Wall clock time and date at job start Wed Apr 1 2020 03:41:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42898 * 114.00403 * 2 1
4 4 H 1.08998 * 110.88442 * 32.42780 * 3 2 1
5 5 C 1.54917 * 111.00398 * 268.54749 * 3 2 1
6 6 N 1.47422 * 104.83074 * 204.87574 * 5 3 2
7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 3
8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5
9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5
10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6
12 12 H 1.48502 * 109.47583 * 359.97438 * 11 9 7
13 13 H 1.48506 * 109.46831 * 119.99792 * 11 9 7
14 14 H 1.48497 * 109.47398 * 239.99526 * 11 9 7
15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 3
16 16 C 1.54316 * 107.27568 * 358.94070 * 15 6 5
17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 6
18 18 N 1.46500 * 110.72232 * 219.44595 * 16 15 6
19 19 C 1.34778 * 119.99379 * 268.51936 * 18 16 15
20 20 O 1.21563 * 120.00507 * 359.97438 * 19 18 16
21 21 C 1.47727 * 119.99489 * 179.97438 * 19 18 16
22 22 C 1.40249 * 119.88278 * 359.97438 * 21 19 18
23 23 C 1.36165 * 120.56163 * 179.97438 * 22 21 19
24 24 C 1.39909 * 119.97102 * 0.02562 * 23 22 21
25 25 N 1.34752 * 134.58823 * 179.97438 * 24 23 22
26 26 N 1.28650 * 109.29147 * 180.02562 * 25 24 23
27 27 N 1.28816 * 111.79058 * 0.02562 * 26 25 24
28 28 C 1.46500 * 125.94163 * 180.02562 * 27 26 25
29 29 C 1.37368 * 108.11623 * 359.97438 * 27 26 25
30 30 C 1.38621 * 134.88802 * 180.32254 * 29 27 26
31 31 H 1.09000 * 109.46919 * 300.00196 * 1 2 3
32 32 H 1.08999 * 109.47310 * 59.99456 * 1 2 3
33 33 H 1.08995 * 109.47537 * 179.97438 * 1 2 3
34 34 H 1.08998 * 110.36726 * 323.71587 * 5 3 2
35 35 H 1.09005 * 110.36534 * 86.04108 * 5 3 2
36 36 H 0.96998 * 119.99446 * 180.02562 * 10 9 7
37 37 H 1.09000 * 109.88493 * 239.51822 * 15 6 5
38 38 H 1.09005 * 110.00581 * 118.43132 * 15 6 5
39 39 H 0.97001 * 120.00302 * 88.51904 * 18 16 15
40 40 H 1.08003 * 119.72468 * 359.97438 * 22 21 19
41 41 H 1.07997 * 120.01585 * 180.02562 * 23 22 21
42 42 H 1.09004 * 109.46954 * 89.96846 * 28 27 26
43 43 H 1.08997 * 109.47037 * 209.96929 * 28 27 26
44 44 H 1.08999 * 109.46899 * 329.97067 * 28 27 26
45 45 H 1.07995 * 120.24703 * 359.93878 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3831 2.0100 0.5461
5 6 2.2697 1.7977 -1.4458
6 7 3.3606 2.7813 -1.3195
7 6 3.6227 3.7994 -2.1969
8 1 4.4496 4.4698 -2.0147
9 6 2.8254 3.9700 -3.3204
10 7 1.8179 3.1527 -3.5426
11 14 3.1826 5.3593 -4.5168
12 1 4.3598 6.1305 -4.0429
13 1 3.4684 4.7945 -5.8602
14 1 2.0031 6.2578 -4.5984
15 6 4.1210 2.4873 -0.0960
16 6 3.4486 1.2747 0.5813
17 1 3.9556 0.3495 0.3072
18 7 3.4231 1.4420 2.0365
19 6 4.4338 0.9618 2.7877
20 8 5.3663 0.3895 2.2579
21 6 4.4084 1.1309 4.2550
22 6 3.3316 1.7921 4.8637
23 6 3.2938 1.9552 6.2150
24 6 4.3354 1.4617 7.0080
25 7 4.5971 1.4564 8.3298
26 7 5.7169 0.8585 8.5390
27 7 6.2516 0.4472 7.4416
28 6 7.5233 -0.2701 7.3208
29 6 5.4215 0.7971 6.4046
30 6 5.4508 0.6296 5.0288
31 1 -0.3633 0.5139 0.8900
32 1 -0.3634 0.5139 -0.8899
33 1 -0.3634 -1.0276 -0.0005
34 1 2.5795 0.9669 -2.0796
35 1 1.3760 2.2725 -1.8509
36 1 1.2611 3.2717 -4.3279
37 1 4.0942 3.3475 0.5728
38 1 5.1537 2.2458 -0.3478
39 1 2.6788 1.8983 2.4593
40 1 2.5255 2.1751 4.2554
41 1 2.4601 2.4654 6.6744
42 1 7.3427 -1.3432 7.3852
43 1 7.9826 -0.0359 6.3604
44 1 8.1905 0.0351 8.1268
45 1 6.2781 0.1172 4.5606
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001082346365.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:41:12
Heat of formation + Delta-G solvation = 54.526978 kcal
Electronic energy + Delta-G solvation = -29708.062144 eV
Core-core repulsion = 25535.350967 eV
Total energy + Delta-G solvation = -4172.711178 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-44.29371 -41.34137 -39.82179 -38.43820 -37.48181 -35.94355 -35.71307 -33.77100
-31.93647 -31.89435 -30.46497 -28.98751 -28.71154 -27.51932 -26.39833 -25.26442
-24.63688 -22.54752 -22.20100 -22.13207 -21.55533 -19.66868 -19.01711 -18.73722
-18.01961 -17.80633 -17.58747 -17.08133 -16.82966 -16.05456 -16.03543 -15.75735
-15.69222 -15.31724 -15.27776 -14.95239 -14.60485 -14.42749 -14.36302 -13.93132
-13.80299 -13.70254 -13.26709 -13.18666 -13.15921 -12.92886 -12.80960 -12.74452
-12.55639 -12.32170 -12.00052 -11.88949 -11.84966 -11.83719 -11.51821 -11.23000
-10.79020 -10.57385 -10.25212 -10.05354 -9.45665 -8.94904 -7.79466 -5.26176
-0.81177 0.07226 0.95462 1.14150 1.48862 1.49877 1.60052 1.77606
1.92867 2.46301 2.62449 2.76211 2.83214 3.31771 3.44259 3.47761
3.56924 3.62080 3.84767 3.90762 3.94851 4.01111 4.08631 4.20835
4.25646 4.39878 4.42785 4.49327 4.56704 4.64327 4.70037 4.78942
4.83834 4.87842 4.92645 4.94310 5.09308 5.13439 5.30916 5.38441
5.42115 5.47374 5.50222 5.71143 6.21215 6.33621 6.44471 7.06330
7.10433 7.13836 7.71366 8.33212 9.22062
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.017107 B = 0.002347 C = 0.002228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1636.392912 B =11929.798855 C =12566.856660
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.395 6.395
3 C 0.076 3.924
4 H 0.093 0.907
5 C 0.144 3.856
6 N -0.619 5.619
7 C -0.239 4.239
8 H 0.083 0.917
9 C -0.062 4.062
10 N -0.947 5.947
11 Si 0.982 3.018
12 H -0.268 1.268
13 H -0.295 1.295
14 H -0.287 1.287
15 C 0.130 3.870
16 C 0.155 3.845
17 H 0.085 0.915
18 N -0.693 5.693
19 C 0.564 3.436
20 O -0.572 6.572
21 C -0.106 4.106
22 C -0.078 4.078
23 C -0.053 4.053
24 C 0.013 3.987
25 N -0.289 5.289
26 N -0.030 5.030
27 N -0.304 5.304
28 C 0.070 3.930
29 C 0.002 3.998
30 C -0.029 4.029
31 H 0.063 0.937
32 H 0.033 0.967
33 H 0.102 0.898
34 H -0.012 1.012
35 H 0.087 0.913
36 H 0.249 0.751
37 H 0.046 0.954
38 H 0.019 0.981
39 H 0.416 0.584
40 H 0.170 0.830
41 H 0.170 0.830
42 H 0.110 0.890
43 H 0.116 0.884
44 H 0.122 0.878
45 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.649 -5.996 21.799 22.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.314 6.314
3 C 0.016 3.984
4 H 0.111 0.889
5 C 0.018 3.982
6 N -0.347 5.347
7 C -0.367 4.367
8 H 0.101 0.899
9 C -0.255 4.255
10 N -0.597 5.597
11 Si 0.810 3.190
12 H -0.192 1.192
13 H -0.222 1.222
14 H -0.214 1.214
15 C 0.004 3.996
16 C 0.048 3.952
17 H 0.103 0.897
18 N -0.345 5.345
19 C 0.352 3.648
20 O -0.452 6.452
21 C -0.113 4.113
22 C -0.099 4.099
23 C -0.075 4.075
24 C -0.114 4.114
25 N -0.162 5.162
26 N -0.011 5.011
27 N -0.106 5.106
28 C -0.068 4.068
29 C -0.117 4.117
30 C -0.052 4.052
31 H 0.082 0.918
32 H 0.052 0.948
33 H 0.120 0.880
34 H 0.006 0.994
35 H 0.105 0.895
36 H 0.059 0.941
37 H 0.064 0.936
38 H 0.037 0.963
39 H 0.255 0.745
40 H 0.188 0.812
41 H 0.188 0.812
42 H 0.129 0.871
43 H 0.134 0.866
44 H 0.140 0.860
45 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 3.578 -6.452 22.804 23.968
hybrid contribution -0.086 0.690 -2.007 2.124
sum 3.492 -5.763 20.797 21.861
Atomic orbital electron populations
1.22967 0.79327 1.03823 1.00781 1.87837 1.21686 1.26826 1.95006
1.23635 0.92828 0.84879 0.97019 0.88925 1.22098 0.93836 0.90250
0.92029 1.44550 1.32850 1.32837 1.24416 1.19475 1.11204 1.04715
1.01352 0.89896 1.25622 0.98103 1.01696 1.00091 1.69993 1.20724
1.39987 1.28956 0.84965 0.77552 0.78342 0.78166 1.19207 1.22186
1.21393 1.21695 0.94286 0.95302 0.88355 1.21656 0.95821 0.98270
0.79409 0.89685 1.45620 1.24281 1.58594 1.05958 1.18362 0.81764
0.77755 0.86935 1.90781 1.35737 1.44026 1.74652 1.19602 0.97183
1.03035 0.91488 1.21138 0.97441 0.96820 0.94538 1.20215 0.96840
0.98552 0.91890 1.20538 0.97614 1.02544 0.90697 1.75326 1.07970
1.18112 1.14789 1.77918 1.04280 1.08498 1.10362 1.47548 1.19527
1.40881 1.02640 1.22786 0.78727 0.97839 1.07458 1.19676 0.94339
1.05517 0.92205 1.20096 0.99102 0.97849 0.88130 0.91847 0.94789
0.87993 0.99404 0.89487 0.94097 0.93629 0.96332 0.74458 0.81224
0.81225 0.87142 0.86567 0.85968 0.83155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.68 10.89 113.37 1.23 1.92 16
2 O -0.40 -13.35 10.52 -148.98 -1.57 -14.91 16
3 C 0.08 2.71 3.12 31.99 0.10 2.81 16
4 H 0.09 2.84 7.77 -2.39 -0.02 2.82 16
5 C 0.14 6.93 5.62 86.86 0.49 7.42 16
6 N -0.62 -31.27 3.39 -691.99 -2.35 -33.62 16
7 C -0.24 -13.09 10.27 84.03 0.86 -12.23 16
8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16
9 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16
10 N -0.95 -54.68 10.09 21.65 0.22 -54.46 16
11 Si 0.98 44.55 29.55 68.60 2.03 46.58 16
12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
14 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16
15 C 0.13 5.40 6.99 86.73 0.61 6.00 16
16 C 0.15 5.42 3.05 46.18 0.14 5.56 16
17 H 0.09 3.40 7.55 -2.39 -0.02 3.38 16
18 N -0.69 -17.86 5.05 -439.90 -2.22 -20.09 16
19 C 0.56 15.30 7.77 86.75 0.67 15.97 16
20 O -0.57 -20.11 15.97 -3.91 -0.06 -20.17 16
21 C -0.11 -2.18 5.88 -20.06 -0.12 -2.30 16
22 C -0.08 -1.17 9.46 22.28 0.21 -0.95 16
23 C -0.05 -0.84 10.03 22.19 0.22 -0.62 16
24 C 0.01 0.28 7.36 39.75 0.29 0.57 16
25 N -0.29 -7.15 12.42 -52.38 -0.65 -7.80 16
26 N -0.03 -0.67 13.07 37.02 0.48 -0.18 16
27 N -0.30 -5.33 3.80 -361.27 -1.37 -6.70 16
28 C 0.07 0.48 11.40 127.77 1.46 1.94 16
29 C 0.00 0.04 6.94 39.02 0.27 0.31 16
30 C -0.03 -0.58 9.59 22.58 0.22 -0.36 16
31 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16
32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16
33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16
34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16
35 H 0.09 4.65 5.88 -2.38 -0.01 4.64 16
36 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16
37 H 0.05 1.76 8.03 -2.39 -0.02 1.74 16
38 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16
39 H 0.42 7.63 6.56 -92.71 -0.61 7.03 16
40 H 0.17 1.47 6.36 -2.91 -0.02 1.45 16
41 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16
42 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16
43 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16
44 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16
45 H 0.15 2.78 7.63 -2.91 -0.02 2.76 16
Total: -1.00 -77.43 378.12 2.06 -75.37
By element:
Atomic # 1 Polarization: 12.51 SS G_CDS: 0.43 Total: 12.94 kcal
Atomic # 6 Polarization: 15.93 SS G_CDS: 7.13 Total: 23.06 kcal
Atomic # 7 Polarization: -116.96 SS G_CDS: -5.89 Total: -122.86 kcal
Atomic # 8 Polarization: -33.46 SS G_CDS: -1.63 Total: -35.09 kcal
Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal
Total: -77.43 2.06 -75.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001082346365.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.902 kcal
(2) G-P(sol) polarization free energy of solvation -77.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.467 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds