = 79.891671 kcal
Electronic energy + Delta-G solvation = -29706.962249 eV
Core-core repulsion = 25535.350967 eV
Total energy + Delta-G solvation = -4171.611282 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.51255 -40.15221 -38.45753 -37.46747 -35.95862 -35.22712 -34.23884 -32.03037
-31.16749 -30.88048 -28.84013 -28.29872 -27.23421 -26.14625 -25.05544 -23.98517
-23.76706 -21.49363 -21.17568 -20.64752 -20.04833 -18.61161 -18.05330 -17.27356
-17.07878 -16.66149 -16.45013 -15.75269 -15.35915 -14.84033 -14.76305 -14.61624
-14.46105 -14.30708 -13.99879 -13.93500 -13.66197 -13.31627 -13.25029 -12.94143
-12.47130 -12.37153 -12.27756 -12.06782 -11.88840 -11.50476 -11.33660 -11.15239
-11.05758 -11.04645 -10.87617 -10.85472 -10.21977 -10.02228 -9.93015 -9.84170
-9.35527 -9.15481 -8.80682 -8.74691 -8.66150 -6.94759 -5.74062 -3.17169
0.01726 0.82258 1.76654 1.81003 2.74783 3.06994 3.35780 3.41743
3.44095 3.51151 3.59812 4.03659 4.07299 4.26965 4.40995 4.49106
4.52501 4.65950 4.67723 4.81870 4.93896 4.96224 5.17187 5.38121
5.47053 5.49524 5.57412 5.61798 5.63842 5.65720 5.78891 5.83614
5.86796 5.93842 6.01767 6.07746 6.13931 6.21568 6.37197 6.61546
6.81003 7.20603 7.49185 7.55595 7.68569 7.74619 7.94933 8.18939
8.24127 9.11630 9.71944 10.33862 11.29851
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.017107 B = 0.002347 C = 0.002228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1636.392912 B =11929.798855 C =12566.856660
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.381 6.381
3 C 0.054 3.946
4 H 0.067 0.933
5 C 0.139 3.861
6 N -0.600 5.600
7 C -0.222 4.222
8 H 0.081 0.919
9 C -0.010 4.010
10 N -0.923 5.923
11 Si 0.917 3.083
12 H -0.279 1.279
13 H -0.290 1.290
14 H -0.290 1.290
15 C 0.130 3.870
16 C 0.136 3.864
17 H 0.106 0.894
18 N -0.705 5.705
19 C 0.560 3.440
20 O -0.533 6.533
21 C -0.096 4.096
22 C -0.089 4.089
23 C -0.054 4.054
24 C 0.027 3.973
25 N -0.258 5.258
26 N -0.017 5.017
27 N -0.315 5.315
28 C 0.085 3.915
29 C 0.013 3.987
30 C -0.034 4.034
31 H 0.034 0.966
32 H 0.048 0.952
33 H 0.078 0.922
34 H 0.027 0.973
35 H 0.113 0.887
36 H 0.253 0.747
37 H 0.031 0.969
38 H 0.034 0.966
39 H 0.398 0.602
40 H 0.142 0.858
41 H 0.145 0.855
42 H 0.092 0.908
43 H 0.101 0.899
44 H 0.104 0.896
45 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.054 -6.456 20.086 21.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.299 6.299
3 C -0.006 4.006
4 H 0.085 0.915
5 C 0.014 3.986
6 N -0.328 5.328
7 C -0.350 4.350
8 H 0.099 0.901
9 C -0.206 4.206
10 N -0.571 5.571
11 Si 0.747 3.253
12 H -0.205 1.205
13 H -0.217 1.217
14 H -0.217 1.217
15 C 0.003 3.997
16 C 0.032 3.968
17 H 0.124 0.876
18 N -0.356 5.356
19 C 0.346 3.654
20 O -0.410 6.410
21 C -0.103 4.103
22 C -0.111 4.111
23 C -0.076 4.076
24 C -0.099 4.099
25 N -0.132 5.132
26 N 0.002 4.998
27 N -0.116 5.116
28 C -0.056 4.056
29 C -0.105 4.105
30 C -0.056 4.056
31 H 0.052 0.948
32 H 0.066 0.934
33 H 0.097 0.903
34 H 0.045 0.955
35 H 0.131 0.869
36 H 0.064 0.936
37 H 0.049 0.951
38 H 0.052 0.948
39 H 0.234 0.766
40 H 0.159 0.841
41 H 0.163 0.837
42 H 0.111 0.889
43 H 0.119 0.881
44 H 0.123 0.877
45 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 3.985 -6.911 21.027 22.490
hybrid contribution -0.286 0.921 -1.503 1.786
sum 3.698 -5.991 19.524 20.755
Atomic orbital electron populations
1.22701 0.81485 1.01949 1.00072 1.87843 1.19323 1.27616 1.95140
1.24035 0.92078 0.83872 1.00569 0.91520 1.22340 0.95387 0.91909
0.88995 1.44307 1.31850 1.33148 1.23508 1.19138 1.11169 1.04122
1.00582 0.90118 1.24808 0.98031 0.99328 0.98416 1.69758 1.20013
1.38591 1.28762 0.85960 0.77425 0.81053 0.80825 1.20451 1.21655
1.21698 1.21605 0.95238 0.93568 0.89286 1.22194 0.96722 1.00636
0.77255 0.87578 1.45898 1.23459 1.58397 1.07834 1.17976 0.82690
0.78928 0.85806 1.90794 1.34257 1.42329 1.73664 1.19825 0.95698
1.01240 0.93571 1.20921 0.97734 0.98006 0.94419 1.19921 0.96739
0.98927 0.92041 1.20090 0.96684 1.02322 0.90826 1.75370 1.07139
1.16782 1.13905 1.77995 1.04160 1.08124 1.09512 1.47137 1.18883
1.42023 1.03523 1.22308 0.80265 0.97149 1.05838 1.19615 0.93904
1.04951 0.92057 1.20063 0.99111 0.98299 0.88173 0.94754 0.93380
0.90318 0.95501 0.86950 0.93622 0.95119 0.94769 0.76631 0.84067
0.83689 0.88936 0.88063 0.87722 0.83566
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.48 10.89 101.05 1.10 1.58 16
2 O -0.38 -6.66 10.52 -35.23 -0.37 -7.04 16
3 C 0.05 0.98 3.12 -24.58 -0.08 0.91 16
4 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16
5 C 0.14 3.27 5.62 -2.53 -0.01 3.26 16
6 N -0.60 -14.93 3.39 -170.07 -0.58 -15.50 16
7 C -0.22 -6.02 10.27 -15.06 -0.15 -6.17 16
8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16
9 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16
10 N -0.92 -26.00 10.09 55.49 0.56 -25.44 16
11 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16
12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
13 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
15 C 0.13 2.70 6.99 -3.07 -0.02 2.68 16
16 C 0.14 2.44 3.05 -66.10 -0.20 2.23 16
17 H 0.11 2.10 7.55 -51.93 -0.39 1.70 16
18 N -0.71 -9.84 5.05 -53.01 -0.27 -10.11 16
19 C 0.56 8.02 7.77 -12.38 -0.10 7.92 16
20 O -0.53 -9.47 15.97 5.31 0.08 -9.38 16
21 C -0.10 -1.09 5.88 -104.92 -0.62 -1.70 16
22 C -0.09 -0.81 9.46 -39.57 -0.37 -1.18 16
23 C -0.05 -0.50 10.03 -39.70 -0.40 -0.90 16
24 C 0.03 0.31 7.36 -84.95 -0.63 -0.31 16
25 N -0.26 -3.31 12.42 32.09 0.40 -2.91 16
26 N -0.02 -0.20 13.07 60.35 0.79 0.59 16
27 N -0.32 -2.99 3.80 -65.54 -0.25 -3.23 16
28 C 0.09 0.37 11.40 59.85 0.68 1.05 16
29 C 0.01 0.14 6.94 -84.23 -0.58 -0.44 16
30 C -0.03 -0.36 9.59 -39.10 -0.38 -0.74 16
31 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16
32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16
36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16
37 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16
38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
39 H 0.40 4.35 6.56 -40.82 -0.27 4.09 16
40 H 0.14 0.93 6.36 -52.48 -0.33 0.59 16
41 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16
42 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16
43 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16
44 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16
45 H 0.15 1.44 7.63 -52.49 -0.40 1.03 16
LS Contribution 378.12 15.07 5.70 5.70
Total: -1.00 -34.51 378.12 -6.68 -41.19
By element:
Atomic # 1 Polarization: 7.69 SS G_CDS: -5.87 Total: 1.82 kcal
Atomic # 6 Polarization: 9.65 SS G_CDS: -1.85 Total: 7.80 kcal
Atomic # 7 Polarization: -57.26 SS G_CDS: 0.65 Total: -56.61 kcal
Atomic # 8 Polarization: -16.13 SS G_CDS: -0.29 Total: -16.42 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.51 -6.68 -41.19 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001082346365.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.078 kcal
(2) G-P(sol) polarization free energy of solvation -34.509 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.569 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.892 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds